g.arboreum_cottongen_reftransV1_0001270, g.arboreum_cottongen_reftransV1_0001270 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001270
Unique Nameg.arboreum_cottongen_reftransV1_0001270
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1709
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr7chromosomeg.arboreum_cottongen_reftransV1_0001270:1..1707 .
Chr7:37337523..37341663 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: D7T726_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03920 PE=4 SV=1)

HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 260/324 (80.25%), Postives = 292/324 (90.12%), Query Frame = 2
Query:  269 MAEAE-VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            M EA+  G    + +++SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKL KALADAETTITL P WEKGYFRKGC+LEAMERYDD+L AF+IAL++NPQS+EVSRKIK+L+QLA+DKKR QEV+N RSNVD+AK LETLKSE+SEKY   + WK MFSF +ET+ETA+KSWHETSKVD RVYFLLDKEK+Q DKYAPVVNIDKAFESPHTH SCF+FLR YAE+SFS+AACLVAPKSII+YPQVWKGQGSRKWKHGQ DGFFVQFESP L+KLWF+ SS E G+ LCRDPEVLDIG HE+LPR+FK+
Sbjct:    1 MEEADGKGRAASESEQVSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLTKALADAETTITLNPNWEKGYFRKGCVLEAMERYDDSLVAFRIALEHNPQSSEVSRKIKKLTQLARDKKRVQEVENKRSNVDMAKHLETLKSELSEKYGDAEHWKSMFSFTVETIETAIKSWHETSKVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHKSCFTFLRDYAEESFSKAACLVAPKSIISYPQVWKGQGSRKWKHGQSDGFFVQFESPSLQKLWFVPSSTEKGQLLCRDPEVLDIGVHELLPRIFKQ 324          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: M5Y4T5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008502mg PE=4 SV=1)

HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0
Identity = 263/327 (80.43%), Postives = 292/327 (89.30%), Query Frame = 2
Query:  269 MAEA----EVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAEA    + G+  G   E SLKDKGNE FKAGNYLKAAALYTQAIKQDP+NPTLYSNRAAAFL LVKL+KALADAETTI L PQWEKGYFRKGCILEAME+YDDALAAFQ ALQYN QS EVSRKIKR+SQLA+DKKRAQEV+ +RSNVD+A+ L+ LKSEMS K  SE+ W++MFSFL+ETMETA+KSWHETSKV+ RVYFLLDKEK+  +KYAP VNIDKAFESPHTH SCFSFLRQYAEDSFSRAACLV PKSI++YPQVWKGQGSRKWKHGQHDGFFVQFE+P LRKLWFI SS+E+G+ LCRDPE LDIGAHE++PRLFK+
Sbjct:    1 MAEAGGSDKAGASAGGGVE-SLKDKGNEHFKAGNYLKAAALYTQAIKQDPNNPTLYSNRAAAFLQLVKLSKALADAETTIKLNPQWEKGYFRKGCILEAMEQYDDALAAFQTALQYNSQSTEVSRKIKRISQLARDKKRAQEVEKMRSNVDMARQLDKLKSEMSGKRGSEECWEDMFSFLVETMETAIKSWHETSKVEARVYFLLDKEKTDTEKYAPAVNIDKAFESPHTHGSCFSFLRQYAEDSFSRAACLVTPKSIMSYPQVWKGQGSRKWKHGQHDGFFVQFETPFLRKLWFIPSSSELGQILCRDPEDLDIGAHELIPRLFKQ 326          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A0A0LNU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G223130 PE=4 SV=1)

HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0
Identity = 259/326 (79.45%), Postives = 286/326 (87.73%), Query Frame = 2
Query:  269 MAEAEVGSGEGKP---QEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAEAE GS  G      E SLKDKGNEFFKAGNYLKAAALYTQAIK DPSN  LYSNRAAAFLHLVKLNKALADAE TI L PQWEKGYFRKGCILEAME+YDDAL+AFQ ALQYNPQSAEVSRKIKR+SQL KDKKRAQEV+  RSN+D+ K L+ LKSE+SEKY SE+ WK++FSFL+ETME AV+SWHETS VD +VY+LLD EK+  +KYAPVVNIDKAFESPHTHS CF FLR+YAEDS SRAACLV PKS+I+YPQVWKGQGSRKWKHGQHDGFFVQ E+P LRKLWF+ SS+E+G+ LCRDPEVLDI AHE+LPR+FKE
Sbjct:    1 MAEAETGSATGNSGGVPEPSLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNHALYSNRAAAFLHLVKLNKALADAEMTIKLSPQWEKGYFRKGCILEAMEKYDDALSAFQTALQYNPQSAEVSRKIKRVSQLVKDKKRAQEVEKKRSNIDMTKHLDKLKSELSEKYGSEECWKDIFSFLVETMEAAVRSWHETSNVDAKVYYLLDNEKTDTEKYAPVVNIDKAFESPHTHSDCFQFLRKYAEDSVSRAACLVTPKSLISYPQVWKGQGSRKWKHGQHDGFFVQLETPSLRKLWFVPSSSELGRPLCRDPEVLDIAAHELLPRIFKE 326          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A0B2PR45_GLYSO (Heat shock protein STI OS=Glycine soja GN=glysoja_034314 PE=4 SV=1)

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 256/310 (82.58%), Postives = 281/310 (90.65%), Query Frame = 2
Query:  311 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKEN 1240
            EMSLKD+GNEFFK+G YLKAAALYTQAIKQDPSNPTLYSNRAAA L L KLNKAL DAE TI LKPQWEKGYFRKG ILEAM+RYDDALAAFQIALQYNPQS EV++KIK+++QL KD KRAQEV+N+RSNVD+AK L+T K+EMS KY  E+ WK++FSFL+ETMETAVKSWH+TS VD RVYFLLDKEK+  DKYAPVVNIDKAFESPHTH +CF+FLRQYAE+SFS+AACLV PK+IIAYPQVWKGQG RKWKH Q DGFFVQFESP LRKLWFI SSNE G+TLCRDPEVLDIGAHEVLPRLFKEN
Sbjct:   12 EMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNPQSQEVTKKIKKINQLMKDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGLEEGWKDLFSFLVETMETAVKSWHKTSSVDARVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGPRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTLCRDPEVLDIGAHEVLPRLFKEN 321          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A068TUS5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00026126001 PE=4 SV=1)

HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 258/318 (81.13%), Postives = 287/318 (90.25%), Query Frame = 2
Query:  284 VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            +G  E K  E SLKD+GNEFFK+GNYLKAAALYTQAIKQDP+N TLYSNRAAAFLHLVKLNKALADAETTITLKP WEKGYFRKGC+LEAMERYDDAL+AF++AL+YNPQS+EVSRKIKRLSQL K+KKRAQEV+++RSNVD+AK L+ LKSE+S KY +E+   E+FSFL+ETME AVKSWHE+SKVD RVYFLLDK+K+   KYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLV PKSII+YPQVWKGQGSRKWKHGQ DGFFVQFE+P +RKLWF+ SS E G+TLCRDP  LDI  HEVLPRLFKE
Sbjct:    1 MGESEAK-MEQSLKDQGNEFFKSGNYLKAAALYTQAIKQDPNNATLYSNRAAAFLHLVKLNKALADAETTITLKPDWEKGYFRKGCVLEAMERYDDALSAFEMALKYNPQSSEVSRKIKRLSQLEKEKKRAQEVESMRSNVDMAKHLDALKSELSGKYGAEEISGEIFSFLVETMEMAVKSWHESSKVDARVYFLLDKDKTDTQKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVTPKSIISYPQVWKGQGSRKWKHGQTDGFFVQFETPSIRKLWFLPSSTEKGQTLCRDPVALDISVHEVLPRLFKE 317          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A0B2NXV1_GLYSO (Heat shock protein STI OS=Glycine soja GN=glysoja_022876 PE=4 SV=1)

HSP 1 Score: 543.502 bits (1399), Expect = 0.000e+0
Identity = 260/323 (80.50%), Postives = 286/323 (88.54%), Query Frame = 2
Query:  269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAE + GSG     EMSLKD+GNEFFK+G YLKAAALYTQAIK DPSNPTLYSNRAAA L L KLNKAL DAE TI LKPQWEKGYFRKG ILEAM+RYDDALA+FQIALQYNPQS EVS+KIK+++QL KD KRAQEV+N+RSNVD+AK L+T K+EMS KY SE+  K++FSFL+ETMETAVKSWHETS VD +VYFLLDKEK+  DKYAPVVNIDKAFESPHTH +CF+FLRQYAE+SFS+AACLV PK+IIAYPQVWKGQGSRKWKH Q DGFFVQFESP LRKLWFI SSNE G+T CRDPEVLDIGAHEVLPRLFKE
Sbjct:    1 MAETKEGSG----SEMSLKDQGNEFFKSGKYLKAAALYTQAIKLDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALASFQIALQYNPQSQEVSKKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGSEECLKDLFSFLVETMETAVKSWHETSSVDAKVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTWCRDPEVLDIGAHEVLPRLFKE 319          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: C6TJ63_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 543.502 bits (1399), Expect = 0.000e+0
Identity = 260/323 (80.50%), Postives = 286/323 (88.54%), Query Frame = 2
Query:  269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAE + GSG     EMSLKD+GNEFFK+G YLKAAALYTQAIK DPSNPTLYSNRAAA L L KLNKAL DAE TI LKPQWEKGYFRKG ILEAM+RYDDALA+FQIALQYNPQS EVS+KIK+++QL KD KRAQEV+N+RSNVD+AK L+T K+EMS KY SE+  K++FSFL+ETMETAVKSWHETS VD +VYFLLDKEK+  DKYAPVVNIDKAFESPHTH +CF+FLRQYAE+SFS+AACLV PK+IIAYPQVWKGQGSRKWKH Q DGFFVQFESP LRKLWFI SSNE G+T CRDPEVLDIGAHEVLPRLFKE
Sbjct:    1 MAETKEGSG----SEMSLKDQGNEFFKSGKYLKAAALYTQAIKLDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALASFQIALQYNPQSQEVSKKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGSEECLKDLFSFLVETMETAVKSWHETSSVDAKVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTWCRDPEVLDIGAHEVLPRLFKE 319          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: R0IMB9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009715mg PE=4 SV=1)

HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 254/323 (78.64%), Postives = 292/323 (90.40%), Query Frame = 2
Query:  269 MAEAEVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            MAE+   +  G+  E SLKDKGNEFFKAGN+LKAAALYTQAIK DPSN TLYSNRAAAFL LVKL+KALADA+TTI L PQWEKGYFRKGC+LEAME+Y+DALAAF++ALQ+NPQS EVSRKIKRL QL KDK+RAQE++NLRSNVD+AK LE+ KSEMS+ Y +E+SWKEMFSF++ETMETAVKSWHETSKVD RVYFLLDKEK+Q DKYAP VNIDKAF+SP THS+CF++LRQYAE+SFS+AACLVAPKS I+YPQVWKGQGSRKWK GQ+DG FVQFESP +RK+WFISSS E G+TLCR+P+ LDIGAHE+LPR+FKE
Sbjct:    2 MAESGKATNGGEA-EKSLKDKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADADTTIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQHNPQSTEVSRKIKRLGQLQKDKQRAQELENLRSNVDMAKHLESFKSEMSDAYGTEESWKEMFSFIVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVAPKSSISYPQVWKGQGSRKWKLGQNDGIFVQFESPAIRKVWFISSSKEKGQTLCREPQALDIGAHEILPRIFKE 323          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: A0A072VSG1_MEDTR (RNA polymerase II-associated-like protein OS=Medicago truncatula GN=MTR_1g041435 PE=4 SV=1)

HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0
Identity = 252/314 (80.25%), Postives = 283/314 (90.13%), Query Frame = 2
Query:  296 EGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            EG   E+SLKD+GNEFFK+G YLKAAALYTQAIK+DPSNPTL+SNRAAA L L KLNKAL DAE TI LKP+WEKG+FRKGCILEAM+RYDDALA+FQIA QYNPQS EV +KIK+++QL KD KRAQEV+N+RSNVD+AK L+TLK EMSEKY SE+SWK+MFSFL+ETMETAVKSWHETS VD RVYFL DKEK+Q DKY P+VNIDKAFESP THSSCF FLRQYAE+SFSRAACLVA K+II+YPQVWKGQGSRKWKH Q+DGFFVQFESP +RKLWFI SSNE G+ LCRDPE+LD+GAHEV+PRLFKE
Sbjct:    6 EGTSCEISLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLFSNRAAALLQLDKLNKALDDAEMTIKLKPEWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQEVLKKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTLKPEMSEKYGSEESWKDMFSFLVETMETAVKSWHETSSVDARVYFLHDKEKTQTDKYPPIVNIDKAFESPETHSSCFPFLRQYAEESFSRAACLVAAKNIISYPQVWKGQGSRKWKHAQNDGFFVQFESPSVRKLWFIPSSNEKGQILCRDPEILDVGAHEVVPRLFKE 319          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Match: K4CVN1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g082540.2 PE=4 SV=1)

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 250/318 (78.62%), Postives = 286/318 (89.94%), Query Frame = 2
Query:  284 VGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKYKSEDSWKEMFSFLIETMETAVKSWHETSKVDPRVYFLLDKEKSQADKYAPVVNIDKAFESPHTHSSCFSFLRQYAEDSFSRAACLVAPKSIIAYPQVWKGQGSRKWKHGQHDGFFVQFESPLLRKLWFISSSNEMGKTLCRDPEVLDIGAHEVLPRLFKE 1237
            +G  + K  E SLKD+GNEFFKAGNYLKAAALYTQAIK+DPSN TLYSNRAAAFLHLVKL+KALADAE TI LKP+WEKGYFRKGCILEAMERY+DALAAF+IA +YNPQS+EVS+KIK L+QLAKDKKR +E++N+R+N+D+AK    LKSE+SEKY +ED WKE FSF +ET+E AVKSWHETSKVDPRVYFLL+KEK+  +KYAP VNIDKAFESPHTHS+CF+FLRQYAEDSF++AACLV PKSII+YPQVWKGQGSRKWKHGQ+DG FVQFESPL+RKLWFI SS E GKTLCRDP  LDI AHE+LPR+FK+
Sbjct:    1 MGESDAKA-ETSLKDQGNEFFKAGNYLKAAALYTQAIKKDPSNATLYSNRAAAFLHLVKLSKALADAEMTINLKPEWEKGYFRKGCILEAMERYEDALAAFRIASKYNPQSSEVSKKIKTLTQLAKDKKRTEELENMRTNIDMAKHFHALKSELSEKYGAEDGWKEFFSFHVETVEGAVKSWHETSKVDPRVYFLLNKEKTDTEKYAPAVNIDKAFESPHTHSNCFAFLRQYAEDSFAQAACLVTPKSIISYPQVWKGQGSRKWKHGQNDGIFVQFESPLVRKLWFIPSSTEKGKTLCRDPVALDISAHEILPRVFKQ 317          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.062e-13
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  314 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQ 652
            + LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    I L   + K Y R+G    A+++ +DA   +   L+  P + E + +++++ Q
Sbjct:  134 LVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQ 246          

HSP 2 Score: 63.5438 bits (153), Expect = 2.766e-9
Identity = 42/141 (29.79%), Postives = 70/141 (49.65%), Query Frame = 2
Query:  272 AEAEVGSGE---GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEV 685
            AE E  + E   G+ + ++ KD GN FFK G Y +A   YT+ I  D +N  L +NRA A+L + K  +A  D    I L   + K + R+G     + + ++A   F+  L   P + +   ++ R+ +   +K R  +V
Sbjct:  266 AEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKGRWDDV 406          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.402e-13
Identity = 37/113 (32.74%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  314 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQ 652
            + LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    + L   + K Y R+G    A+++ ++A   ++  L+  P + E + +++++SQ
Sbjct:  134 LVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQ 246          

HSP 2 Score: 65.4698 bits (158), Expect = 8.634e-10
Identity = 39/128 (30.47%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  281 EVGSGEGKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKD 664
            ++ + + K Q +S KD+GN FFK G Y +A   YT+ I  D +N  L +NRA A+L + K  +A  D    I L   + K + R+G     + + ++A   F+  L   P + +    +  LS++ K+
Sbjct:  272 QIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQA---VTELSKIKKE 396          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: STI1L_PLAF7 (STI1-like protein OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0324 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.219e-13
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  323 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKR----LSQLAKDKKRAQE 682
            K+KGNE+FK  ++  A   Y +AI+++P++  LYSNRAAA   L++   AL D    I L P + K Y RKG +   M+ Y  AL A+   L+ +P + E     +R    + +++K +K  +E
Sbjct:  382 KNKGNEYFKNNDFPNAKKEYDEAIRRNPNDAKLYSNRAAALTKLIEYPSALEDVMKAIELDPTFVKAYSRKGNLHFFMKDYYKALQAYNKGLELDPNNKECLEGYQRCAFKIDEMSKSEKVDEE 505          

HSP 2 Score: 70.8626 bits (172), Expect = 1.468e-11
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  299 GKPQEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVS---RKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMS 748
             K +   LK+ GN+ F+ G Y +A   ++ AI  DP +  LYSN + AF  L +  +AL  A   I++K  W KGY RKGC    + +  +A   +   L+ +P +  +     K++  + L    + AQ + +L + ++    L++ K E S
Sbjct:    3 NKEEAQRLKELGNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNKSLQDALSKVRNENML----ENAQLIAHLNNIIENDPQLKSYKEENS 151          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.608e-13
Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIKRLSQLAKDKKRAQEVQNLRSNVDIAKSLETLKSEMSEKY---KSEDSWKEMFSFLIETME 811
            LK + N++FKA +Y  A   Y+QAI+ +PSN   Y NR+ A+L       AL DA   I L  ++ KGY+R+     A+ ++  AL  ++  ++  P   +   K +  +++ K K   + +        +  SL+     + ++Y   K ED  K   SF+ E M+
Sbjct:   31 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG-KVTISFMKELMQ 196          
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.407e-13
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  320 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLNKALADAETTITLKPQWEKGYFRKGCILEAMERYDDALAAFQIALQYNPQSAEVSRKIK 640
            LK   NE FK   Y +A  LYTQAI+ +  N   Y+NRA A   L +   A+ D    I + P++ KGY+R+G    AM ++ DAL  FQ   +  P   + ++K+K
Sbjct:   17 LKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLK 123          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7T726_VITVI0.000e+080.25Putative uncharacterized protein OS=Vitis vinifera... [more]
M5Y4T5_PRUPE0.000e+080.43Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0A0LNU0_CUCSA0.000e+079.45Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A0B2PR45_GLYSO0.000e+082.58Heat shock protein STI OS=Glycine soja GN=glysoja_... [more]
A0A068TUS5_COFCA0.000e+081.13Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A0B2NXV1_GLYSO0.000e+080.50Heat shock protein STI OS=Glycine soja GN=glysoja_... [more]
C6TJ63_SOYBN0.000e+080.50Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
R0IMB9_9BRAS0.000e+078.64Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A072VSG1_MEDTR0.000e+080.25RNA polymerase II-associated-like protein OS=Medic... [more]
K4CVN1_SOLLC0.000e+078.62Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001270 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RPAP3_RAT1.062e-1333.63RNA polymerase II-associated protein 3 OS=Rattus n... [more]
RPAP3_HUMAN1.402e-1332.74RNA polymerase II-associated protein 3 OS=Homo sap... [more]
STI1L_PLAF73.219e-1335.48STI1-like protein OS=Plasmodium falciparum (isolat... [more]
PPP5_HUMAN3.608e-1328.74Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
PPP5_SOLLC5.407e-1337.38Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 49..82
e-value: 8.1
score: 15.4
coord: 83..116
e-value: 6.8E-5
score: 32.3
coord: 15..48
e-value: 0.0071
score: 25.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 15..48
score: 9.352
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 49..82
score: 6.018
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 83..116
score: 9.765
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 16..144
e-value: 1.2E-33
score: 115.4
IPR011990Tetratricopeptide-like helical domainPFAMPF13414TPR_11coord: 22..60
e-value: 1.4E-9
score: 37.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 17..126
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 84..115
e-value: 8.6E-6
score: 25.4
NoneNo IPR availablePANTHERPTHR22904:SF289CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 13..193
NoneNo IPR availablePANTHERPTHR22904:SF289CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 252..311
NoneNo IPR availablePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 252..311
coord: 13..193
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 15..116
score: 21.994

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001270 ID=g.arboreum_cottongen_reftransV1_0001270; Name=g.arboreum_cottongen_reftransV1_0001270; organism=Gossypium arboreum; type=contig; length=1709bp
GTTTAGTTTACCCATAATTTTTTTAAGGAAAAAACCAGAGCTCACTCTTG
TAATTTTGCTTAGGGTTTTCTTTTAATCAAAACTAATCTGATTCTCCTTT
CTACTCCAAAATCACCAAAAGCCCAGATTTTGTTTAGAAATTAGAAAACT
CCATCGTTTATACCGCTGTTAAATACCTCCATAGACATCATCCCCTCAGA
AAAGTAGAAGCTTCTCTCTCCCATTAACCCTAACTACACAACAAATAAAA
TTACTTCAAAACAATAGGATGGCAGAAGCAGAGGTAGGATCTGGTGAAGG
AAAGCCCCAAGAGATGTCGTTGAAGGATAAAGGGAATGAGTTTTTCAAGG
CTGGGAACTACCTTAAAGCTGCTGCTCTTTACACTCAGGCCATTAAACAA
GACCCTTCAAATCCCACTCTTTATAGCAATCGAGCAGCAGCGTTTCTACA
TTTGGTTAAACTTAACAAAGCGCTGGCTGATGCTGAGACAACAATTACTT
TGAAACCTCAGTGGGAAAAGGGATATTTTCGAAAAGGATGCATTTTAGAG
GCTATGGAACGATATGACGATGCTTTAGCTGCCTTCCAAATAGCTTTGCA
GTACAACCCACAAAGTGCAGAAGTCTCAAGAAAAATTAAGAGACTTTCAC
AGCTTGCAAAAGATAAAAAGCGAGCTCAAGAAGTGCAAAACTTGCGATCC
AATGTAGATATAGCAAAAAGCTTGGAAACATTGAAATCTGAAATGTCTGA
AAAGTACAAATCGGAAGATAGTTGGAAAGAGATGTTTTCTTTTCTTATTG
AGACAATGGAAACAGCTGTAAAATCATGGCATGAGACTTCCAAAGTGGAT
CCTAGAGTCTACTTCCTTCTTGATAAGGAGAAGAGCCAAGCCGATAAATA
TGCTCCAGTTGTCAATATTGACAAGGCTTTTGAATCGCCTCATACGCACA
GCAGTTGTTTTTCATTTCTTAGGCAATATGCTGAAGATTCTTTCTCTAGA
GCAGCTTGTTTAGTTGCTCCTAAAAGTATCATAGCTTATCCACAGGTCTG
GAAAGGTCAGGGTTCAAGGAAGTGGAAGCATGGGCAACATGATGGTTTCT
TTGTTCAATTCGAGTCACCACTCTTGCGAAAACTATGGTTTATTTCGAGT
TCCAATGAGATGGGGAAGACACTGTGCAGGGATCCAGAGGTTCTAGATAT
AGGTGCACATGAAGTACTTCCACGCCTTTTCAAAGAAAATCTATCCAGTT
CCTCATGAGCTTTATCTTAGGCTGAAGGAAATTGCTAGGCATGCCGGTGG
ACTTTGATTGCGAGGTTTACATATGAAAAAAGGTACCAACAACATAGCGT
GCTTGCTTGTTACTTCGAGCTGTATATGAATTTCCTTTTATATGTGAAAA
CTCGCCAACTAGGTACACTTTTTCGAGTCACATAGCACTCATTTTCTTGG
TTTTGAAAAATTTTCTAAAGAAGTTTACAAGCCTTTTTTGAGTGATTACA
TTTTATGGGTGTTTGTTAAAACTGCTTTCTTGCCTTAAGTGATTCGCGGG
TTTCGGTTCTTGAGTTGGTTATATGTTGGAAGAACAGTAAAGCTAGTTGG
TGTAGAACTTATTCTCTTGTTTTCTGTTGTAATTATATGTAGAAAGTTAT
CGATAAGGGCTGATGTAGTTTTGTTTCATTTATGCATGAAGGGTTTCTTT
CTTTTAAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013105TPR_2
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding