g.arboreum_cottongen_reftransV1_0001270, g.arboreum_cottongen_reftransV1_0001270 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001270
Unique Nameg.arboreum_cottongen_reftransV1_0001270
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1709
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr7chromosomeg.arboreum_cottongen_reftransV1_0001270:1..1707 .
Chr7:37337523..37341663 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: M1ACQ6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402007686 PE=4 SV=1)

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 252/317 (79.50%), Postives = 286/317 (90.22%), Query Frame = 2
Query:  284 VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFK 1234
            +G  E K  E SLKD+GNEFFKAGNYLKAAALYTQAIK+DPSN TLYSNRAAAFLHLVKL+KA+ADAE TI LKP+WEKGYFRKGCILEAMERY+DALAAFQIA +YNPQS+EVS+KIK L+QLAKDKKR +E++N+RSNVD+AK  + LKSE+SEKY +EDSWKE FSF +ET+E AVKSWHETSKVDPRVYFLL+KEK+  +KYAP VNIDKAFESP TH++CFSFLRQYAEDSF++AACLV PKSII+YPQVWKGQGSRKWKHGQ+DG FVQFESPL+R+LWFI SS E GKTLCRDP  LDI AHE+LPR+FK
Sbjct:    1 MGESEAK-SETSLKDQGNEFFKAGNYLKAAALYTQAIKKDPSNATLYSNRAAAFLHLVKLSKAIADAEMTINLKPEWEKGYFRKGCILEAMERYEDALAAFQIASKYNPQSSEVSKKIKILTQLAKDKKRTEELENMRSNVDMAKHFDALKSELSEKYGAEDSWKEFFSFHVETVENAVKSWHETSKVDPRVYFLLNKEKTDTEKYAPAVNIDKAFESPQTHNNCFSFLRQYAEDSFAQAACLVTPKSIISYPQVWKGQGSRKWKHGQNDGIFVQFESPLVRRLWFIPSSTEKGKTLCRDPVPLDISAHEILPRVFK 316          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: Q8RXN1_ARATH (Carboxylate clamp-tetratricopeptide repeat protein OS=Arabidopsis thaliana GN=At1g04190 PE=2 SV=1)

HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0
Identity = 252/323 (78.02%), Postives = 286/323 (88.54%), Query Frame = 2
Query:  269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAE    +  G   E SLK+KGNEFFKAGN+LKAAALYTQAIK DPSN TLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKGC+LEAME+Y+DALAAF++ALQYNPQS EVSRKIKRL QL K+K+RAQE++NLRSNVD+AK LE+ KSEMSE Y +E+ WKEMFSF++ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAF+SP THS+CF++LRQYAE+SFS+AACLV PKS I+YPQVWKG GSRKWK G +DG FVQFESP LRK+WFISSS E G+TLCR+P+ LDIGAHE+LPR+FKE
Sbjct:    1 MAEKAGKATNGGEAEKSLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADAETTIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQKEKQRAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTPKSSISYPQVWKGVGSRKWKLGPNDGIFVQFESPSLRKVWFISSSKEKGQTLCREPQALDIGAHEILPRIFKE 323          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: V7BLJ3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G277400g PE=4 SV=1)

HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 257/323 (79.57%), Postives = 282/323 (87.31%), Query Frame = 2
Query:  269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAE + GSG     EMSLKD+GNEFFK+G YLKAAALYTQAIKQDPSNPTLYSNRAAA L L KLNKAL DAE TI LKPQWEKGYFRKG ILEAM+RYDDALAAFQIALQYN QS EVS+KIKR++QL KD KRAQEV+N+RSNVD+AK L+T KSEM EKY SE+ WK +FSF++ET+ETAVKSW ETS VD RVYFLLD EK+Q DKYAPVVNIDKAFESPHTH++CFSFLRQYAE+SFS+AACLV PK+IIAYPQVWKGQGSRKWKH   DGFFVQFESP LRKL+FI SS + G+ LCRDPE LDIG HEVLPRLFKE
Sbjct:    1 MAETKEGSG----SEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNSQSQEVSKKIKRMNQLVKDSKRAQEVENMRSNVDVAKHLDTFKSEMVEKYGSEECWKHLFSFVVETIETAVKSWLETSTVDARVYFLLDTEKTQTDKYAPVVNIDKAFESPHTHANCFSFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAHSDGFFVQFESPSLRKLFFIPSSIDKGQILCRDPEGLDIGVHEVLPRLFKE 319          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A087HKV9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G036100 PE=4 SV=1)

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 248/313 (79.23%), Postives = 282/313 (90.10%), Query Frame = 2
Query:  299 GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            G   E SLKDKGNEFFKAGN+LKAAALYTQAIK DP+N TLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKG +LEAME+Y+DALAAF++ALQYNPQSAEVSRKIKRL QL ++K+RAQE++NLR+NV++AK LE+ KSEMS  Y +E+ WKEMF+FL+ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAFESPHTHS+CFS+LRQYAE+SFS+AACLVA KS I+YPQVWKGQGSRKWK GQ+DG FVQFESP +R +WFI SS E G+TLCRDP+ LDIGAHE+LPR+FKE
Sbjct:   18 GGEAEKSLKDKGNEFFKAGNFLKAAALYTQAIKLDPTNATLYSNRAAAFLSLVKLSKALADAETTIKLNPQWEKGYFRKGSVLEAMEKYEDALAAFEMALQYNPQSAEVSRKIKRLGQLLQEKQRAQELENLRTNVNMAKHLESFKSEMSASYGTEECWKEMFAFLVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFESPHTHSNCFSYLRQYAEESFSKAACLVASKSSISYPQVWKGQGSRKWKLGQNDGIFVQFESPSIRNVWFIPSSKEKGQTLCRDPQALDIGAHEILPRIFKE 330          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: I3S8B3_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 250/314 (79.62%), Postives = 281/314 (89.49%), Query Frame = 2
Query:  296 EGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            EG   E+SLKD+GNEFFK+G YLKAAALYTQAIK+DPSNPTL+SNRAAA L L KLNKAL DAE TI LKP+WEKG+FRKGCILEAM+RYDDALA+FQIA QYNPQS EV ++IK+++QL KD KRAQEV+N+RSNVD+AK L+TLK EMSEKY SE+SWK+MFSFL+ETMETAVKSWHETS VD RVYFL DKEK+Q DKY P+VNIDKAFESP THSSCF F RQYAE+SFSRAACLVA K+II YPQVWKGQGSRKWKH Q+DGFFVQFESP +RKLWFI SSNE G+ LCRDPE+LD+GAHEV+PRLFKE
Sbjct:    6 EGTSCEISLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLFSNRAAALLQLDKLNKALDDAEMTIKLKPEWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQEVLKRIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTLKPEMSEKYGSEESWKDMFSFLVETMETAVKSWHETSSVDARVYFLHDKEKTQTDKYPPIVNIDKAFESPETHSSCFPFFRQYAEESFSRAACLVAAKNIIFYPQVWKGQGSRKWKHAQNDGFFVQFESPSVRKLWFIPSSNEKGQILCRDPEILDVGAHEVVPRLFKE 319          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.062e-13
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  314 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQ 652
            + LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    I L   + K Y R+G    A+++ +DA   +   L+  P + E + +++++ Q
Sbjct:  134 LVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQ 246          

HSP 2 Score: 63.5438 bits (153), Expect = 2.766e-9
Identity = 42/141 (29.79%), Postives = 70/141 (49.65%), Query Frame = 2
Query:  272 AEAEVGSGE---GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEV 685
            AE E  + E   G+ + ++ KD GN FFK G Y +A   YT+ I  D +N  L +NRA A+L + K  +A  D    I L   + K + R+G     + + ++A   F+  L   P + +   ++ R+ +   +K R  +V
Sbjct:  266 AEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKGRWDDV 406          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.402e-13
Identity = 37/113 (32.74%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  314 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQ 652
            + LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    + L   + K Y R+G    A+++ ++A   ++  L+  P + E + +++++SQ
Sbjct:  134 LVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQ 246          

HSP 2 Score: 65.4698 bits (158), Expect = 8.634e-10
Identity = 39/128 (30.47%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  281 EVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKD 664
            ++ + + K Q +S KD+GN FFK G Y +A   YT+ I  D +N  L +NRA A+L + K  +A  D    I L   + K + R+G     + + ++A   F+  L   P + +    +  LS++ K+
Sbjct:  272 QIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQA---VTELSKIKKE 396          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: STI1L_PLAF7 (STI1-like protein OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0324 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.219e-13
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKR----LSQLAKDKKRAQE 682
            K+KGNE+FK  ++  A   Y +AI+++P++  LYSNRAAA   L++   AL D    I L P + K Y RKG +   M+ Y  AL A+   L+ +P + E     +R    + +++K +K  +E
Sbjct:  382 KNKGNEYFKNNDFPNAKKEYDEAIRRNPNDAKLYSNRAAALTKLIEYPSALEDVMKAIELDPTFVKAYSRKGNLHFFMKDYYKALQAYNKGLELDPNNKECLEGYQRCAFKIDEMSKSEKVDEE 505          

HSP 2 Score: 70.8626 bits (172), Expect = 1.468e-11
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  299 GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVS---RKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMS 748
             K +   LK+ GN+ F+ G Y +A   ++ AI  DP +  LYSN + AF  L +  +AL  A   I++K  W KGY RKGC    + +  +A   +   L+ +P +  +     K++  + L    + AQ + +L + ++    L++ K E S
Sbjct:    3 NKEEAQRLKELGNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNKSLQDALSKVRNENML----ENAQLIAHLNNIIENDPQLKSYKEENS 151          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.608e-13
Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKY---KSEDSWKEMFSFLIETME 811
            LK + N++FKA +Y  A   Y+QAI+ +PSN   Y NR+ A+L       AL DA   I L  ++ KGY+R+     A+ ++  AL  ++  ++  P   +   K +  +++ K K   + +        +  SL+     + ++Y   K ED  K   SF+ E M+
Sbjct:   31 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG-KVTISFMKELMQ 196          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.407e-13
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIK 640
            LK   NE FK   Y +A  LYTQAI+ +  N   Y+NRA A   L +   A+ D    I + P++ KGY+R+G    AM ++ DAL  FQ   +  P   + ++K+K
Sbjct:   17 LKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLK 123          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M1ACQ6_SOLTU0.000e+079.50Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
Q8RXN1_ARATH0.000e+078.02Carboxylate clamp-tetratricopeptide repeat protein... [more]
V7BLJ3_PHAVU0.000e+079.57Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A087HKV9_ARAAL0.000e+079.23Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
I3S8B3_MEDTR0.000e+079.62Uncharacterized protein OS=Medicago truncatula PE=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RPAP3_RAT1.062e-1333.63RNA polymerase II-associated protein 3 OS=Rattus n... [more]
RPAP3_HUMAN1.402e-1332.74RNA polymerase II-associated protein 3 OS=Homo sap... [more]
STI1L_PLAF73.219e-1335.48STI1-like protein OS=Plasmodium falciparum (isolat... [more]
PPP5_HUMAN3.608e-1328.74Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
PPP5_SOLLC5.407e-1337.38Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 49..82
e-value: 8.1
score: 15.4
coord: 83..116
e-value: 6.8E-5
score: 32.3
coord: 15..48
e-value: 0.0071
score: 25.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 15..48
score: 9.352
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 49..82
score: 6.018
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 83..116
score: 9.765
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 16..144
e-value: 1.2E-33
score: 115.4
IPR011990Tetratricopeptide-like helical domainPFAMPF13414TPR_11coord: 22..60
e-value: 1.4E-9
score: 37.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 17..126
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 84..115
e-value: 8.6E-6
score: 25.4
NoneNo IPR availablePANTHERPTHR22904:SF289CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 13..193
NoneNo IPR availablePANTHERPTHR22904:SF289CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 252..311
NoneNo IPR availablePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 252..311
coord: 13..193
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 15..116
score: 21.994

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001270 ID=g.arboreum_cottongen_reftransV1_0001270; Name=g.arboreum_cottongen_reftransV1_0001270; organism=Gossypium arboreum; type=contig; length=1709bp
GTTTAGTTTACCCATAATTTTTTTAAGGAAAAAACCAGAGCTCACTCTTG
TAATTTTGCTTAGGGTTTTCTTTTAATCAAAACTAATCTGATTCTCCTTT
CTACTCCAAAATCACCAAAAGCCCAGATTTTGTTTAGAAATTAGAAAACT
CCATCGTTTATACCGCTGTTAAATACCTCCATAGACATCATCCCCTCAGA
AAAGTAGAAGCTTCTCTCTCCCATTAACCCTAACTACACAACAAATAAAA
TTACTTCAAAACAATAGGATGGCAGAAGCAGAGGTAGGATCTGGTGAAGG
AAAGCCCCAAGAGATGTCGTTGAAGGATAAAGGGAATGAGTTTTTCAAGG
CTGGGAACTACCTTAAAGCTGCTGCTCTTTACACTCAGGCCATTAAACAA
GACCCTTCAAATCCCACTCTTTATAGCAATCGAGCAGCAGCGTTTCTACA
TTTGGTTAAACTTAACAAAGCGCTGGCTGATGCTGAGACAACAATTACTT
TGAAACCTCAGTGGGAAAAGGGATATTTTCGAAAAGGATGCATTTTAGAG
GCTATGGAACGATATGACGATGCTTTAGCTGCCTTCCAAATAGCTTTGCA
GTACAACCCACAAAGTGCAGAAGTCTCAAGAAAAATTAAGAGACTTTCAC
AGCTTGCAAAAGATAAAAAGCGAGCTCAAGAAGTGCAAAACTTGCGATCC
AATGTAGATATAGCAAAAAGCTTGGAAACATTGAAATCTGAAATGTCTGA
AAAGTACAAATCGGAAGATAGTTGGAAAGAGATGTTTTCTTTTCTTATTG
AGACAATGGAAACAGCTGTAAAATCATGGCATGAGACTTCCAAAGTGGAT
CCTAGAGTCTACTTCCTTCTTGATAAGGAGAAGAGCCAAGCCGATAAATA
TGCTCCAGTTGTCAATATTGACAAGGCTTTTGAATCGCCTCATACGCACA
GCAGTTGTTTTTCATTTCTTAGGCAATATGCTGAAGATTCTTTCTCTAGA
GCAGCTTGTTTAGTTGCTCCTAAAAGTATCATAGCTTATCCACAGGTCTG
GAAAGGTCAGGGTTCAAGGAAGTGGAAGCATGGGCAACATGATGGTTTCT
TTGTTCAATTCGAGTCACCACTCTTGCGAAAACTATGGTTTATTTCGAGT
TCCAATGAGATGGGGAAGACACTGTGCAGGGATCCAGAGGTTCTAGATAT
AGGTGCACATGAAGTACTTCCACGCCTTTTCAAAGAAAATCTATCCAGTT
CCTCATGAGCTTTATCTTAGGCTGAAGGAAATTGCTAGGCATGCCGGTGG
ACTTTGATTGCGAGGTTTACATATGAAAAAAGGTACCAACAACATAGCGT
GCTTGCTTGTTACTTCGAGCTGTATATGAATTTCCTTTTATATGTGAAAA
CTCGCCAACTAGGTACACTTTTTCGAGTCACATAGCACTCATTTTCTTGG
TTTTGAAAAATTTTCTAAAGAAGTTTACAAGCCTTTTTTGAGTGATTACA
TTTTATGGGTGTTTGTTAAAACTGCTTTCTTGCCTTAAGTGATTCGCGGG
TTTCGGTTCTTGAGTTGGTTATATGTTGGAAGAACAGTAAAGCTAGTTGG
TGTAGAACTTATTCTCTTGTTTTCTGTTGTAATTATATGTAGAAAGTTAT
CGATAAGGGCTGATGTAGTTTTGTTTCATTTATGCATGAAGGGTTTCTTT
CTTTTAAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013105TPR_2
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding