g.arboreum_cottongen_reftransV1_0006769, g.arboreum_cottongen_reftransV1_0006769 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: A0A067LCE7_JATCU (MATE efflux family protein OS=Jatropha curcas GN=JCGZ_26747 PE=3 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 2.784e-117 Identity = 203/293 (69.28%), Postives = 249/293 (84.98%), Query Frame = -2 Query: 87 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 965 WGPLKAL ++S +N VGD+VLCSFLGYGIAGAAWATMVSQVVAGYMMI++LNKKG+NAFA S+P+L++L I I+ PVF+TMM+KV FY+L+IYFAT MGT +VAAHQV++QTY M TVWGEPLSQTAQSFMPEL+YG+NR+L KARMLLKSL++IGA LG +LG +GT VPW PN+FTPDQ VI EMHKVL PYF++LAVTP+ +LEGTL+AG DLKF+SL M+GC + G ++L+L +S G+GL GCW+ALVGFQW+RFFL LQRLLS G+LYS + + YK E L + Sbjct: 275 WGPLKALAVSSILNLVGDVVLCSFLGYGIAGAAWATMVSQVVAGYMMIEALNKKGYNAFAFSIPTLNELSMIAGIATPVFVTMMSKVVFYSLLIYFATAMGTNSVAAHQVLLQTYSMCTVWGEPLSQTAQSFMPELIYGVNRSLIKARMLLKSLVVIGATLGALLGAIGTIVPWFLPNLFTPDQNVIQEMHKVLLPYFLALAVTPSTHSLEGTLMAGRDLKFLSLSMTGCLSFGTLILMLTNSKGYGLVGCWFALVGFQWSRFFLALQRLLSLDGVLYSVDLSRYKIEKLTAS 567
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: M5VNV7_PRUPE (MATE efflux family protein OS=Prunus persica GN=PRUPE_ppa003755mg PE=3 SV=1) HSP 1 Score: 360.147 bits (923), Expect = 8.495e-117 Identity = 208/291 (71.48%), Postives = 254/291 (87.29%), Query Frame = -2 Query: 93 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLK 965 WGPLKAL +AS ING+GD+VLCSFLGYGIAGAAWATMVSQVVAGYMMI++LNKKG+NA+AISVPS ++ T+ ++APVF+TM++K+AF++L++YFAT+MGT AAHQVMIQT ++ TVWGEPLSQTAQSFMPEL+YG NR+L KARMLLKSL+I+GAI+G +LGI GT VPWLFPNIFTPDQK+I EMHKVL +F++LAVTPA L EGTLLAG DL+F+SL MSGC +LGA++LL VSS G+GL GCW+A+VGFQWAR FL L RL+SPTG+LYSE+ + Y E L+ Sbjct: 259 WGPLKALAVASVINGIGDVVLCSFLGYGIAGAAWATMVSQVVAGYMMIEALNKKGYNAYAISVPSPEEFLTVLGLAAPVFVTMISKIAFFSLVVYFATSMGTNITAAHQVMIQTLFICTVWGEPLSQTAQSFMPELIYGANRSLPKARMLLKSLVIVGAIIGSVLGIGGTCVPWLFPNIFTPDQKIIQEMHKVLIQFFLALAVTPAILCFEGTLLAGRDLRFISLSMSGCLSLGALLLLFVSSRGYGLAGCWWAVVGFQWARLFLSLGRLVSPTGILYSEDMSQYNLEELR 549
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: V4LU88_EUTSA (MATE efflux family protein OS=Eutrema salsugineum GN=EUTSA_v10000106mg PE=3 SV=1) HSP 1 Score: 357.451 bits (916), Expect = 1.172e-115 Identity = 204/293 (69.62%), Postives = 254/293 (86.69%), Query Frame = -2 Query: 87 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 965 WGPLKAL +ASAING+GD+VLC+FLGYGIAGAAWATMVSQ+VA YMM+D+LNKKG++AF++ VPS +L TIF ++APVFITMM+KV FY L++YFAT+MGT +AAHQVM+QTY M TVWGEPLSQTAQSFMPELL+GINRNL KARMLLKSL+IIGA LG+++G +GTA+PWLFP IFT D+ V EMHKV+ PYF++L++TP+ +LEGTLLAG DL+++SL M+GCF +G +VL+L+S+GGFGL GCWYALVGFQWARF L L RLLS G+L+SE+++ Y E +K A Sbjct: 273 WGPLKALTVASAINGIGDVVLCTFLGYGIAGAAWATMVSQIVAAYMMMDALNKKGYSAFSLCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVYFATSMGTSVIAAHQVMLQTYTMSTVWGEPLSQTAQSFMPELLFGINRNLPKARMLLKSLVIIGATLGIVVGTIGTAIPWLFPGIFTQDKVVTFEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCFAVGGLVLMLLSNGGFGLRGCWYALVGFQWARFSLALIRLLSRNGVLHSEDTSRYA-EKVKAA 564
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: A0A067DY00_CITSI (MATE efflux family protein OS=Citrus sinensis GN=CISIN_1g008932mg PE=3 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 5.168e-115 Identity = 207/292 (70.89%), Postives = 246/292 (84.25%), Query Frame = -2 Query: 87 GPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 962 GPLKAL +ASAING+GD+ LCSFLGYGIAGAAWATMVSQVV+ YMMI SLN KG+NAF+ SVPS ++L TI ++ PVFITM++KVAFY+LIIYFAT+MGT TVAAHQVMIQTY M +VWGEPLSQTAQSFMPEL+YG+NR+L KARMLLKSL++IG+ LGL+LG +G +VPW FPNIFT D+ VI EMHKVL PY +++ V+P+ +LEGTLLAG D+KF S+ MSGCF LGA+ +LL +S G+GLPGCW+ALV FQ ARF L L RLLSP G LYSE+ N YK E LK A Sbjct: 258 GPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGAL-VLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEKLKAA 548
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: A0A0B2RZD9_GLYSO (MATE efflux family protein OS=Glycine soja GN=glysoja_020571 PE=3 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 1.264e-114 Identity = 204/292 (69.86%), Postives = 248/292 (84.93%), Query Frame = -2 Query: 87 GPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 962 GPLKAL A+ IN G ++LC++LGYGI GAAWATMVSQVVA YMMI +LN KG+NA A S+PS +L TIF ++APVFIT+M+KVAFYAL+IYFAT+MGT+T+AAHQVM+QTY M TVWGEPLSQT+QSFMPEL+YG+NR+LSKARMLL+SL+IIGAILGL+LGI+GT+VPWLFPNIFTPD+ VI EMHKVL PYFI+LAVTP ++LEGTLLAG DLKF+SL MSGCF +G++ +L S +GL GCW++L FQWARF + LQRLLSP G+LYSE++ YK L+ A Sbjct: 258 GPLKALAAATVINVAGCVLLCTYLGYGIVGAAWATMVSQVVASYMMIQNLNMKGYNALAFSIPSGKELLTIFGLAAPVFITLMSKVAFYALLIYFATSMGTHTMAAHQVMVQTYLMCTVWGEPLSQTSQSFMPELIYGVNRSLSKARMLLRSLVIIGAILGLLLGIIGTSVPWLFPNIFTPDRMVIQEMHKVLIPYFIALAVTPPTVSLEGTLLAGRDLKFISLSMSGCFCVGSL-VLWALSSRYGLLGCWFSLALFQWARFSMALQRLLSPKGILYSEDTEQYKLLKLRTA 548
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy Swiss-Prot
Match: MATE4_ARATH (MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 2.521e-115 Identity = 203/293 (69.28%), Postives = 250/293 (85.32%), Query Frame = -2 Query: 87 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 965 WGPLKAL +ASAINGVGD+VLC+FLGYGIAGAAWATMVSQVVA YMM+D+LNKKG++AF+ VPS +L TIF ++APVFITMM+KV FY L++YFAT+MGT +AAHQVM+Q Y M TVWGEPLSQTAQSFMPELL+GINRNL KAR+LLKSL+IIGA LG+++G +GTAVPWLFP IFT D+ V EMHKV+ PYF++L++TP+ +LEGTLLAG DL+++SL M+GC + ++L+L+S+GGFGL GCWYALVGFQWARF L L RLLS G+LYSE+++ Y E +K A Sbjct: 268 WGPLKALAVASAINGVGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVYFATSMGTNIIAAHQVMLQIYTMSTVWGEPLSQTAQSFMPELLFGINRNLPKARVLLKSLVIIGATLGIVVGTIGTAVPWLFPGIFTRDKVVTSEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCLAVAGLLLMLLSNGGFGLRGCWYALVGFQWARFSLSLFRLLSRDGVLYSEDTSRYA-EKVKAA 559
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy Swiss-Prot
Match: EDS5_ARATH (Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 2.319e-92 Identity = 179/291 (61.51%), Postives = 231/291 (79.38%), Query Frame = -2 Query: 93 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLK 965 WGPLKAL A+ ING+GD +LC FLG GIAGAAWAT SQ+V+ YMM+DSLNK+G+NA++ ++PS +L I A++APVFI++ +K+AFY+ IIY AT+MGT+ +AAHQVM QTY M VWGEPLSQTAQSFMPE+LYG NRNL KAR LLKSL+IIGA LGL+LG++GTAVP LFP ++T D+ +I EMH++L P+F++L+ P ++LEGTLLAG DLKFVS +MS F +G + L+ V+ G+GL GCW+ LVGFQW RF L L+RLLSP G+L S+ + Y E +K Sbjct: 251 WGPLKALAAATIINGLGDTILCLFLGQGIAGAAWATTASQIVSAYMMMDSLNKEGYNAYSFAIPSPQELWKISALAAPVFISIFSKIAFYSFIIYCATSMGTHVLAAHQVMAQTYRMCNVWGEPLSQTAQSFMPEMLYGANRNLPKARTLLKSLMIIGATLGLVLGVIGTAVPGLFPGVYTHDKVIISEMHRLLIPFFMALSALPMTVSLEGTLLAGRDLKFVSSVMSSSFIIGCLTLMFVTRSGYGLLGCWFVLVGFQWGRFGLYLRRLLSPGGILNSDGPSPYTVEKIK 541 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006769 ID=g.arboreum_cottongen_reftransV1_0006769; Name=g.arboreum_cottongen_reftransV1_0006769; organism=Gossypium arboreum; type=contig; length=966bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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