g.arboreum_cottongen_reftransV1_0017305, g.arboreum_cottongen_reftransV1_0017305 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: B9RSR5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678080 PE=4 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-17 Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK------YDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ +K+ GEK EEN + A +S+LT PLL KQDEK ++V +D+D+ + K +DAATNG +SEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 319 SSHMAAVVKSKAKSKIPMTTGEKQEENK--ATAGDSELTIPLLVKQDEKLDTVILDMDRVSRLSSNKQTSSQRFDAATNGLVQSSEDIEDGEVIGIITLEDVFEELLQEEIV 428
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: B9HY74_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s03120g PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.868e-17 Identity = 68/112 (60.71%), Postives = 81/112 (72.32%), Query Frame = -2 Query: 3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDK----SFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ G SK T+DG K E N+V+ ESQLTTPLL +EK +SV VD+D+ S +P L + DA+ G ++ SEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 318 SSHMAAVVKAKGKSKALPPTIDG-KEHEGNKVT-GKESQLTTPLLSMPNEKLDSVVVDMDRVSRPSRQPSLQRNDASIKGMTLLSEDIEDGEVIGIITLEDVFEELLQEEIV 427
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A068TUG2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00025983001 PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.804e-16 Identity = 66/112 (58.93%), Postives = 79/112 (70.54%), Query Frame = -2 Query: 3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP----LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ G S++ TVD KSE N ++ S+LTTPLL KQDEK ESV VDI+K +P L +A T+G T +D+E+GEVIGIITLEDVFEELLQEEIV Sbjct: 319 SSHMAAVVKAKGKSRHVPPTVDEGKSEGN--AVSSGNSRLTTPLLSKQDEKSESVIVDIEKPSRPASNHTLTYSEAVTHGLPSTVDDVEEGEVIGIITLEDVFEELLQEEIV 428
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A067KVC2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02095 PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.813e-16 Identity = 68/113 (60.18%), Postives = 76/113 (67.26%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFK-------PPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ K T GEK EEN + + +SQLTTPLL KQDEK +S+ VDID+ + P C A TNG SEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 319 SSHMAAVVKSKGKTKIPTSTGEKHEENK--ATSGDSQLTTPLLVKQDEKSDSLIVDIDRVSRLSKQTSSPRNC---AVTNGFPQPSEDIEDGEVIGIITLEDVFEELLQEEIV 426
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: M5XF43_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005189mg PE=4 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.877e-16 Identity = 70/114 (61.40%), Postives = 79/114 (69.30%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKN-ASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ K+ A +D EK E+NRVS+ +SQLTTPLL KQD KP+SV VDI + + P D ATNG SEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 319 SSHMAAVVKSKGKSKALPPIDAEK--EDNRVSDT-DSQLTTPLLSKQDGKPDSVIVDIPRVPRSPHSNRETFASHGDGATNGFPQLSEDIEDGEVIGIITLEDVFEELLQEEIV 429
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Match: Y4423_ARATH (DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-13 Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = -2 Query: 3 SSHMAAV--VRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAV V+G SK +T+ E S E+N SN S+LT PLL K++ +SV V IDK+ +A G S TSE+IEDG+VIGIITLEDVFEELLQEEIV Sbjct: 320 SSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSN--NSELTAPLLLKREGNHDSVIVRIDKANGQSFIS-EAGRQGFSHTSEEIEDGDVIGIITLEDVFEELLQEEIV 424 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0017305 ID=g.arboreum_cottongen_reftransV1_0017305; Name=g.arboreum_cottongen_reftransV1_0017305; organism=Gossypium arboreum; type=contig; length=321bpback to top |