g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2TUK1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G239200 PE=4 SV=1) HSP 1 Score: 519.235 bits (1336), Expect = 7.856e-165 Identity = 247/252 (98.02%), Postives = 251/252 (99.60%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCLRLYE+LQ+T+KSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKR+S Sbjct: 1134 FCLRLYEYLQKTLKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLGYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRDS 1385
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2USZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G239200 PE=4 SV=1) HSP 1 Score: 519.235 bits (1336), Expect = 8.206e-165 Identity = 247/252 (98.02%), Postives = 251/252 (99.60%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCLRLYE+LQ+T+KSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKR+S Sbjct: 1133 FCLRLYEYLQKTLKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLGYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRDS 1384
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A061FFE4_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034949 PE=4 SV=1) HSP 1 Score: 459.144 bits (1180), Expect = 1.922e-142 Identity = 220/252 (87.30%), Postives = 237/252 (94.05%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCLRLYEHLQ+T+KSLG+PKITVGIITPYKLQLKCLQREFESV+++EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQSDDWAALIADAKAR CYMDMDSLPKDF K+LL FSGPRGL Y PSQGK SNMRGLRSAGPRHRSLDMHM+SR+GTPSEDEDKSGT+VISRNGNYRPFK P++T LDDF SGDKSREAWQYGI KKQ+SAG +GKR+S Sbjct: 1102 FCLRLYEHLQKTVKSLGLPKITVGIITPYKLQLKCLQREFESVIKSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALIADAKARKCYMDMDSLPKDFPKELL-SNFSGPRGLGYPPSQGKVSNMRGLRSAGPRHRSLDMHMDSRAGTPSEDEDKSGTSVISRNGNYRPFKPPMETSLDDFDQSGDKSREAWQYGIQKKQSSAGVVGKRDS 1351
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A061FG69_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_034949 PE=4 SV=1) HSP 1 Score: 459.144 bits (1180), Expect = 3.925e-142 Identity = 220/252 (87.30%), Postives = 237/252 (94.05%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCLRLYEHLQ+T+KSLG+PKITVGIITPYKLQLKCLQREFESV+++EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQSDDWAALIADAKAR CYMDMDSLPKDF K+LL FSGPRGL Y PSQGK SNMRGLRSAGPRHRSLDMHM+SR+GTPSEDEDKSGT+VISRNGNYRPFK P++T LDDF SGDKSREAWQYGI KKQ+SAG +GKR+S Sbjct: 1136 FCLRLYEHLQKTVKSLGLPKITVGIITPYKLQLKCLQREFESVIKSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALIADAKARKCYMDMDSLPKDFPKELL-SNFSGPRGLGYPPSQGKVSNMRGLRSAGPRHRSLDMHMDSRAGTPSEDEDKSGTSVISRNGNYRPFKPPMETSLDDFDQSGDKSREAWQYGIQKKQSSAGVVGKRDS 1385
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2TSW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G282100 PE=4 SV=1) HSP 1 Score: 413.69 bits (1062), Expect = 2.223e-125 Identity = 204/252 (80.95%), Postives = 222/252 (88.10%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESV+++EEG D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRAL VMGNA ALVQSDDWAALIADAKARNCY+DMDSLPKDF KDL+ K+FSGPRGL Y PSQGKASN R R AGPRHRS DMHM+SRSGTP ED KS I RNGNYRPFK P++ LD+F +GDKSR+AWQYG +K+NSAG + K++S Sbjct: 1133 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVIKSEEGN-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALLVMGNAKALVQSDDWAALIADAKARNCYVDMDSLPKDFQKDLVSKDFSGPRGLGYPPSQGKASNTRSFRYAGPRHRSGDMHMDSRSGTPLEDAGKS----IYRNGNYRPFKPPMEPSLDNFDQAGDKSRDAWQYGT-QKRNSAGALWKKDS 1378
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B0MLJ7_GOSAR (SPBC29A10.10c: Uncharacterized ATP-dependent helicase C29A10.10c OS=Gossypium arboreum GN=F383_21170 PE=4 SV=1) HSP 1 Score: 403.675 bits (1036), Expect = 1.384e-121 Identity = 203/260 (78.08%), Postives = 220/260 (84.62%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALW--------VMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESV+++EEG D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRAL VMGNA ALVQSDDWAALIADAKARNCYMDMDSLPKDF KDL+ K+FSG RGL Y PSQGKASN R R AGPRHRS DMHM+SRSGTP ED KS I RNGNYRPFK P++ LD+F +GDKSR+AWQYG +K+NSA + K++S Sbjct: 1145 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVIKSEEGN-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALLELTLMFEQVMGNAKALVQSDDWAALIADAKARNCYMDMDSLPKDFQKDLVSKDFSGSRGLGYPPSQGKASNTRSFRYAGPRHRSGDMHMDSRSGTPLEDAGKS----IYRNGNYRPFKPPMEPSLDNFDQAGDKSRDAWQYGT-QKRNSAAALWKKDS 1398
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: W9RSI0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021548 PE=4 SV=1) HSP 1 Score: 389.423 bits (999), Expect = 2.434e-119 Identity = 193/251 (76.89%), Postives = 216/251 (86.06%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKA-SNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FCLR+YEHLQ+T KSLG+ KI+VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALIADAK+R+CYMDMDSLPKDF L+PK G Y+P GK SN RGLRS GPRHRS DMHMESRSGT SED++KSG ISRNG+YRPF+ P + LDDF SGD+S++AWQYGI KKQNS+G + KR+ Sbjct: 721 FCLRVYEHLQKTAKSLGLGKISVGIITPYKLQLKCLQREFEDVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALIQSDDWAALIADAKSRDCYMDMDSLPKDF---LVPK------GPYTPLPGKVLSNSRGLRSGGPRHRSFDMHMESRSGTLSEDDEKSGVA-ISRNGSYRPFRPPFENSLDDFDQSGDRSKDAWQYGIQKKQNSSGVVAKRD 960
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: M5XRW4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000264mg PE=4 SV=1) HSP 1 Score: 392.504 bits (1007), Expect = 1.229e-117 Identity = 190/251 (75.70%), Postives = 218/251 (86.85%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752 FC+RLYEHL +++K+ GV KI+VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWA+LI DAKARNCYMDM++LPK+F L+PK GP Y+P GK +SNMRG RSAGPRHRSLDMH+ESRSGTPSED++K G +VISRNG YRP K P + LDDF SGDKSR+AWQYGI +K +SAG +G+R+ Sbjct: 1134 FCVRLYEHLHKSLKAFGVGKISVGIITPYKLQLKCLQREFEDVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWASLITDAKARNCYMDMETLPKEF---LVPK---GPS--YTPLPGKPSSNMRGFRSAGPRHRSLDMHVESRSGTPSEDDEKLGASVISRNGTYRPMKPPFENSLDDFDQSGDKSRDAWQYGIQRKHSSAGVVGRRD 1375
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A5BNC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009619 PE=4 SV=1) HSP 1 Score: 392.504 bits (1007), Expect = 1.872e-117 Identity = 192/252 (76.19%), Postives = 220/252 (87.30%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755 CLRLYEHLQ+T+KSLG+ KI+VGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALI+DA+AR+CY+DMDSLPK+F L+PK GP Y P GK +SNMRGLRSAGPRHR LDMH+ES+SGTPSED++KS ++ISRNGNYRP K ++ LDDF S DKSR+AWQYGI KKQ+SAG + KR+S Sbjct: 1166 ICLRLYEHLQKTLKSLGMGKISVGIITPYKLQLKCLQREFDDVLSSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWAALISDARARSCYLDMDSLPKEF---LVPK---GP--TYGPLSGKVSSNMRGLRSAGPRHRQLDMHVESKSGTPSEDDEKSNASLISRNGNYRPLKPTMENSLDDFDQSADKSRDAWQYGIQKKQSSAGVVAKRDS 1408
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A067EWL0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047960mg PE=4 SV=1) HSP 1 Score: 360.147 bits (923), Expect = 5.482e-115 Identity = 185/267 (69.29%), Postives = 211/267 (79.03%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES*ALVVVYELFWLMAV 800 F + LYEHLQ+T+KS+G+ K+TVGIITPYKLQLKCLQ EF +VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA AL QSDDWAALIAD+KARNCYMDMDSLPK+F+ L K Y P QGK N RGLRSAG RHRS DM+MESRSGTPSED++K +SRNGNYRPFK PL+ LDDF SG+K R+AWQ+GI KKQ+S G R L + + FW + + Sbjct: 76 FGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSVALAAKAPG-----YGPLQGKIPHNARGLRSAGQRHRSFDMNMESRSGTPSEDDEK-----VSRNGNYRPFKPPLENSLDDFDQSGEKYRDAWQHGIQKKQSSGGKGSPR----LEDLVDAFWWVGL 327
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: YGSA_SCHPO (Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.345e-24 Identity = 67/175 (38.29%), Postives = 105/175 (60.00%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCL----QREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRAS-SHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRS 512 F L LYE L + ++ +G++TPY+ Q++ L QR++ S++ + + I+TVD FQGQE+D+II SCVR+S S G+GF+ D+RR+NVALTRA+ +L+++GN+ L+Q D + +LI DAK R + +DL +F + + + S ASN L S Sbjct: 1650 FILLLYERLIQCYLNIDFEG-KIGVVTPYRSQVQQLRSQFQRKYGSIIF-----KHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVW-----------RDLSANQFKNSKSISNVSTHLASNNLNLAS 1807
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SEN1_YEAST (Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 1.569e-22 Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRA--SSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNC 386 +GII+PY+ Q++ +++EF K I NT+D FQGQE+++I++SCVRA + VGF+ D RRMNVALTRA+ ++WV+G+ +L +S W LI DAK R+C Sbjct: 1746 IGIISPYREQMQKMRKEFARYFGGMINK-SIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRSC 1852
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SEN1_SCHPO (Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen1 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.686e-21 Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKR---DIYINTVDAFQGQERDVIIMSCVRA-SSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380 +G+ITPY+ QL L+R F + + GK I I TVD FQGQE+D+I SCV++ S HG+GF+ D RR+NVALTRAR +L ++GN L D W +L+ DA +R Sbjct: 1533 IGVITPYRSQLHELRRAF----KVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLVDDALSR 1636
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MAA3_ARATH (Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.848e-19 Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 3 Query: 3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHG-VGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARN 383 F L +Y L L + II+PY Q+K + F+ + TE ++ + INTVD FQG+E+DV I SCVRA+ +G +GF+++ RRMNV +TRA+ ++ V+G+A+ L W LI A+ RN Sbjct: 626 FVLLIYHRLVTMYPELKSSS-QLAIISPYNYQVKTFKDRFKEMFGTE-AEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATLKSDPLWKNLIESAEQRN 751
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: Y4399_DICDI (Probable helicase DDB_G0274399 OS=Dictyostelium discoideum GN=DDB_G0274399 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 6.934e-19 Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH---GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALI 362 +GII+PY+ Q+ L+ F++ I I+TVD FQG+ER++II SCVRA G+GF++D+RRMNVALTR R +L ++GN AL + DW LI Sbjct: 744 IGIISPYRQQVLALREIFKNY-------PGISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELI 837
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=2E4.130 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 7.631e-19 Identity = 57/163 (34.97%), Postives = 91/163 (55.83%), Query Frame = 3 Query: 51 GVPKITVGIITPYKLQLKCLQREFESV-LRTEEGKRDIYINTVDAFQGQERDVIIMSCVRAS-SHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSP----SQGKASNMRGLRSAGP 521 GV +G+ITPY+ Q + ++ +E R++ + +VDAFQG+E+D I++SCVR++ + G+GF++D RR+NVALTRA+ L ++GN L + + W L+ K + C ++ + LL +F PR Y P +Q AS R A P Sbjct: 769 GVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDKKCL--VEGPLTNLQPSLL--QFGRPRQAYRPQRSHTQHVASGPSNGRFAAP 927
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_MOUSE (Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 7.161e-18 Identity = 56/135 (41.48%), Postives = 85/135 (62.96%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL 464 +GIITPY+ Q L + +F L T+ +++ I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRAR + ++GN AL + W L++ K + ++ P + ++ L +FS PR L Sbjct: 796 IGIITPYEGQRSYLVQYMQFSGSLHTKL-YQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEG---PLNNLRESL-MQFSKPRKL 925
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_TAKRU (Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes GN=rent1 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 7.650e-18 Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGT 596 +GIITPY+ Q L + +F L T+ + I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRA+ + ++GN AL + W L+ + K + ++ P + ++ L +FS PR L + + PR S M+ + P D+S T Sbjct: 771 IGIITPYEGQRSYLVQYMQFSGSLHTK--LYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEG---PLNNLRESL-MQFSKPRKL-------------VNTINPRFMSTAMYDAREALIPGSAYDRSNT 930
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_DICDI (Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 7.690e-18 Identity = 54/145 (37.24%), Postives = 84/145 (57.93%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQREFESVLRTE-EGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKEFSGPRGLYSPSQGKAS 491 +GIITPY+ Q + + + E + I + +VD+FQG+E+D II+SCVR++ + G+GF+ D RR+NVALTRAR L ++GNA L + W +LI+ K +N ++ + +L + PK+ G L P Q S Sbjct: 859 IGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVEGSLANLKQSPVILQKPKKLYGQGKLPIPGQNSNS 1003
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_HUMAN (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 1.068e-17 Identity = 66/187 (35.29%), Postives = 100/187 (53.48%), Query Frame = 3 Query: 69 VGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSL---------PKDFTKDLLP------------KEFSGPRGLYS-PSQGKASNMR-------GLRSAGPRH 527 +GIITPY+ Q L + +F L T+ +++ I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRAR + ++GN AL + W L+ K + ++ +++L P+ + P +E P +Y SQG+ S+M G+ SAGP H Sbjct: 801 IGIITPYEGQRSYLVQYMQFSGSLHTKL-YQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSH 986 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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