g.arboreum_cottongen_reftransV1_0001270, g.arboreum_cottongen_reftransV1_0001270 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: M1ACQ6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402007686 PE=4 SV=1) HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0 Identity = 252/317 (79.50%), Postives = 286/317 (90.22%), Query Frame = 2 Query: 284 VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFK 1234 +G E K E SLKD+GNEFFKAGNYLKAAALYTQAIK+DPSN TLYSNRAAAFLHLVKL+KA+ADAE TI LKP+WEKGYFRKGCILEAMERY+DALAAFQIA +YNPQS+EVS+KIK L+QLAKDKKR +E++N+RSNVD+AK + LKSE+SEKY +EDSWKE FSF +ET+E AVKSWHETSKVDPRVYFLL+KEK+ +KYAP VNIDKAFESP TH++CFSFLRQYAEDSF++AACLV PKSII+YPQVWKGQGSRKWKHGQ+DG FVQFESPL+R+LWFI SS E GKTLCRDP LDI AHE+LPR+FK Sbjct: 1 MGESEAK-SETSLKDQGNEFFKAGNYLKAAALYTQAIKKDPSNATLYSNRAAAFLHLVKLSKAIADAEMTINLKPEWEKGYFRKGCILEAMERYEDALAAFQIASKYNPQSSEVSKKIKILTQLAKDKKRTEELENMRSNVDMAKHFDALKSELSEKYGAEDSWKEFFSFHVETVENAVKSWHETSKVDPRVYFLLNKEKTDTEKYAPAVNIDKAFESPQTHNNCFSFLRQYAEDSFAQAACLVTPKSIISYPQVWKGQGSRKWKHGQNDGIFVQFESPLVRRLWFIPSSTEKGKTLCRDPVPLDISAHEILPRVFK 316
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: Q8RXN1_ARATH (Carboxylate clamp-tetratricopeptide repeat protein OS=Arabidopsis thaliana GN=At1g04190 PE=2 SV=1) HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0 Identity = 252/323 (78.02%), Postives = 286/323 (88.54%), Query Frame = 2 Query: 269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237 MAE + G E SLK+KGNEFFKAGN+LKAAALYTQAIK DPSN TLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKGC+LEAME+Y+DALAAF++ALQYNPQS EVSRKIKRL QL K+K+RAQE++NLRSNVD+AK LE+ KSEMSE Y +E+ WKEMFSF++ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAF+SP THS+CF++LRQYAE+SFS+AACLV PKS I+YPQVWKG GSRKWK G +DG FVQFESP LRK+WFISSS E G+TLCR+P+ LDIGAHE+LPR+FKE Sbjct: 1 MAEKAGKATNGGEAEKSLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADAETTIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQKEKQRAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTPKSSISYPQVWKGVGSRKWKLGPNDGIFVQFESPSLRKVWFISSSKEKGQTLCREPQALDIGAHEILPRIFKE 323
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: V7BLJ3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G277400g PE=4 SV=1) HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0 Identity = 257/323 (79.57%), Postives = 282/323 (87.31%), Query Frame = 2 Query: 269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237 MAE + GSG EMSLKD+GNEFFK+G YLKAAALYTQAIKQDPSNPTLYSNRAAA L L KLNKAL DAE TI LKPQWEKGYFRKG ILEAM+RYDDALAAFQIALQYN QS EVS+KIKR++QL KD KRAQEV+N+RSNVD+AK L+T KSEM EKY SE+ WK +FSF++ET+ETAVKSW ETS VD RVYFLLD EK+Q DKYAPVVNIDKAFESPHTH++CFSFLRQYAE+SFS+AACLV PK+IIAYPQVWKGQGSRKWKH DGFFVQFESP LRKL+FI SS + G+ LCRDPE LDIG HEVLPRLFKE Sbjct: 1 MAETKEGSG----SEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNSQSQEVSKKIKRMNQLVKDSKRAQEVENMRSNVDVAKHLDTFKSEMVEKYGSEECWKHLFSFVVETIETAVKSWLETSTVDARVYFLLDTEKTQTDKYAPVVNIDKAFESPHTHANCFSFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAHSDGFFVQFESPSLRKLFFIPSSIDKGQILCRDPEGLDIGVHEVLPRLFKE 319
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A087HKV9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G036100 PE=4 SV=1) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 248/313 (79.23%), Postives = 282/313 (90.10%), Query Frame = 2 Query: 299 GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237 G E SLKDKGNEFFKAGN+LKAAALYTQAIK DP+N TLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKG +LEAME+Y+DALAAF++ALQYNPQSAEVSRKIKRL QL ++K+RAQE++NLR+NV++AK LE+ KSEMS Y +E+ WKEMF+FL+ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAFESPHTHS+CFS+LRQYAE+SFS+AACLVA KS I+YPQVWKGQGSRKWK GQ+DG FVQFESP +R +WFI SS E G+TLCRDP+ LDIGAHE+LPR+FKE Sbjct: 18 GGEAEKSLKDKGNEFFKAGNFLKAAALYTQAIKLDPTNATLYSNRAAAFLSLVKLSKALADAETTIKLNPQWEKGYFRKGSVLEAMEKYEDALAAFEMALQYNPQSAEVSRKIKRLGQLLQEKQRAQELENLRTNVNMAKHLESFKSEMSASYGTEECWKEMFAFLVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFESPHTHSNCFSYLRQYAEESFSKAACLVASKSSISYPQVWKGQGSRKWKLGQNDGIFVQFESPSIRNVWFIPSSKEKGQTLCRDPQALDIGAHEILPRIFKE 330
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: I3S8B3_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 250/314 (79.62%), Postives = 281/314 (89.49%), Query Frame = 2 Query: 296 EGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237 EG E+SLKD+GNEFFK+G YLKAAALYTQAIK+DPSNPTL+SNRAAA L L KLNKAL DAE TI LKP+WEKG+FRKGCILEAM+RYDDALA+FQIA QYNPQS EV ++IK+++QL KD KRAQEV+N+RSNVD+AK L+TLK EMSEKY SE+SWK+MFSFL+ETMETAVKSWHETS VD RVYFL DKEK+Q DKY P+VNIDKAFESP THSSCF F RQYAE+SFSRAACLVA K+II YPQVWKGQGSRKWKH Q+DGFFVQFESP +RKLWFI SSNE G+ LCRDPE+LD+GAHEV+PRLFKE Sbjct: 6 EGTSCEISLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLFSNRAAALLQLDKLNKALDDAEMTIKLKPEWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQEVLKRIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTLKPEMSEKYGSEESWKDMFSFLVETMETAVKSWHETSSVDARVYFLHDKEKTQTDKYPPIVNIDKAFESPETHSSCFPFFRQYAEESFSRAACLVAAKNIIFYPQVWKGQGSRKWKHAQNDGFFVQFESPSVRKLWFIPSSNEKGQILCRDPEILDVGAHEVVPRLFKE 319
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: HSOP3_ARATH (Hsp70-Hsp90 organizing protein 3 OS=Arabidopsis thaliana GN=HOP3 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.778e-17 Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 2 Query: 323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKR 643 ++KGN FFK Y +A Y++AIK++P++ YSNRAA + L L + L DAE I L P + KGY RKG I M+ YD A+ +Q L+++P++ E ++R Sbjct: 373 REKGNGFFKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAACYTKLGALPEGLKDAEKCIELDPSFTKGYSRKGAIQFFMKEYDKAMETYQEGLKHDPKNQEFLDGVRR 479 HSP 2 Score: 85.1149 bits (209), Expect = 3.942e-16 Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = 2 Query: 323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNP 610 K KGN F +G+Y A +T+AI P+N LYSNR+A++ L + +AL+DA+ TI LKP W KGY R G + ++D+A+ +++ L+ +P Sbjct: 6 KSKGNAAFSSGDYATAITHFTEAINLSPTNHILYSNRSASYASLHRYEEALSDAKKTIELKPDWSKGYSRLGAAFIGLSKFDEAVDSYKKGLEIDP 101
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: HSOP_WHEAT (Hsp70-Hsp90 organizing protein OS=Triticum aestivum GN=HOP PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.459e-16 Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 2 Query: 323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKR 643 ++KGNE FK Y +A Y +AI+++P + +YSNRAA + L + + L DAE I L P + KGY RKG + M+ Y+ A+ +Q L+Y+P + E+ I+R Sbjct: 396 REKGNEMFKQQKYPEAIKHYNEAIRRNPKDARVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKAMETYQAGLKYDPNNQELLDGIRR 502 HSP 2 Score: 72.0182 bits (175), Expect = 6.585e-12 Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 2 Query: 323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGC 541 K KGN F AG + +AA ++ AI P+N LYSNR+AA + + + ALADAE T+ LKP W KGY R G Sbjct: 6 KAKGNAAFSAGRFEEAAGHFSDAIALAPANHVLYSNRSAALASIHRYSDALADAEKTVELKPDWAKGYSRLGA 78
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.316e-15 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 2 Query: 320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQS 616 LKD+GN K NY A YTQAI+ DP+N Y NRAAA L A+ D E I + ++ K Y R G L AM ++++A+ ++Q AL +P++ Sbjct: 88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN 186
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.347e-15 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 2 Query: 320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQS 616 LKD+GN K NY A YTQAI+ DP+N Y NRAAA L A+ D E I + ++ K Y R G L AM ++++A+ ++Q AL +P++ Sbjct: 88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN 186
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.566e-15 Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 2 Query: 317 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIK 640 S K +GNE+F++ NY A +T+A+ DP N LYSNRAAA +HL ++++A+ D + +T+ P + K Y R+ E Y+DA+ ++ A +P++ E+ R IK Sbjct: 237 SKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIK 348
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: STIP1_DICDI (Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.536e-15 Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 2 Query: 308 QEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQY---NPQSAEVSRK----IKRLSQLAKDKKRAQEV 685 Q + K+KG E FK G + +A + +AI+++P + T+YSNR+AA+ L++ A+ DA+ I L+P + KGY RKG L AM Y AL + L+ NP+ ++SRK + +L D++R Q+ Sbjct: 378 QSIIEKNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLAIKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLTDEERLQQA 510 HSP 2 Score: 77.7962 bits (190), Expect = 1.014e-13 Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 2 Query: 320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEV 625 K++GN F + +Y A + QAI+ DPSN LYSNR+A+ L L K AL DA+ I LKP W KGY R+ L + R+++A + + L+ +P + ++ Sbjct: 11 FKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQQL 112
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: TTC28_HUMAN (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4) HSP 1 Score: 82.0333 bits (201), Expect = 8.914e-15 Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 329 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEV 625 + N+ G++ A LY +A+ DP N LYSNR+AA++ + + +KAL DA L P+W K YFR+G L+ + R+ DALAAF L +P+S ++ Sbjct: 64 QSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 162
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.396e-14 Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 2 Query: 320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIK 640 LKD+GN K NY A YTQAI+ DP+N Y NRAAA L A+ D E I + ++ K Y R G L A+ ++++A+ ++Q AL +P++ +K Sbjct: 88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLK 194
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: TTC28_MOUSE (Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 2.418e-14 Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 329 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEV 625 + N+ G++ A LY +A+ DP N LYSNR+AA++ + +KAL DA L P+W K YFR+G L+ + R+ DALAAF L +P+S ++ Sbjct: 58 QSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 156
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.006e-14 Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 2 Query: 314 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQ 652 + LK+KGN++FK G Y +A YT+ + DP NP L +NRA+A+ L K A +D I L + K Y R+G A+++ +DA ++ L+ P + E + ++++++Q Sbjct: 135 LVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQ 247 HSP 2 Score: 65.4698 bits (158), Expect = 8.594e-10 Identity = 35/121 (28.93%), Postives = 62/121 (51.24%), Query Frame = 2 Query: 284 VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRL 646 G +G+ + ++ KD GN FFK G Y +A YT+ I D +N L +NRA A+L + + +A D I L + K + R+G + + ++A F+ L P + + + ++ R+ Sbjct: 275 TGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRI 395 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001270 ID=g.arboreum_cottongen_reftransV1_0001270; Name=g.arboreum_cottongen_reftransV1_0001270; organism=Gossypium arboreum; type=contig; length=1709bpback to top |