g.arboreum_cottongen_reftransV1_0021466, g.arboreum_cottongen_reftransV1_0021466 (contig) Gossypium arboreum

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A2Q2Z5_MEDTR (DNA-directed RNA polymerase II OS=Medicago truncatula GN=MTR_7g090220 PE=4 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.777e-107
Identity = 150/211 (71.09%), Postives = 184/211 (87.20%), Query Frame = -2

Query:  192 KCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 824
            +CL    D+GS ESHRY+LSRRTVLEML+DRGY++P+ EI LSL +FR IHGQSPD DRL+L+ TH T+ SKR+LVVF GPG+VKV+G+R IAG I ++E+LTGLILIVQN IT+QALKA++L SFKVEIFQITDLLVN TKHVLKP+H+VLT+ +K+ LL+KY I+EKQLPR+L+ DAIARYYG ++GQV+KVTY GEIT+ HVTYRCVW
Sbjct:   38 QCLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: I3SSC0_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 2.415e-106
Identity = 149/211 (70.62%), Postives = 183/211 (86.73%), Query Frame = -2

Query:  192 KCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 824
            +CL    D+GS ESHRY+LSRRTVLEML+DRGY++P+ EI LSL +FR IHGQSPD DRL+L+ TH T+ SKR+LVVF GPG+VKV+G+R IAG I ++E+LTGLILIVQN IT+QALKA++L SFKVEI QITDLLVN TKHVLKP+H+VLT+ +K+ LL+KY I+EKQLPR+L+ DAIARYYG ++GQV+KVTY GEIT+ HVTYRCVW
Sbjct:   38 QCLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: K4BRF5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g040170.2 PE=4 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.817e-105
Identity = 144/228 (63.16%), Postives = 188/228 (82.46%), Query Frame = -2

Query:  192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875
            + G+ ++ DG N   LG CL+  VDDG+ ESHRYFL+RRT+LEML+DRG+A+PN+EID +L EFR  +GQ+PD +RL++S  H+ D + ++LV+F GP  VKV+ IR I   I +KE+L+ LIL++QN +TN ALKA++LFSFKVEIFQITDLLVNITKHVLKP+H +LT+ EK++LL+KY++EEKQLPR+ +KDAIARYYG EKGQV+KVTY  EI E+HVTYRCVW
Sbjct:    3 LNGLAMDVDGEN---LGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: M1APX5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010646 PE=4 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 3.452e-105
Identity = 143/228 (62.72%), Postives = 188/228 (82.46%), Query Frame = -2

Query:  192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875
            + G+ ++ DG N   LG CL+  VDDG+ ESHRYFL+RRT+LEML+DRG+A+PN+EID +L EFR  +GQ+PD +RL++S  H+ D + ++LV+F GP  VKV+ IR I   I +KE+L+ LIL++QN +TN A+KA++LFSFKVEIFQITDLLVNITKHVLKP+H +LT+ EK++LL+KY++EEKQLPR+ +KDAIARYYG EKGQV+KVTY  EI E+HVTYRCVW
Sbjct:    3 LNGLAMDVDGDN---LGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: W9QWZ4_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Morus notabilis GN=L484_005227 PE=4 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 1.954e-104
Identity = 146/214 (68.22%), Postives = 183/214 (85.51%), Query Frame = -2

Query:  192 ALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 833
             LG CLS L+D GS ESHRYFLSR T+LEML+DRGY+VP+++I+LSLH+FR I+GQ PD DRL+ SVTH +D SKR+LV+F  PGVVKV+ +R IAG I ++ TLTGLIL++Q+ +TNQA KA++L  FKVEIFQITDLL+NITKH+L+P+HRVLT+ EKQ+LL+KYSIE KQLPR+ K DAIARYYG EKGQV+K+ Y G IT+S++TYRCVW
Sbjct:   18 TLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIYGQIPDVDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQSQMTNQAQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQLPRMSKNDAIARYYGLEKGQVVKIIYSGGITDSYITYRCVW 231          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPE5A_ARATH (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana GN=NRPE5A PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 5.800e-101
Identity = 138/210 (65.71%), Postives = 175/210 (83.33%), Query Frame = -2

Query:  192 CLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 821
            CLS  VD  S ESHRY+L+RR  L+MLRDRGY V + +I+LSLH+FR ++G+ PD DRL++S  H++DS+K++ +VF+G  +VKV+ IR +   I S+ET+TGLIL++QNH+TNQALKA++LFSFKVEIFQITDLLVNITKH LKPQH+VL + EK  LL+K+SIEEKQLPR+ KKDAI RYYG EKGQV+KV Y GE+TESHV +RCVW
Sbjct:   13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPD5B_ARATH (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana GN=NRPD5B PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.673e-91
Identity = 126/204 (61.76%), Postives = 169/204 (82.84%), Query Frame = -2

Query:  195 VDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 806
            +   S E H+Y+L+RRT +EMLRDRGY V + +I+LSL +FRA++G+ PD D L++S  H+ DSSK++ VVF G G+VKV+ +R+IA  + S+E +TGLIL++Q+HITNQALKA++LFSFKVE+F+ITDLLVN++KHVL+P+H+VL + EK+ LL+K+SIEEKQLPRL  KD I RYYG E GQV+KVTY  E++ESHVTYRCV
Sbjct:   14 ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPE5C_ARATH (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana GN=NRPE5C PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.305e-60
Identity = 97/219 (44.29%), Postives = 144/219 (65.75%), Query Frame = -2

Query:  195 DGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 851
            DG+N      C+S   D G  ES R++L+R T  EMLRDRGY V   E+ L+L EFR++ G+ P+ +RL++ V  ++D  K++LVVF G   + V  +R +   I++   L  +IL++Q+ + + A KAL  F F VE F I DLLVNITKH+ +P+  +L + EK++LL+K+++E+KQLP L +KD+  RYYG +K QV+K+TY  E     VTYRC+
Sbjct:   20 DGTN------CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.643e-34
Identity = 71/200 (35.50%), Postives = 120/200 (60.00%), Query Frame = -2

Query:  195 ESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFS--FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 788
            E  R +  ++T+++MLRDRGY + ++E+ ++  +F   HG +   + L      + D+S ++ + F     V V  +++    + S E +   IL+VQ ++T  A   +   S  F +E+FQ  ++LVNI +HVL P+H+VLT  EK+ LL++Y+++E QLPR+   D IARY+G ++GQV+K+    E    +VTYR V
Sbjct:    6 ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKS-ENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYV 204          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.428e-33
Identity = 73/209 (34.93%), Postives = 117/209 (55.98%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+T++++  DRGY V   E+D +L EFRA  G  P   R     L + V H  D + +M V F     V +  I++    +  +E +T  +++VQ  +T  A ++L   + K  +E F   +LL+NIT+H L P+H V+T+ E   LL +Y + E QLPR+   D +ARY+G ++GQV+K+    E    ++TYR V
Sbjct:    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 1.084e-32
Identity = 72/209 (34.45%), Postives = 117/209 (55.98%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+T++++  DRGY V   E+D +L EF+A  G  P   R     L + V H  D + +M V F     V +  I++    +  +E +T  +++VQ  +T  A ++L   + K  +E F   +LL+NIT+H L P+H V+T+ E   LL +Y + E QLPR+   D +ARY+G ++GQV+K+    E    ++TYR V
Sbjct:    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.201e-32
Identity = 72/209 (34.45%), Postives = 118/209 (56.46%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFS-FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+T++++  DRGY V   E+D +L EF+A  G  P   R     L + V H  D + +M V F     V +  I++    +  +E +T  +++VQ  +T  A ++L D+   + +E F   +LL+NIT+H L P+H V+T+ E   LL +Y + E QLPR+   D +ARY+G ++GQV+K+    E    ++TYR V
Sbjct:    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.201e-32
Identity = 72/209 (34.45%), Postives = 118/209 (56.46%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFS-FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+T++++  DRGY V   E+D +L EF+A  G  P   R     L + V H  D + +M V F     V +  I++    +  +E +T  +++VQ  +T  A ++L D+   + +E F   +LL+NIT+H L P+H V+T+ E   LL +Y + E QLPR+   D +ARY+G ++GQV+K+    E    ++TYR V
Sbjct:    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.218e-32
Identity = 70/209 (33.49%), Postives = 117/209 (55.98%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+TVL+M+ DRGY V   E+D  L  F+  +G  P   +     L + V H  D + +M V F     + +  I+ I   +  ++ ++  I++VQ  +T  A +++   + K  +E F   +L+VNIT+H L P+H V+T  EK  LL +Y +++ QLPR+ + D +ARY+G  +GQV+K+    E    ++TYR V
Sbjct:    3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210          

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.473e-32
Identity = 73/211 (34.60%), Postives = 118/211 (55.92%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLI--TSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+TVL+M+ DRGY V   E+D  L  F+   G  P   +     L + V H  D + +M V F  P   K+ GI+ I  +     ++ ++  I++VQ  +T  A +++   + K  +E F   +L+VNIT+H L P+H V+T  EK  LL +Y +++ QLPR+ + D +ARY+G  +GQV+K+    E    ++TYR V
Sbjct:    3 DDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHNDDPADQMFVFF--PEDTKI-GIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210