g.arboreum_cottongen_reftransV1_0001670, g.arboreum_cottongen_reftransV1_0001670 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: I3S456_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 404.831 bits (1039), Expect = 1.903e-134 Identity = 200/289 (69.20%), Postives = 237/289 (82.01%), Query Frame = -1 Query: 194 ASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1060 AS+ + G + G+ SLKILSYNVWFREDLE KRMKAIGDL+ LHSPD+ICFQEVTP IYDIF+ S WW Y+CS+S D A R YFC+ LSK PVKSF + F NSIMGRELC+ EVE + G++ LV+AT+HLESPCP PPKWDQMYSKERVEQA A+N+L+ PNV+FGGDMNWDDKLDGQ+P DGWIDAW++LRP + GWTYDTKSNQMLS NRTL+KRLDRF+C+L+ K+ +++MIG++ IPGLSY KEK VRKE K L LPVLPSDHYGLLLTI+S+ Sbjct: 183 ASSMKILSSGKDVGT---SLKILSYNVWFREDLEPQKRMKAIGDLVHLHSPDLICFQEVTPNIYDIFKKSTWWSVYQCSVSADKAYSRPYFCMLLSKLPVKSFSNKSFSNSIMGRELCIAEVEAANGKS-LVIATSHLESPCPGPPKWDQMYSKERVEQANEAVNLLKKHPNVVFGGDMNWDDKLDGQYPSQDGWIDAWSQLRPDQSGWTYDTKSNQMLSGNRTLQKRLDRFICRLSDLKISSIDMIGMDAIPGLSYIKEKKVRKETKQLVLPVLPSDHYGLLLTITSK 467
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A068U886_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_12 OS=Coffea canephora GN=GSCOC_T00017795001 PE=3 SV=1) HSP 1 Score: 421.779 bits (1083), Expect = 2.319e-134 Identity = 208/316 (65.82%), Postives = 252/316 (79.75%), Query Frame = -1 Query: 194 RKIREPNLGNEDCIELGG--FRGIKASNKAVQIEGSNSGSIKAS--LKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129 RKI E ++G+ + + G FRG+KA+++ VQ S +G + + +KI+SYNVWFRE+LE+HKRM+A+GDLIQLHSPDIICFQEVTP IY++F+ S+WWK YRCS+SDD A RAYFC+QL K VKS+ PF NS+MGRELC+ EV + E TL+VAT+HLESPCPAPPKWDQMYSKER+ QAK AI LE PNVIF GDMNWDDKLDGQFPL DGW+DAW +LRP+E+GWTYDTKSN+MLS NRTL+KRLDRF+C L FK+ + +IG++ I GLSY KEK V+ E K L LPVLPSDHYGLLLTI Q Sbjct: 653 RKIWESSIGDANDLADSGNDFRGVKAASREVQCVASETGLDRGNKPVKIMSYNVWFREELEMHKRMEALGDLIQLHSPDIICFQEVTPNIYEVFQQSSWWKLYRCSVSDDEAFTRAYFCLQLCKLSVKSYSCRPFANSVMGRELCIAEVNVQT-ERTLIVATSHLESPCPAPPKWDQMYSKERINQAKEAIKFLEKNPNVIFCGDMNWDDKLDGQFPLPDGWVDAWVQLRPSENGWTYDTKSNKMLSGNRTLQKRLDRFVCNLRDFKISEIAIIGMDEIAGLSYCKEKKVKNEVKKLMLPVLPSDHYGLLLTICPQ 967
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: M0SUA5_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 400.593 bits (1028), Expect = 2.134e-133 Identity = 188/269 (69.89%), Postives = 222/269 (82.53%), Query Frame = -1 Query: 197 LKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISS 1003 +KILSYNVWFREDLE+ +RM+ +GDLI+ +SPD IC QEVTP IY+IF+ SNW K Y+CS+ ++ R YFC+Q+SK P+K F PF NS+MGRELC+ ++++ GG L+VAT+HLESPCPAPP+WDQMYSKERV QAK AIN+L++ PN IF GDMNWDDKLDG FPL DGWIDAW ELRP E+GWTYDTK+NQMLS NRTL+KRLDRF+C L+ FKV +EMIGVE IPGLSY KEK VRK K L LPVLPSDHYGLLLTISS Sbjct: 162 IKILSYNVWFREDLELRRRMQGLGDLIEQNSPDFICLQEVTPSIYEIFQESNWLKHYKCSVPQHLSTERPYFCMQMSKLPMKGFSCIPFTNSVMGRELCLADIDV-GGSKKLIVATSHLESPCPAPPRWDQMYSKERVAQAKEAINLLKDSPNAIFAGDMNWDDKLDGAFPLPDGWIDAWLELRPGENGWTYDTKANQMLSGNRTLQKRLDRFMCNLHDFKVDGIEMIGVEAIPGLSYCKEKKVRKVFKKLVLPVLPSDHYGLLLTISS 429
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: F6H7K7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g01630 PE=4 SV=1) HSP 1 Score: 392.504 bits (1007), Expect = 8.535e-133 Identity = 185/253 (73.12%), Postives = 217/253 (85.77%), Query Frame = -1 Query: 194 KRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 952 KRM+A+GDLIQLHSPD+ICFQEVTP IYD+F+ S WWK YRCS+ ++ A LR YFC+ LSK PVKSF + F NSIMGRELC+ E+E+ G+ LV+AT+HLESPCPAPPKWDQMYSKERV+QAK A+N+L PNVIFGGDMNWD+K DGQFPL DGW+DAW +LRP E+GWTYDTKSNQMLS NRTL+KRLDRF+C+L+ FK+ ++MIG+EPIPGLSY KEK VRKE + L LPVLPSDHYGLLLTISSQ Sbjct: 3 KRMQALGDLIQLHSPDLICFQEVTPNIYDVFQQSCWWKVYRCSVPNEMAHLRPYFCMLLSKLPVKSFSCKRFSNSIMGRELCIAELEVQAGKP-LVLATSHLESPCPAPPKWDQMYSKERVDQAKEALNLLTKNPNVIFGGDMNWDEKSDGQFPLPDGWVDAWADLRPGENGWTYDTKSNQMLSGNRTLQKRLDRFMCRLHDFKISKIDMIGMEPIPGLSYCKEKKVRKEMQQLVLPVLPSDHYGLLLTISSQ 254
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: M1BRD4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019871 PE=4 SV=1) HSP 1 Score: 391.349 bits (1004), Expect = 4.856e-131 Identity = 207/323 (64.09%), Postives = 243/323 (75.23%), Query Frame = -1 Query: 194 RKIREPNLGNEDC-IELG-GFRGIKAS-NKAVQIEGSN--------SGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129 RK RE LG E+ ++ G+RG+KA+ KA++I S S S LKIL+YNVWF D+E+HKRMKAIG LI LH+PD+ICFQEVTP IYDIF+ S WWK Y CSIS+ R YFC+QLSK VKS+ +PF NSIMGRELC+ E+E+ + TLVVAT+HLESPCP PPKWDQMYSKERVEQAK A+ +LE K NV+F GDMNWDDKLDGQFP TDGWIDAW +++P E GWTYDTKSN+MLSANRTL+KRLDR CKL F + V+MIG + IP L+Y KEK V+ E K L LPVLPSDHYGLLL IS Q Sbjct: 21 RKNREEPLGVEEAEVDAAMGYRGVKAAATKAIEISDSVEQEPGKTFSTSKSKVLKILTYNVWF-ADIEMHKRMKAIGSLIALHTPDVICFQEVTPEIYDIFQHSGWWKMYSCSISNVMELTRGYFCMQLSKLAVKSYSCKPFSNSIMGRELCIAEIEVEK-DMTLVVATSHLESPCPGPPKWDQMYSKERVEQAKEAVELLERKRNVVFCGDMNWDDKLDGQFPPTDGWIDAWGKMKPEEIGWTYDTKSNKMLSANRTLQKRLDRIACKLQDFCISDVKMIGKDAIPNLTYIKEKKVKSEVKRLTLPVLPSDHYGLLLEISPQ 341
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_XENTR (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis GN=tdp2 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.113e-18 Identity = 86/310 (27.74%), Postives = 144/310 (46.45%), Query Frame = -1 Query: 212 GNEDCIELGGFRGIKASNKAVQIEGSNSGSIK----ASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDKLDGQF-PLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1105 ++ CI+L G + ++A SNS ++K + L++N+ ++ V +R + + + L+SPD++ QEV P Y+ + K S + T + YF + L K VK +E P+ +++M R L + V +SG L+ T+HLES + +SKER++Q + + + + P VIFGGD N D+ + + + +D W+ L +P +T+DTK N+ L A R R DR + G + IP Y + L+ PSDH+GLL Sbjct: 90 ASDSCIDLTGDDLVVTKSEATT---SNSSTVKQEDESHFSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFLQEVIPPYYE------YLKKRAVSYTIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTVMMRNLLVANVNISGNSICLM--TSHLEST--------KDHSKERLKQLDIVLKKMMDAPPLATVIFGGDTNLRDQEVAKIGGMPNNILDVWDFLGKPEHCRYTWDTKVNKNLRAPYICRLRFDRIFFR--------ASQEGSQVIPQSLYL------AGTEKLDCGRFPSDHWGLL 366
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_XENLA (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus laevis GN=tdp2 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.487e-17 Identity = 87/316 (27.53%), Postives = 145/316 (45.89%), Query Frame = -1 Query: 212 LGNEDCIELGGFRGIKASNKAVQIEGSNSGSIK-----ASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDKLDGQF-PLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFL--CKLNGFKVCA--VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1108 + ++ CI+L + ++AV SNS ++K + L++N+ ++ V +R +A+ + L++PD++ QEV P + + K S T + YF + L K VK +E P+ +++M R L + V +SG L+ T+HLES + +SKER++Q + + + P VIFGGD N D+ + L + +D W L +P +T+DTK N L A T R R DR L + G +V + ++G E + + PSDH+GLL Sbjct: 86 VTSDACIDLTSDDLVATKSEAVT---SNSSTVKQQEDESHFTFLTWNIDGLDESNVAERARAVCSCLALYTPDVVFLQEVIPPYCE------YLKKRAVSYKIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTLMMRNLLVANVNISGNSICLM--TSHLEST--------KDHSKERLKQLDTVLKKMMDAPPSATVIFGGDTNLRDQEVAKIGGLPNTILDVWEFLGKPEHCRYTWDTKLNNNLRACYTSRLRFDRILYRASMEGSQVIPQFLNLVGTEKLDCGRF------------------PSDHWGLL 364
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_MOUSE (Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus GN=Tdp2 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.952e-17 Identity = 85/302 (28.15%), Postives = 132/302 (43.71%), Query Frame = -1 Query: 200 SNKAVQIEGSNSGSIKASLKILSYNVWFREDLE---VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPN---VIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1057 +N +E S SG+ +S+ W + L+ + +R + + + L+SPD++ QEV P + K S + T + YF I L K VK +E PF N+ M R L V L G E L+ T+HLES + +S ER+ Q K + ++ P+ VIF GD N D K G L D DAW L +P +T+DTK+N L + R DR + + +++++G+E + + PSDH+GLL T++ Sbjct: 103 ANDTTILEASPSGTPLEDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY------CAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLM--TSHLES--------TREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGG---LPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRF------------------PSDHWGLLCTLN 367
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_BOVIN (Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=TDP2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.587e-15 Identity = 79/280 (28.21%), Postives = 125/280 (44.64%), Query Frame = -1 Query: 203 ILSYNVWFREDLEVH---KRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNW-DDKLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDR--FLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTI 997 + S+ W + L+++ +R + + + L+SPD+I QEV P Y + K S T YF I L K VK +E PF N+ M R L V +SG E L + T+HLES + ++KER+ Q K+ + ++ P VIF GD N D ++ L + +D W L +P +T+DT+ N L + R DR F G + +++++G+E + + PSDH+GLL T+ Sbjct: 115 VFSFITWNIDGLDMNNLLERARGVCSYLTLYSPDVIFLQEVIPPYY------AYLKKKASSYKIITGREEGYFTAIMLKKSRVKFKSQEIIPFPNTQMMRNLLCVHVSVSGNE--LCLMTSHLEST--------RGHAKERMNQFKMVLEKMQEAPGSATVIFAGDTNLRDQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAANCKLRFDRIFFRAAAEGGHIIPQSLDLLGLEKLDCGRF------------------PSDHWGLLCTL 360
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_RAT (Tyrosyl-DNA phosphodiesterase 2 OS=Rattus norvegicus GN=Tdp2 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.483e-15 Identity = 86/302 (28.48%), Postives = 131/302 (43.38%), Query Frame = -1 Query: 200 SNKAVQIEGSNSGSIKASLKILSYNVWFREDLE---VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILE---NKPNVIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1057 +N +E S SG+ +S+ W + L+ + +R + + + L+SPD++ QEV P R K R + + T + YF I L K VK +E PF N+ M R L V L G E L+ T+HLES + +S ER+ Q K ++ + VIF GD N D K G L D DAW L +P +T+DTK+N L + R DR + + ++++IG+E + + PSDH+GLL T++ Sbjct: 99 ANDTTILETSPSGTPLEDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPSYCAYLR-----KRAR-TYNIITGNEEGYFTAILLKKGRVKFKGQEIIPFPNTKMMRNLLCVNVSLGGNEFCLM--TSHLEST--------RKHSAERINQLKTVFQKMQEATDSTTVIFAGDTNLRDQEVIKCGG---LPDNVFDAWEFLGKPKHCRYTWDTKANDNLRIPAACKHRFDRIFFRAEEGHLIPQSLDLIGLERLDCGRF------------------PSDHWGLLCTLN 363
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_CHICK (Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus GN=TDP2 PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.027e-14 Identity = 86/309 (27.83%), Postives = 135/309 (43.69%), Query Frame = -1 Query: 212 CIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFP-VKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDR--FLCKLNGFKVCA--VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1093 CI+L ASN + S +S ++++N+ + + +R + + + L+SPD++ QEV P I + GY ++ YF L K P VK ++E F + M R L + V +SG E L + T+HLES + +SKER++Q ++ +N ++ + VIFGGD N D KL G L D W L +P +T+DT SN L + R DR F G + +++IG+E + + PSDH+GLL Sbjct: 93 CIDLTA--DDTASNTSSSGADSKQQDDDSSFSLITWNIDGLDLGNLQERARGVCSYLALYSPDVVFLQEVIPPYLCILQ--RRAGGYTII----PGNVDGYFTAMLLKKPRVKVLKQEIIRFPTTSMMRNLLVVHVNISGNE--LCLMTSHLEST--------RDHSKERMKQLQIVLNKMQEESQSTTVIFGGDTNLRDSEVAKLGG---LPKNITDIWEFLGKPQHCRYTWDTSSNTNLRIESKCKLRFDRLYFRPAAEGGHIIPRNMDLIGLEKLDCGRF------------------PSDHWGLL 362
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_HUMAN (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.489e-13 Identity = 74/271 (27.31%), Postives = 115/271 (42.44%), Query Frame = -1 Query: 203 VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIF--RGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDK-LDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCA---------VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTI 958 + +R + + + L+SPD+I QEV P Y R SN+ T YF I L K VK +E PF ++ M R L V +SG E L + T+HLES + ++ ER+ Q K+ + ++ P VIF GD N D+ + L + +D W L +P +T+DT+ N L + R DR F+ A ++++G+E + + PSDH+GLL + Sbjct: 129 LSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNY--------EIITGHEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHVNVSGNE--LCLMTSHLES--------TRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIF-----FRAAAEEGHIIPRSLDLLGLEKLDCGRF------------------PSDHWGLLCNL 358
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_DANRE (Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio GN=tdp2 PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 1.187e-12 Identity = 89/325 (27.38%), Postives = 139/325 (42.77%), Query Frame = -1 Query: 197 NEDCIELGGFR---GIKASNKAVQIE-GSNSGSIKAS-LKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSN----WWKGYRCSISDDTASLRAYFC-IQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPN---VIFGGDMNW-DDKLDGQFPLTDGWIDAWNELRPAEDG-WTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC------AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISS 1102 N DCI+L I ++K Q E G+ ++ S L I+S+NV + L + R + + + L++PD++ QE+ P + +++G SDD YF I L K VK E F + M R L + +V SG + L + T+HLES + S+ER +Q +V + ++ P VIF GD N D ++ L G D W +L E +T+DTK+N + R R DR L K + +IG+E + YT SDH+G+ T ++ Sbjct: 85 NADCIDLTAEEPTCSITVNSKENQAENGTAKSEVEDSKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFFEG-----SDD-----GYFTGIMLRKSRVKFLESEIICFPTTQMMRNLLIAQVTFSGQK--LYLMTSHLESC--------KNQSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIF--LRSAKTAPPVTPDHMALIGMEKLDCGRYT------------------SDHWGIYCTFNT 369
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_CAEBR (5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis briggsae GN=CBG18823 PE=3 SV=2) HSP 1 Score: 60.4622 bits (145), Expect = 7.989e-9 Identity = 67/238 (28.15%), Postives = 107/238 (44.96%), Query Frame = -1 Query: 368 NKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPM-IYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSK-FPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAIN----ILENKPN--VIFGGDMNWDDKLDGQFPLTDGWIDAWNELR-PAEDGWTYDTKSNQMLSANRTLRKRLDR 1054 N+AV S++G L ++S+N+ + + RMKA+ +++ +PDI+ QEV + I + + +K Y + + Y I +SK F V+ F NS M R L + E + G + LV THLES + + +R+ Q ++ I+ N P + FGGD+N D+ P DG +DAW + WT+DT N + R DR Sbjct: 80 NEAVMGPSSSAG---FELSLMSWNIDGLDGRSLATRMKAVATIVKKVNPDILFLQEVVDRDLEPIDKLQSLYKIYYSN-----KGCQYYTAILVSKMFEVEKHDVVHFQNSGMYRTLQIVEGSIGGMKVFLV--NTHLESM--------RDHRAQRMAQFSFCMDRCAEIIANNPGCFLFFGGDLNLRDEEISSIP--DGVLDAWVSAGCDTKTKWTWDTYKNDNKQGFNGAKMRFDR 297 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 9
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001670 ID=g.arboreum_cottongen_reftransV1_0001670; Name=g.arboreum_cottongen_reftransV1_0001670; organism=Gossypium arboreum; type=contig; length=1129bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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