g.arboreum_cottongen_reftransV1_0001270, g.arboreum_cottongen_reftransV1_0001270 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001270
Unique Nameg.arboreum_cottongen_reftransV1_0001270
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1709
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr7chromosomeg.arboreum_cottongen_reftransV1_0001270:1..1707 .
Chr7:37337523..37341663 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: M1ACQ6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402007686 PE=4 SV=1)

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 252/317 (79.50%), Postives = 286/317 (90.22%), Query Frame = 2
Query:  284 VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFK 1234
            +G  E K  E SLKD+GNEFFKAGNYLKAAALYTQAIK+DPSN TLYSNRAAAFLHLVKL+KA+ADAE TI LKP+WEKGYFRKGCILEAMERY+DALAAFQIA +YNPQS+EVS+KIK L+QLAKDKKR +E++N+RSNVD+AK  + LKSE+SEKY +EDSWKE FSF +ET+E AVKSWHETSKVDPRVYFLL+KEK+  +KYAP VNIDKAFESP TH++CFSFLRQYAEDSF++AACLV PKSII+YPQVWKGQGSRKWKHGQ+DG FVQFESPL+R+LWFI SS E GKTLCRDP  LDI AHE+LPR+FK
Sbjct:    1 MGESEAK-SETSLKDQGNEFFKAGNYLKAAALYTQAIKKDPSNATLYSNRAAAFLHLVKLSKAIADAEMTINLKPEWEKGYFRKGCILEAMERYEDALAAFQIASKYNPQSSEVSKKIKILTQLAKDKKRTEELENMRSNVDMAKHFDALKSELSEKYGAEDSWKEFFSFHVETVENAVKSWHETSKVDPRVYFLLNKEKTDTEKYAPAVNIDKAFESPQTHNNCFSFLRQYAEDSFAQAACLVTPKSIISYPQVWKGQGSRKWKHGQNDGIFVQFESPLVRRLWFIPSSTEKGKTLCRDPVPLDISAHEILPRVFK 316          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: Q8RXN1_ARATH (Carboxylate clamp-tetratricopeptide repeat protein OS=Arabidopsis thaliana GN=At1g04190 PE=2 SV=1)

HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0
Identity = 252/323 (78.02%), Postives = 286/323 (88.54%), Query Frame = 2
Query:  269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAE    +  G   E SLK+KGNEFFKAGN+LKAAALYTQAIK DPSN TLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKGC+LEAME+Y+DALAAF++ALQYNPQS EVSRKIKRL QL K+K+RAQE++NLRSNVD+AK LE+ KSEMSE Y +E+ WKEMFSF++ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAF+SP THS+CF++LRQYAE+SFS+AACLV PKS I+YPQVWKG GSRKWK G +DG FVQFESP LRK+WFISSS E G+TLCR+P+ LDIGAHE+LPR+FKE
Sbjct:    1 MAEKAGKATNGGEAEKSLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADAETTIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQKEKQRAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTPKSSISYPQVWKGVGSRKWKLGPNDGIFVQFESPSLRKVWFISSSKEKGQTLCREPQALDIGAHEILPRIFKE 323          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: V7BLJ3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G277400g PE=4 SV=1)

HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 257/323 (79.57%), Postives = 282/323 (87.31%), Query Frame = 2
Query:  269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAE + GSG     EMSLKD+GNEFFK+G YLKAAALYTQAIKQDPSNPTLYSNRAAA L L KLNKAL DAE TI LKPQWEKGYFRKG ILEAM+RYDDALAAFQIALQYN QS EVS+KIKR++QL KD KRAQEV+N+RSNVD+AK L+T KSEM EKY SE+ WK +FSF++ET+ETAVKSW ETS VD RVYFLLD EK+Q DKYAPVVNIDKAFESPHTH++CFSFLRQYAE+SFS+AACLV PK+IIAYPQVWKGQGSRKWKH   DGFFVQFESP LRKL+FI SS + G+ LCRDPE LDIG HEVLPRLFKE
Sbjct:    1 MAETKEGSG----SEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNSQSQEVSKKIKRMNQLVKDSKRAQEVENMRSNVDVAKHLDTFKSEMVEKYGSEECWKHLFSFVVETIETAVKSWLETSTVDARVYFLLDTEKTQTDKYAPVVNIDKAFESPHTHANCFSFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAHSDGFFVQFESPSLRKLFFIPSSIDKGQILCRDPEGLDIGVHEVLPRLFKE 319          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A087HKV9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G036100 PE=4 SV=1)

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 248/313 (79.23%), Postives = 282/313 (90.10%), Query Frame = 2
Query:  299 GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            G   E SLKDKGNEFFKAGN+LKAAALYTQAIK DP+N TLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKG +LEAME+Y+DALAAF++ALQYNPQSAEVSRKIKRL QL ++K+RAQE++NLR+NV++AK LE+ KSEMS  Y +E+ WKEMF+FL+ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAFESPHTHS+CFS+LRQYAE+SFS+AACLVA KS I+YPQVWKGQGSRKWK GQ+DG FVQFESP +R +WFI SS E G+TLCRDP+ LDIGAHE+LPR+FKE
Sbjct:   18 GGEAEKSLKDKGNEFFKAGNFLKAAALYTQAIKLDPTNATLYSNRAAAFLSLVKLSKALADAETTIKLNPQWEKGYFRKGSVLEAMEKYEDALAAFEMALQYNPQSAEVSRKIKRLGQLLQEKQRAQELENLRTNVNMAKHLESFKSEMSASYGTEECWKEMFAFLVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFESPHTHSNCFSYLRQYAEESFSKAACLVASKSSISYPQVWKGQGSRKWKLGQNDGIFVQFESPSIRNVWFIPSSKEKGQTLCRDPQALDIGAHEILPRIFKE 330          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: I3S8B3_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 250/314 (79.62%), Postives = 281/314 (89.49%), Query Frame = 2
Query:  296 EGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            EG   E+SLKD+GNEFFK+G YLKAAALYTQAIK+DPSNPTL+SNRAAA L L KLNKAL DAE TI LKP+WEKG+FRKGCILEAM+RYDDALA+FQIA QYNPQS EV ++IK+++QL KD KRAQEV+N+RSNVD+AK L+TLK EMSEKY SE+SWK+MFSFL+ETMETAVKSWHETS VD RVYFL DKEK+Q DKY P+VNIDKAFESP THSSCF F RQYAE+SFSRAACLVA K+II YPQVWKGQGSRKWKH Q+DGFFVQFESP +RKLWFI SSNE G+ LCRDPE+LD+GAHEV+PRLFKE
Sbjct:    6 EGTSCEISLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLFSNRAAALLQLDKLNKALDDAEMTIKLKPEWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQEVLKRIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTLKPEMSEKYGSEESWKDMFSFLVETMETAVKSWHETSSVDARVYFLHDKEKTQTDKYPPIVNIDKAFESPETHSSCFPFFRQYAEESFSRAACLVAAKNIIFYPQVWKGQGSRKWKHAQNDGFFVQFESPSVRKLWFIPSSNEKGQILCRDPEILDVGAHEVVPRLFKE 319          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: HSOP3_ARATH (Hsp70-Hsp90 organizing protein 3 OS=Arabidopsis thaliana GN=HOP3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.778e-17
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 2
Query:  323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKR 643
            ++KGN FFK   Y +A   Y++AIK++P++   YSNRAA +  L  L + L DAE  I L P + KGY RKG I   M+ YD A+  +Q  L+++P++ E    ++R
Sbjct:  373 REKGNGFFKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAACYTKLGALPEGLKDAEKCIELDPSFTKGYSRKGAIQFFMKEYDKAMETYQEGLKHDPKNQEFLDGVRR 479          

HSP 2 Score: 85.1149 bits (209), Expect = 3.942e-16
Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNP 610
            K KGN  F +G+Y  A   +T+AI   P+N  LYSNR+A++  L +  +AL+DA+ TI LKP W KGY R G     + ++D+A+ +++  L+ +P
Sbjct:    6 KSKGNAAFSSGDYATAITHFTEAINLSPTNHILYSNRSASYASLHRYEEALSDAKKTIELKPDWSKGYSRLGAAFIGLSKFDEAVDSYKKGLEIDP 101          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: HSOP_WHEAT (Hsp70-Hsp90 organizing protein OS=Triticum aestivum GN=HOP PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.459e-16
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKR 643
            ++KGNE FK   Y +A   Y +AI+++P +  +YSNRAA +  L  + + L DAE  I L P + KGY RKG +   M+ Y+ A+  +Q  L+Y+P + E+   I+R
Sbjct:  396 REKGNEMFKQQKYPEAIKHYNEAIRRNPKDARVYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKAMETYQAGLKYDPNNQELLDGIRR 502          

HSP 2 Score: 72.0182 bits (175), Expect = 6.585e-12
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGC 541
            K KGN  F AG + +AA  ++ AI   P+N  LYSNR+AA   + + + ALADAE T+ LKP W KGY R G 
Sbjct:    6 KAKGNAAFSAGRFEEAAGHFSDAIALAPANHVLYSNRSAALASIHRYSDALADAEKTVELKPDWAKGYSRLGA 78          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.316e-15
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQS 616
            LKD+GN   K  NY  A   YTQAI+ DP+N   Y NRAAA   L     A+ D E  I +  ++ K Y R G  L AM ++++A+ ++Q AL  +P++
Sbjct:   88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN 186          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.347e-15
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQS 616
            LKD+GN   K  NY  A   YTQAI+ DP+N   Y NRAAA   L     A+ D E  I +  ++ K Y R G  L AM ++++A+ ++Q AL  +P++
Sbjct:   88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN 186          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.566e-15
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  317 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIK 640
            S K +GNE+F++ NY  A   +T+A+  DP     N  LYSNRAAA +HL ++++A+ D  + +T+ P + K Y R+       E Y+DA+  ++ A   +P++ E+ R IK
Sbjct:  237 SKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIK 348          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: STIP1_DICDI (Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.536e-15
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  308 QEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQY---NPQSAEVSRK----IKRLSQLAKDKKRAQEV 685
            Q +  K+KG E FK G + +A   + +AI+++P + T+YSNR+AA+  L++   A+ DA+  I L+P + KGY RKG  L AM  Y  AL  +   L+    NP+  ++SRK    + +L     D++R Q+ 
Sbjct:  378 QSIIEKNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLAIKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLTDEERLQQA 510          

HSP 2 Score: 77.7962 bits (190), Expect = 1.014e-13
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEV 625
             K++GN  F + +Y  A   + QAI+ DPSN  LYSNR+A+ L L K   AL DA+  I LKP W KGY R+   L  + R+++A  + +  L+ +P + ++
Sbjct:   11 FKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQQL 112          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: TTC28_HUMAN (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 8.914e-15
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  329 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEV 625
            + N+    G++  A  LY +A+  DP N  LYSNR+AA++ + + +KAL DA     L P+W K YFR+G  L+ + R+ DALAAF   L  +P+S ++
Sbjct:   64 QSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 162          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.396e-14
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIK 640
            LKD+GN   K  NY  A   YTQAI+ DP+N   Y NRAAA   L     A+ D E  I +  ++ K Y R G  L A+ ++++A+ ++Q AL  +P++      +K
Sbjct:   88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLK 194          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: TTC28_MOUSE (Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.418e-14
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  329 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEV 625
            + N+    G++  A  LY +A+  DP N  LYSNR+AA++   + +KAL DA     L P+W K YFR+G  L+ + R+ DALAAF   L  +P+S ++
Sbjct:   58 QSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 156          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.006e-14
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  314 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQ 652
            + LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    I L   + K Y R+G    A+++ +DA   ++  L+  P + E + ++++++Q
Sbjct:  135 LVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQ 247          

HSP 2 Score: 65.4698 bits (158), Expect = 8.594e-10
Identity = 35/121 (28.93%), Postives = 62/121 (51.24%), Query Frame = 2
Query:  284 VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRL 646
             G  +G+ + ++ KD GN FFK G Y +A   YT+ I  D +N  L +NRA A+L + +  +A  D    I L   + K + R+G     + + ++A   F+  L   P + + + ++ R+
Sbjct:  275 TGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRI 395          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M1ACQ6_SOLTU0.000e+079.50Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
Q8RXN1_ARATH0.000e+078.02Carboxylate clamp-tetratricopeptide repeat protein... [more]
V7BLJ3_PHAVU0.000e+079.57Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A087HKV9_ARAAL0.000e+079.23Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
I3S8B3_MEDTR0.000e+079.62Uncharacterized protein OS=Medicago truncatula PE=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HSOP3_ARATH5.778e-1741.12Hsp70-Hsp90 organizing protein 3 OS=Arabidopsis th... [more]
HSOP_WHEAT1.459e-1639.25Hsp70-Hsp90 organizing protein OS=Triticum aestivu... [more]
SGTB_RAT3.316e-1540.40Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE3.347e-1540.40Small glutamine-rich tetratricopeptide repeat-cont... [more]
DNJC7_DICDI3.566e-1536.61DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]
STIP1_DICDI5.536e-1536.09Protein STIP1 homolog OS=Dictyostelium discoideum ... [more]
TTC28_HUMAN8.914e-1540.40Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
SGTB_HUMAN1.396e-1437.38Small glutamine-rich tetratricopeptide repeat-cont... [more]
TTC28_MOUSE2.418e-1440.40Tetratricopeptide repeat protein 28 OS=Mus musculu... [more]
RPAP3_MOUSE4.006e-1433.63RNA polymerase II-associated protein 3 OS=Mus musc... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 49..82
e-value: 8.1
score: 15.4
coord: 83..116
e-value: 6.8E-5
score: 32.3
coord: 15..48
e-value: 0.0071
score: 25.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 15..48
score: 9.352
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 49..82
score: 6.018
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 83..116
score: 9.765
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 16..144
e-value: 1.2E-33
score: 115.4
IPR011990Tetratricopeptide-like helical domainPFAMPF13414TPR_11coord: 22..60
e-value: 1.4E-9
score: 37.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 17..126
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 84..115
e-value: 8.6E-6
score: 25.4
NoneNo IPR availablePANTHERPTHR22904:SF289CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 13..193
NoneNo IPR availablePANTHERPTHR22904:SF289CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 252..311
NoneNo IPR availablePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 252..311
coord: 13..193
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 15..116
score: 21.994

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001270 ID=g.arboreum_cottongen_reftransV1_0001270; Name=g.arboreum_cottongen_reftransV1_0001270; organism=Gossypium arboreum; type=contig; length=1709bp
GTTTAGTTTACCCATAATTTTTTTAAGGAAAAAACCAGAGCTCACTCTTG
TAATTTTGCTTAGGGTTTTCTTTTAATCAAAACTAATCTGATTCTCCTTT
CTACTCCAAAATCACCAAAAGCCCAGATTTTGTTTAGAAATTAGAAAACT
CCATCGTTTATACCGCTGTTAAATACCTCCATAGACATCATCCCCTCAGA
AAAGTAGAAGCTTCTCTCTCCCATTAACCCTAACTACACAACAAATAAAA
TTACTTCAAAACAATAGGATGGCAGAAGCAGAGGTAGGATCTGGTGAAGG
AAAGCCCCAAGAGATGTCGTTGAAGGATAAAGGGAATGAGTTTTTCAAGG
CTGGGAACTACCTTAAAGCTGCTGCTCTTTACACTCAGGCCATTAAACAA
GACCCTTCAAATCCCACTCTTTATAGCAATCGAGCAGCAGCGTTTCTACA
TTTGGTTAAACTTAACAAAGCGCTGGCTGATGCTGAGACAACAATTACTT
TGAAACCTCAGTGGGAAAAGGGATATTTTCGAAAAGGATGCATTTTAGAG
GCTATGGAACGATATGACGATGCTTTAGCTGCCTTCCAAATAGCTTTGCA
GTACAACCCACAAAGTGCAGAAGTCTCAAGAAAAATTAAGAGACTTTCAC
AGCTTGCAAAAGATAAAAAGCGAGCTCAAGAAGTGCAAAACTTGCGATCC
AATGTAGATATAGCAAAAAGCTTGGAAACATTGAAATCTGAAATGTCTGA
AAAGTACAAATCGGAAGATAGTTGGAAAGAGATGTTTTCTTTTCTTATTG
AGACAATGGAAACAGCTGTAAAATCATGGCATGAGACTTCCAAAGTGGAT
CCTAGAGTCTACTTCCTTCTTGATAAGGAGAAGAGCCAAGCCGATAAATA
TGCTCCAGTTGTCAATATTGACAAGGCTTTTGAATCGCCTCATACGCACA
GCAGTTGTTTTTCATTTCTTAGGCAATATGCTGAAGATTCTTTCTCTAGA
GCAGCTTGTTTAGTTGCTCCTAAAAGTATCATAGCTTATCCACAGGTCTG
GAAAGGTCAGGGTTCAAGGAAGTGGAAGCATGGGCAACATGATGGTTTCT
TTGTTCAATTCGAGTCACCACTCTTGCGAAAACTATGGTTTATTTCGAGT
TCCAATGAGATGGGGAAGACACTGTGCAGGGATCCAGAGGTTCTAGATAT
AGGTGCACATGAAGTACTTCCACGCCTTTTCAAAGAAAATCTATCCAGTT
CCTCATGAGCTTTATCTTAGGCTGAAGGAAATTGCTAGGCATGCCGGTGG
ACTTTGATTGCGAGGTTTACATATGAAAAAAGGTACCAACAACATAGCGT
GCTTGCTTGTTACTTCGAGCTGTATATGAATTTCCTTTTATATGTGAAAA
CTCGCCAACTAGGTACACTTTTTCGAGTCACATAGCACTCATTTTCTTGG
TTTTGAAAAATTTTCTAAAGAAGTTTACAAGCCTTTTTTGAGTGATTACA
TTTTATGGGTGTTTGTTAAAACTGCTTTCTTGCCTTAAGTGATTCGCGGG
TTTCGGTTCTTGAGTTGGTTATATGTTGGAAGAACAGTAAAGCTAGTTGG
TGTAGAACTTATTCTCTTGTTTTCTGTTGTAATTATATGTAGAAAGTTAT
CGATAAGGGCTGATGTAGTTTTGTTTCATTTATGCATGAAGGGTTTCTTT
CTTTTAAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013105TPR_2
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding