g.arboreum_cottongen_reftransV1_0021466, g.arboreum_cottongen_reftransV1_0021466 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A2Q2Z5_MEDTR (DNA-directed RNA polymerase II OS=Medicago truncatula GN=MTR_7g090220 PE=4 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 2.777e-107 Identity = 150/211 (71.09%), Postives = 184/211 (87.20%), Query Frame = -2 Query: 192 KCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 824 +CL D+GS ESHRY+LSRRTVLEML+DRGY++P+ EI LSL +FR IHGQSPD DRL+L+ TH T+ SKR+LVVF GPG+VKV+G+R IAG I ++E+LTGLILIVQN IT+QALKA++L SFKVEIFQITDLLVN TKHVLKP+H+VLT+ +K+ LL+KY I+EKQLPR+L+ DAIARYYG ++GQV+KVTY GEIT+ HVTYRCVW Sbjct: 38 QCLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: I3SSC0_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 2.415e-106 Identity = 149/211 (70.62%), Postives = 183/211 (86.73%), Query Frame = -2 Query: 192 KCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 824 +CL D+GS ESHRY+LSRRTVLEML+DRGY++P+ EI LSL +FR IHGQSPD DRL+L+ TH T+ SKR+LVVF GPG+VKV+G+R IAG I ++E+LTGLILIVQN IT+QALKA++L SFKVEI QITDLLVN TKHVLKP+H+VLT+ +K+ LL+KY I+EKQLPR+L+ DAIARYYG ++GQV+KVTY GEIT+ HVTYRCVW Sbjct: 38 QCLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: K4BRF5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g040170.2 PE=4 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 1.817e-105 Identity = 144/228 (63.16%), Postives = 188/228 (82.46%), Query Frame = -2 Query: 192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875 + G+ ++ DG N LG CL+ VDDG+ ESHRYFL+RRT+LEML+DRG+A+PN+EID +L EFR +GQ+PD +RL++S H+ D + ++LV+F GP VKV+ IR I I +KE+L+ LIL++QN +TN ALKA++LFSFKVEIFQITDLLVNITKHVLKP+H +LT+ EK++LL+KY++EEKQLPR+ +KDAIARYYG EKGQV+KVTY EI E+HVTYRCVW Sbjct: 3 LNGLAMDVDGEN---LGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: M1APX5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010646 PE=4 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 3.452e-105 Identity = 143/228 (62.72%), Postives = 188/228 (82.46%), Query Frame = -2 Query: 192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875 + G+ ++ DG N LG CL+ VDDG+ ESHRYFL+RRT+LEML+DRG+A+PN+EID +L EFR +GQ+PD +RL++S H+ D + ++LV+F GP VKV+ IR I I +KE+L+ LIL++QN +TN A+KA++LFSFKVEIFQITDLLVNITKHVLKP+H +LT+ EK++LL+KY++EEKQLPR+ +KDAIARYYG EKGQV+KVTY EI E+HVTYRCVW Sbjct: 3 LNGLAMDVDGDN---LGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: W9QWZ4_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Morus notabilis GN=L484_005227 PE=4 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 1.954e-104 Identity = 146/214 (68.22%), Postives = 183/214 (85.51%), Query Frame = -2 Query: 192 ALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 833 LG CLS L+D GS ESHRYFLSR T+LEML+DRGY+VP+++I+LSLH+FR I+GQ PD DRL+ SVTH +D SKR+LV+F PGVVKV+ +R IAG I ++ TLTGLIL++Q+ +TNQA KA++L FKVEIFQITDLL+NITKH+L+P+HRVLT+ EKQ+LL+KYSIE KQLPR+ K DAIARYYG EKGQV+K+ Y G IT+S++TYRCVW Sbjct: 18 TLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIYGQIPDVDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQSQMTNQAQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQLPRMSKNDAIARYYGLEKGQVVKIIYSGGITDSYITYRCVW 231
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos taurus GN=POLR2E PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.874e-31 Identity = 71/209 (33.97%), Postives = 116/209 (55.50%), Query Frame = -2 Query: 195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800 D E++R + R+T++++ DRGY V +D +L EF+A G P R L + V H D + +M V F V + I++ + +E +T +++VQ +T A ++L + K +E F +LL+NIT+H L P+H V+T+ E LL +Y + E QLPR+ D +ARY+G ++GQV+K+ E ++TYR V Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb5 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.392e-29 Identity = 72/199 (36.18%), Postives = 111/199 (55.78%), Query Frame = -2 Query: 201 RYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIH-GQSPDFDRLKLSVTHK--TDSSKRMLVV-FYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFS--FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 779 R F + +T +++ DRGY V E+DL+L +F+A+H G + DR LS K DS+K + + F V + +R + TG ILI N +T A K + + F +E FQ +DL+VNIT H L P+H +L+ EK+ LL +Y + E QLPR+ D +ARY G ++G+V+K+ E + + +YR Sbjct: 10 RVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYR 207
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_DEBHA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RPB5 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.690e-28 Identity = 73/212 (34.43%), Postives = 112/212 (52.83%), Query Frame = -2 Query: 201 VDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRM---------LVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFS-FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 806 ++D R + S +TV EM+RDRGY + EID+SL EFR+ S + + KL +++ + V F V + +R I+ K TG I I Q+ IT A K + S +E FQ DL+VNIT H L P+H L EK+ LL++Y ++E QLPR+ ++D + RY G ++G+V+K+ E + + +YR Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQSSITPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_ASHGO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPB5 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 4.793e-27 Identity = 74/211 (35.07%), Postives = 115/211 (54.50%), Query Frame = -2 Query: 201 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVS-------GIRLIAGL---ITSKETLTGLILIVQNHITNQALKAL-DLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 800 D R + + RTV EM+RDRGY + E+DLSL +F+A + S + K+ ++ +++ ++ L G V V GI+ + I K TG I I QN IT ALK L + +E F T L+VNIT H L P+H L++ EK+ LL++Y ++E QLPR+ + D +A Y G ++G+V+K+ E + + +YR Sbjct: 4 DNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKM-MSFQSNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTG-IFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_KLULA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPB5 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.983e-26 Identity = 73/203 (35.96%), Postives = 108/203 (53.20%), Query Frame = -2 Query: 201 RYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQS---PDFDRLKLSVTHKTDSSKR------MLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKV-EIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 779 R + + +TV EM+RDRGY + EIDLSL +F+A + S P + +S ++ + V F V V ++ IT K TG I I Q+ IT A K L + V E F L+VNIT H L P+H L+E EK+ LL++Y ++E QLPR+ + D +A Y G ++G+VIK+ E + + +YR Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_YARLI (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPB5 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.393e-25 Identity = 65/209 (31.10%), Postives = 109/209 (52.15%), Query Frame = -2 Query: 201 GSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEF---------RAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 797 S ++ + + RT E+++DRGY + + E++LS +F + I + K + V F V V +R I+ + TG IL+ +N++T A + + + ++ FQ TDLLVNITKHVL P H L+ EK+ LL++Y ++E QLPR+ ++D +ARY G +GQ++K+ E + + +YR Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATG-ILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_KLUMA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.345e-25 Identity = 72/203 (35.47%), Postives = 107/203 (52.71%), Query Frame = -2 Query: 201 RYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQS---PDFDRLKLSVTHKTDSSKR------MLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKV-EIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 779 R + + RTV EM+RDRGY + EIDLSL +F+ + S P + +S ++ + V F V V ++ IT K TG I I Q+ IT A K L + V E F L+VNIT H L P+H L++ EK+ LL++Y ++E QLPR+ + D +A Y G ++G+VIK+ E + + +YR Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_CANGA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPB5 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.876e-25 Identity = 68/203 (33.50%), Postives = 105/203 (51.72%), Query Frame = -2 Query: 201 RYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRM---------LVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 779 R + + RTV EM+RDRGY + E+DL+L +F+ + S + K+ + + M V F V V ++ I K+ TG I I QN+IT A+K + + +E F L+VNIT H L P+H L E EK LL++Y ++E QLPR+ + D +A Y G ++G+V+K+ E + +YR Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPTEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTG-IFIYQNNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.077e-24 Identity = 69/201 (34.33%), Postives = 104/201 (51.74%), Query Frame = -2 Query: 195 HRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFS----FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR-CV 782 +R R+TVL+ML DR Y + E + F + + L + K D + + V F V V+ I+ ++ ++ I++VQ +IT A +AL FS +E F +LLVNIT H L P+H +LT+ EK LL +Y ++E QLPR+ D +ARYYG +G V+K+ E ++TYR CV Sbjct: 5 NRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPDTPKVGVTQIKKYVDIMKDRQA-NRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 197
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB5 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.678e-24 Identity = 65/203 (32.02%), Postives = 106/203 (52.22%), Query Frame = -2 Query: 201 RYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQS---PDFDRLKLSVTHKTDSSKR------MLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYR 779 R + + RTV EM++DRGY + E++L L +F+A + S P + +S + + V F V V ++ I K TG I + QN+IT A+K + + +E F L+VNIT H L P+H L+ EK+ LL++Y ++E QLPR+ + D +A Y G ++G+V+K+ E + + +YR Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021466 ID=g.arboreum_cottongen_reftransV1_0021466; Name=g.arboreum_cottongen_reftransV1_0021466; organism=Gossypium arboreum; type=contig; length=960bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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