g.arboreum_cottongen_reftransV1_0021466, g.arboreum_cottongen_reftransV1_0021466 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A2Q2Z5_MEDTR (DNA-directed RNA polymerase II OS=Medicago truncatula GN=MTR_7g090220 PE=4 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 2.777e-107 Identity = 150/211 (71.09%), Postives = 184/211 (87.20%), Query Frame = -2 Query: 192 KCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 824 +CL D+GS ESHRY+LSRRTVLEML+DRGY++P+ EI LSL +FR IHGQSPD DRL+L+ TH T+ SKR+LVVF GPG+VKV+G+R IAG I ++E+LTGLILIVQN IT+QALKA++L SFKVEIFQITDLLVN TKHVLKP+H+VLT+ +K+ LL+KY I+EKQLPR+L+ DAIARYYG ++GQV+KVTY GEIT+ HVTYRCVW Sbjct: 38 QCLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: I3SSC0_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 2.415e-106 Identity = 149/211 (70.62%), Postives = 183/211 (86.73%), Query Frame = -2 Query: 192 KCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 824 +CL D+GS ESHRY+LSRRTVLEML+DRGY++P+ EI LSL +FR IHGQSPD DRL+L+ TH T+ SKR+LVVF GPG+VKV+G+R IAG I ++E+LTGLILIVQN IT+QALKA++L SFKVEI QITDLLVN TKHVLKP+H+VLT+ +K+ LL+KY I+EKQLPR+L+ DAIARYYG ++GQV+KVTY GEIT+ HVTYRCVW Sbjct: 38 QCLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: K4BRF5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g040170.2 PE=4 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 1.817e-105 Identity = 144/228 (63.16%), Postives = 188/228 (82.46%), Query Frame = -2 Query: 192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875 + G+ ++ DG N LG CL+ VDDG+ ESHRYFL+RRT+LEML+DRG+A+PN+EID +L EFR +GQ+PD +RL++S H+ D + ++LV+F GP VKV+ IR I I +KE+L+ LIL++QN +TN ALKA++LFSFKVEIFQITDLLVNITKHVLKP+H +LT+ EK++LL+KY++EEKQLPR+ +KDAIARYYG EKGQV+KVTY EI E+HVTYRCVW Sbjct: 3 LNGLAMDVDGEN---LGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: M1APX5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010646 PE=4 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 3.452e-105 Identity = 143/228 (62.72%), Postives = 188/228 (82.46%), Query Frame = -2 Query: 192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875 + G+ ++ DG N LG CL+ VDDG+ ESHRYFL+RRT+LEML+DRG+A+PN+EID +L EFR +GQ+PD +RL++S H+ D + ++LV+F GP VKV+ IR I I +KE+L+ LIL++QN +TN A+KA++LFSFKVEIFQITDLLVNITKHVLKP+H +LT+ EK++LL+KY++EEKQLPR+ +KDAIARYYG EKGQV+KVTY EI E+HVTYRCVW Sbjct: 3 LNGLAMDVDGDN---LGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: W9QWZ4_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Morus notabilis GN=L484_005227 PE=4 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 1.954e-104 Identity = 146/214 (68.22%), Postives = 183/214 (85.51%), Query Frame = -2 Query: 192 ALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 833 LG CLS L+D GS ESHRYFLSR T+LEML+DRGY+VP+++I+LSLH+FR I+GQ PD DRL+ SVTH +D SKR+LV+F PGVVKV+ +R IAG I ++ TLTGLIL++Q+ +TNQA KA++L FKVEIFQITDLL+NITKH+L+P+HRVLT+ EKQ+LL+KYSIE KQLPR+ K DAIARYYG EKGQV+K+ Y G IT+S++TYRCVW Sbjct: 18 TLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIYGQIPDVDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQSQMTNQAQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQLPRMSKNDAIARYYGLEKGQVVKIIYSGGITDSYITYRCVW 231
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RP5L1_ARATH (DNA-directed RNA polymerase subunit 5-like protein 1 OS=Arabidopsis thaliana GN=NRPB5L1 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 6.944e-24 Identity = 67/205 (32.68%), Postives = 113/205 (55.12%), Query Frame = -2 Query: 201 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPD-FDRLKLSVT-HKTDSSKRMLVVFYGPGV-VKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFS--FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 800 D E R F RRTVL+MLRDRGY + ++++L EF ++ + ++ L V+ +K + + VFY G V V I+ + + + I++V IT A A+ + +E+F+ +L+ NIT+H L ++ VL + K++LL Y++++ QLPR+L D +ARYYG ++GQV+K+ + + TYR Sbjct: 3 DMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYR 207
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPOH_PYRHO (DNA-directed RNA polymerase subunit H OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rpoH PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 8.248e-9 Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = -2 Query: 243 NITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKV 410 NI KHVL P+HR+L+E EK+ LL+KY I QLP++ D + G + G +I++ Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEI 63
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPOH_PYRAB (DNA-directed RNA polymerase subunit H OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpoH PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.097e-8 Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = -2 Query: 243 NITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKV 410 NI KHVL P+HR+L+E EK+ LL+KY I QLP++ D + G + G +I++ Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEI 63
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPOH_METTH (DNA-directed RNA polymerase subunit H OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpoH PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 7.441e-8 Identity = 25/72 (34.72%), Postives = 41/72 (56.94%), Query Frame = -2 Query: 195 NITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 410 I KH L P+H +L E E +R+L++ +QLP++ D +A+ G ++G ++K+ E VTYR V Sbjct: 4 EILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLV 75
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPOH_SULAC (DNA-directed RNA polymerase subunit H OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rpoH PE=1 SV=2) HSP 1 Score: 51.9878 bits (123), Expect = 2.790e-7 Identity = 25/73 (34.25%), Postives = 42/73 (57.53%), Query Frame = -2 Query: 195 VNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 413 ++I+ H L P+H +L E +L+++ I+ +QLP + D +A+ G + G +IK+T T VTYR V Sbjct: 9 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRKSPFTGESVTYRYV 81 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021466 ID=g.arboreum_cottongen_reftransV1_0021466; Name=g.arboreum_cottongen_reftransV1_0021466; organism=Gossypium arboreum; type=contig; length=960bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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