g.arboreum_cottongen_reftransV1_0001270, g.arboreum_cottongen_reftransV1_0001270 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: M1ACQ6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402007686 PE=4 SV=1) HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0 Identity = 252/317 (79.50%), Postives = 286/317 (90.22%), Query Frame = 2 Query: 284 VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFK 1234 +G E K E SLKD+GNEFFKAGNYLKAAALYTQAIK+DPSN TLYSNRAAAFLHLVKL+KA+ADAE TI LKP+WEKGYFRKGCILEAMERY+DALAAFQIA +YNPQS+EVS+KIK L+QLAKDKKR +E++N+RSNVD+AK + LKSE+SEKY +EDSWKE FSF +ET+E AVKSWHETSKVDPRVYFLL+KEK+ +KYAP VNIDKAFESP TH++CFSFLRQYAEDSF++AACLV PKSII+YPQVWKGQGSRKWKHGQ+DG FVQFESPL+R+LWFI SS E GKTLCRDP LDI AHE+LPR+FK Sbjct: 1 MGESEAK-SETSLKDQGNEFFKAGNYLKAAALYTQAIKKDPSNATLYSNRAAAFLHLVKLSKAIADAEMTINLKPEWEKGYFRKGCILEAMERYEDALAAFQIASKYNPQSSEVSKKIKILTQLAKDKKRTEELENMRSNVDMAKHFDALKSELSEKYGAEDSWKEFFSFHVETVENAVKSWHETSKVDPRVYFLLNKEKTDTEKYAPAVNIDKAFESPQTHNNCFSFLRQYAEDSFAQAACLVTPKSIISYPQVWKGQGSRKWKHGQNDGIFVQFESPLVRRLWFIPSSTEKGKTLCRDPVPLDISAHEILPRVFK 316
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: Q8RXN1_ARATH (Carboxylate clamp-tetratricopeptide repeat protein OS=Arabidopsis thaliana GN=At1g04190 PE=2 SV=1) HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0 Identity = 252/323 (78.02%), Postives = 286/323 (88.54%), Query Frame = 2 Query: 269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237 MAE + G E SLK+KGNEFFKAGN+LKAAALYTQAIK DPSN TLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKGC+LEAME+Y+DALAAF++ALQYNPQS EVSRKIKRL QL K+K+RAQE++NLRSNVD+AK LE+ KSEMSE Y +E+ WKEMFSF++ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAF+SP THS+CF++LRQYAE+SFS+AACLV PKS I+YPQVWKG GSRKWK G +DG FVQFESP LRK+WFISSS E G+TLCR+P+ LDIGAHE+LPR+FKE Sbjct: 1 MAEKAGKATNGGEAEKSLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADAETTIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQKEKQRAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTPKSSISYPQVWKGVGSRKWKLGPNDGIFVQFESPSLRKVWFISSSKEKGQTLCREPQALDIGAHEILPRIFKE 323
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: V7BLJ3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G277400g PE=4 SV=1) HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0 Identity = 257/323 (79.57%), Postives = 282/323 (87.31%), Query Frame = 2 Query: 269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237 MAE + GSG EMSLKD+GNEFFK+G YLKAAALYTQAIKQDPSNPTLYSNRAAA L L KLNKAL DAE TI LKPQWEKGYFRKG ILEAM+RYDDALAAFQIALQYN QS EVS+KIKR++QL KD KRAQEV+N+RSNVD+AK L+T KSEM EKY SE+ WK +FSF++ET+ETAVKSW ETS VD RVYFLLD EK+Q DKYAPVVNIDKAFESPHTH++CFSFLRQYAE+SFS+AACLV PK+IIAYPQVWKGQGSRKWKH DGFFVQFESP LRKL+FI SS + G+ LCRDPE LDIG HEVLPRLFKE Sbjct: 1 MAETKEGSG----SEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNSQSQEVSKKIKRMNQLVKDSKRAQEVENMRSNVDVAKHLDTFKSEMVEKYGSEECWKHLFSFVVETIETAVKSWLETSTVDARVYFLLDTEKTQTDKYAPVVNIDKAFESPHTHANCFSFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAHSDGFFVQFESPSLRKLFFIPSSIDKGQILCRDPEGLDIGVHEVLPRLFKE 319
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A087HKV9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G036100 PE=4 SV=1) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 248/313 (79.23%), Postives = 282/313 (90.10%), Query Frame = 2 Query: 299 GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237 G E SLKDKGNEFFKAGN+LKAAALYTQAIK DP+N TLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKG +LEAME+Y+DALAAF++ALQYNPQSAEVSRKIKRL QL ++K+RAQE++NLR+NV++AK LE+ KSEMS Y +E+ WKEMF+FL+ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAFESPHTHS+CFS+LRQYAE+SFS+AACLVA KS I+YPQVWKGQGSRKWK GQ+DG FVQFESP +R +WFI SS E G+TLCRDP+ LDIGAHE+LPR+FKE Sbjct: 18 GGEAEKSLKDKGNEFFKAGNFLKAAALYTQAIKLDPTNATLYSNRAAAFLSLVKLSKALADAETTIKLNPQWEKGYFRKGSVLEAMEKYEDALAAFEMALQYNPQSAEVSRKIKRLGQLLQEKQRAQELENLRTNVNMAKHLESFKSEMSASYGTEECWKEMFAFLVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFESPHTHSNCFSYLRQYAEESFSKAACLVASKSSISYPQVWKGQGSRKWKLGQNDGIFVQFESPSIRNVWFIPSSKEKGQTLCRDPQALDIGAHEILPRIFKE 330
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: I3S8B3_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 250/314 (79.62%), Postives = 281/314 (89.49%), Query Frame = 2 Query: 296 EGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237 EG E+SLKD+GNEFFK+G YLKAAALYTQAIK+DPSNPTL+SNRAAA L L KLNKAL DAE TI LKP+WEKG+FRKGCILEAM+RYDDALA+FQIA QYNPQS EV ++IK+++QL KD KRAQEV+N+RSNVD+AK L+TLK EMSEKY SE+SWK+MFSFL+ETMETAVKSWHETS VD RVYFL DKEK+Q DKY P+VNIDKAFESP THSSCF F RQYAE+SFSRAACLVA K+II YPQVWKGQGSRKWKH Q+DGFFVQFESP +RKLWFI SSNE G+ LCRDPE+LD+GAHEV+PRLFKE Sbjct: 6 EGTSCEISLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLFSNRAAALLQLDKLNKALDDAEMTIKLKPEWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQEVLKRIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTLKPEMSEKYGSEESWKDMFSFLVETMETAVKSWHETSSVDARVYFLHDKEKTQTDKYPPIVNIDKAFESPETHSSCFPFFRQYAEESFSRAACLVAAKNIIFYPQVWKGQGSRKWKHAQNDGFFVQFESPSVRKLWFIPSSNEKGQILCRDPEILDVGAHEVVPRLFKE 319
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.062e-13 Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 2 Query: 314 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQ 652 + LK+KGN++FK G Y +A YT+ + DP NP L +NRA+A+ L K A +D I L + K Y R+G A+++ +DA + L+ P + E + +++++ Q Sbjct: 134 LVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQ 246 HSP 2 Score: 63.5438 bits (153), Expect = 2.766e-9 Identity = 42/141 (29.79%), Postives = 70/141 (49.65%), Query Frame = 2 Query: 272 AEAEVGSGE---GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEV 685 AE E + E G+ + ++ KD GN FFK G Y +A YT+ I D +N L +NRA A+L + K +A D I L + K + R+G + + ++A F+ L P + + ++ R+ + +K R +V Sbjct: 266 AEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKGRWDDV 406
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.402e-13 Identity = 37/113 (32.74%), Postives = 66/113 (58.41%), Query Frame = 2 Query: 314 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQ 652 + LK+KGN++FK G Y +A YT+ + DP NP L +NRA+A+ L K A +D + L + K Y R+G A+++ ++A ++ L+ P + E + +++++SQ Sbjct: 134 LVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQ 246 HSP 2 Score: 65.4698 bits (158), Expect = 8.634e-10 Identity = 39/128 (30.47%), Postives = 66/128 (51.56%), Query Frame = 2 Query: 281 EVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKD 664 ++ + + K Q +S KD+GN FFK G Y +A YT+ I D +N L +NRA A+L + K +A D I L + K + R+G + + ++A F+ L P + + + LS++ K+ Sbjct: 272 QIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQA---VTELSKIKKE 396
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: STI1L_PLAF7 (STI1-like protein OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0324 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.219e-13 Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 2 Query: 323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKR----LSQLAKDKKRAQE 682 K+KGNE+FK ++ A Y +AI+++P++ LYSNRAAA L++ AL D I L P + K Y RKG + M+ Y AL A+ L+ +P + E +R + +++K +K +E Sbjct: 382 KNKGNEYFKNNDFPNAKKEYDEAIRRNPNDAKLYSNRAAALTKLIEYPSALEDVMKAIELDPTFVKAYSRKGNLHFFMKDYYKALQAYNKGLELDPNNKECLEGYQRCAFKIDEMSKSEKVDEE 505 HSP 2 Score: 70.8626 bits (172), Expect = 1.468e-11 Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2 Query: 299 GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVS---RKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMS 748 K + LK+ GN+ F+ G Y +A ++ AI DP + LYSN + AF L + +AL A I++K W KGY RKGC + + +A + L+ +P + + K++ + L + AQ + +L + ++ L++ K E S Sbjct: 3 NKEEAQRLKELGNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNKSLQDALSKVRNENML----ENAQLIAHLNNIIENDPQLKSYKEENS 151
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.608e-13 Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 2 Query: 320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKY---KSEDSWKEMFSFLIETME 811 LK + N++FKA +Y A Y+QAI+ +PSN Y NR+ A+L AL DA I L ++ KGY+R+ A+ ++ AL ++ ++ P + K + +++ K K + + + SL+ + ++Y K ED K SF+ E M+ Sbjct: 31 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG-KVTISFMKELMQ 196
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.407e-13 Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 2 Query: 320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIK 640 LK NE FK Y +A LYTQAI+ + N Y+NRA A L + A+ D I + P++ KGY+R+G AM ++ DAL FQ + P + ++K+K Sbjct: 17 LKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLK 123 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001270 ID=g.arboreum_cottongen_reftransV1_0001270; Name=g.arboreum_cottongen_reftransV1_0001270; organism=Gossypium arboreum; type=contig; length=1709bpback to top |