g.arboreum_cottongen_reftransV1_0001670, g.arboreum_cottongen_reftransV1_0001670 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001670
Unique Nameg.arboreum_cottongen_reftransV1_0001670
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0001670:1..1129 .
Chr7:14098541..14100197 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: I3S456_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 1.903e-134
Identity = 200/289 (69.20%), Postives = 237/289 (82.01%), Query Frame = -1
Query:  194 ASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1060
            AS+  +   G + G+   SLKILSYNVWFREDLE  KRMKAIGDL+ LHSPD+ICFQEVTP IYDIF+ S WW  Y+CS+S D A  R YFC+ LSK PVKSF  + F NSIMGRELC+ EVE + G++ LV+AT+HLESPCP PPKWDQMYSKERVEQA  A+N+L+  PNV+FGGDMNWDDKLDGQ+P  DGWIDAW++LRP + GWTYDTKSNQMLS NRTL+KRLDRF+C+L+  K+ +++MIG++ IPGLSY KEK VRKE K L LPVLPSDHYGLLLTI+S+
Sbjct:  183 ASSMKILSSGKDVGT---SLKILSYNVWFREDLEPQKRMKAIGDLVHLHSPDLICFQEVTPNIYDIFKKSTWWSVYQCSVSADKAYSRPYFCMLLSKLPVKSFSNKSFSNSIMGRELCIAEVEAANGKS-LVIATSHLESPCPGPPKWDQMYSKERVEQANEAVNLLKKHPNVVFGGDMNWDDKLDGQYPSQDGWIDAWSQLRPDQSGWTYDTKSNQMLSGNRTLQKRLDRFICRLSDLKISSIDMIGMDAIPGLSYIKEKKVRKETKQLVLPVLPSDHYGLLLTITSK 467          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A068U886_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_12 OS=Coffea canephora GN=GSCOC_T00017795001 PE=3 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 2.319e-134
Identity = 208/316 (65.82%), Postives = 252/316 (79.75%), Query Frame = -1
Query:  194 RKIREPNLGNEDCIELGG--FRGIKASNKAVQIEGSNSGSIKAS--LKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129
            RKI E ++G+ + +   G  FRG+KA+++ VQ   S +G  + +  +KI+SYNVWFRE+LE+HKRM+A+GDLIQLHSPDIICFQEVTP IY++F+ S+WWK YRCS+SDD A  RAYFC+QL K  VKS+   PF NS+MGRELC+ EV +   E TL+VAT+HLESPCPAPPKWDQMYSKER+ QAK AI  LE  PNVIF GDMNWDDKLDGQFPL DGW+DAW +LRP+E+GWTYDTKSN+MLS NRTL+KRLDRF+C L  FK+  + +IG++ I GLSY KEK V+ E K L LPVLPSDHYGLLLTI  Q
Sbjct:  653 RKIWESSIGDANDLADSGNDFRGVKAASREVQCVASETGLDRGNKPVKIMSYNVWFREELEMHKRMEALGDLIQLHSPDIICFQEVTPNIYEVFQQSSWWKLYRCSVSDDEAFTRAYFCLQLCKLSVKSYSCRPFANSVMGRELCIAEVNVQT-ERTLIVATSHLESPCPAPPKWDQMYSKERINQAKEAIKFLEKNPNVIFCGDMNWDDKLDGQFPLPDGWVDAWVQLRPSENGWTYDTKSNKMLSGNRTLQKRLDRFVCNLRDFKISEIAIIGMDEIAGLSYCKEKKVKNEVKKLMLPVLPSDHYGLLLTICPQ 967          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: M0SUA5_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 2.134e-133
Identity = 188/269 (69.89%), Postives = 222/269 (82.53%), Query Frame = -1
Query:  197 LKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISS 1003
            +KILSYNVWFREDLE+ +RM+ +GDLI+ +SPD IC QEVTP IY+IF+ SNW K Y+CS+    ++ R YFC+Q+SK P+K F   PF NS+MGRELC+ ++++ GG   L+VAT+HLESPCPAPP+WDQMYSKERV QAK AIN+L++ PN IF GDMNWDDKLDG FPL DGWIDAW ELRP E+GWTYDTK+NQMLS NRTL+KRLDRF+C L+ FKV  +EMIGVE IPGLSY KEK VRK  K L LPVLPSDHYGLLLTISS
Sbjct:  162 IKILSYNVWFREDLELRRRMQGLGDLIEQNSPDFICLQEVTPSIYEIFQESNWLKHYKCSVPQHLSTERPYFCMQMSKLPMKGFSCIPFTNSVMGRELCLADIDV-GGSKKLIVATSHLESPCPAPPRWDQMYSKERVAQAKEAINLLKDSPNAIFAGDMNWDDKLDGAFPLPDGWIDAWLELRPGENGWTYDTKANQMLSGNRTLQKRLDRFMCNLHDFKVDGIEMIGVEAIPGLSYCKEKKVRKVFKKLVLPVLPSDHYGLLLTISS 429          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: F6H7K7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g01630 PE=4 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 8.535e-133
Identity = 185/253 (73.12%), Postives = 217/253 (85.77%), Query Frame = -1
Query:  194 KRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 952
            KRM+A+GDLIQLHSPD+ICFQEVTP IYD+F+ S WWK YRCS+ ++ A LR YFC+ LSK PVKSF  + F NSIMGRELC+ E+E+  G+  LV+AT+HLESPCPAPPKWDQMYSKERV+QAK A+N+L   PNVIFGGDMNWD+K DGQFPL DGW+DAW +LRP E+GWTYDTKSNQMLS NRTL+KRLDRF+C+L+ FK+  ++MIG+EPIPGLSY KEK VRKE + L LPVLPSDHYGLLLTISSQ
Sbjct:    3 KRMQALGDLIQLHSPDLICFQEVTPNIYDVFQQSCWWKVYRCSVPNEMAHLRPYFCMLLSKLPVKSFSCKRFSNSIMGRELCIAELEVQAGKP-LVLATSHLESPCPAPPKWDQMYSKERVDQAKEALNLLTKNPNVIFGGDMNWDEKSDGQFPLPDGWVDAWADLRPGENGWTYDTKSNQMLSGNRTLQKRLDRFMCRLHDFKISKIDMIGMEPIPGLSYCKEKKVRKEMQQLVLPVLPSDHYGLLLTISSQ 254          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: M1BRD4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019871 PE=4 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 4.856e-131
Identity = 207/323 (64.09%), Postives = 243/323 (75.23%), Query Frame = -1
Query:  194 RKIREPNLGNEDC-IELG-GFRGIKAS-NKAVQIEGSN--------SGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129
            RK RE  LG E+  ++   G+RG+KA+  KA++I  S         S S    LKIL+YNVWF  D+E+HKRMKAIG LI LH+PD+ICFQEVTP IYDIF+ S WWK Y CSIS+     R YFC+QLSK  VKS+  +PF NSIMGRELC+ E+E+   + TLVVAT+HLESPCP PPKWDQMYSKERVEQAK A+ +LE K NV+F GDMNWDDKLDGQFP TDGWIDAW +++P E GWTYDTKSN+MLSANRTL+KRLDR  CKL  F +  V+MIG + IP L+Y KEK V+ E K L LPVLPSDHYGLLL IS Q
Sbjct:   21 RKNREEPLGVEEAEVDAAMGYRGVKAAATKAIEISDSVEQEPGKTFSTSKSKVLKILTYNVWF-ADIEMHKRMKAIGSLIALHTPDVICFQEVTPEIYDIFQHSGWWKMYSCSISNVMELTRGYFCMQLSKLAVKSYSCKPFSNSIMGRELCIAEIEVEK-DMTLVVATSHLESPCPGPPKWDQMYSKERVEQAKEAVELLERKRNVVFCGDMNWDDKLDGQFPPTDGWIDAWGKMKPEEIGWTYDTKSNKMLSANRTLQKRLDRIACKLQDFCISDVKMIGKDAIPNLTYIKEKKVKSEVKRLTLPVLPSDHYGLLLEISPQ 341          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_XENTR (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis GN=tdp2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.113e-18
Identity = 86/310 (27.74%), Postives = 144/310 (46.45%), Query Frame = -1
Query:  212 GNEDCIELGGFRGIKASNKAVQIEGSNSGSIK----ASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDKLDGQF-PLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1105
             ++ CI+L G   +   ++A     SNS ++K    +    L++N+   ++  V +R + +   + L+SPD++  QEV P  Y+      + K    S +  T +   YF  + L K  VK   +E  P+ +++M R L +  V +SG    L+  T+HLES         + +SKER++Q  + +  + + P    VIFGGD N  D+   +   + +  +D W+ L +P    +T+DTK N+ L A    R R DR   +            G + IP   Y          + L+    PSDH+GLL
Sbjct:   90 ASDSCIDLTGDDLVVTKSEATT---SNSSTVKQEDESHFSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFLQEVIPPYYE------YLKKRAVSYTIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTVMMRNLLVANVNISGNSICLM--TSHLEST--------KDHSKERLKQLDIVLKKMMDAPPLATVIFGGDTNLRDQEVAKIGGMPNNILDVWDFLGKPEHCRYTWDTKVNKNLRAPYICRLRFDRIFFR--------ASQEGSQVIPQSLYL------AGTEKLDCGRFPSDHWGLL 366          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_XENLA (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus laevis GN=tdp2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.487e-17
Identity = 87/316 (27.53%), Postives = 145/316 (45.89%), Query Frame = -1
Query:  212 LGNEDCIELGGFRGIKASNKAVQIEGSNSGSIK-----ASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDKLDGQF-PLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFL--CKLNGFKVCA--VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1108
            + ++ CI+L     +   ++AV    SNS ++K     +    L++N+   ++  V +R +A+   + L++PD++  QEV P   +      + K    S    T +   YF  + L K  VK   +E  P+ +++M R L +  V +SG    L+  T+HLES         + +SKER++Q    +  + + P    VIFGGD N  D+   +   L +  +D W  L +P    +T+DTK N  L A  T R R DR L    + G +V    + ++G E +    +                  PSDH+GLL
Sbjct:   86 VTSDACIDLTSDDLVATKSEAVT---SNSSTVKQQEDESHFTFLTWNIDGLDESNVAERARAVCSCLALYTPDVVFLQEVIPPYCE------YLKKRAVSYKIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTLMMRNLLVANVNISGNSICLM--TSHLEST--------KDHSKERLKQLDTVLKKMMDAPPSATVIFGGDTNLRDQEVAKIGGLPNTILDVWEFLGKPEHCRYTWDTKLNNNLRACYTSRLRFDRILYRASMEGSQVIPQFLNLVGTEKLDCGRF------------------PSDHWGLL 364          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_MOUSE (Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus GN=Tdp2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.952e-17
Identity = 85/302 (28.15%), Postives = 132/302 (43.71%), Query Frame = -1
Query:  200 SNKAVQIEGSNSGSIKASLKILSYNVWFREDLE---VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPN---VIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1057
            +N    +E S SG+       +S+  W  + L+   + +R + +   + L+SPD++  QEV P          + K    S +  T +   YF  I L K  VK   +E  PF N+ M R L    V L G E  L+  T+HLES         + +S ER+ Q K  +  ++  P+   VIF GD N  D    K  G   L D   DAW  L +P    +T+DTK+N  L      + R DR   +     +   +++++G+E +    +                  PSDH+GLL T++
Sbjct:  103 ANDTTILEASPSGTPLEDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY------CAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLM--TSHLES--------TREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGG---LPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRF------------------PSDHWGLLCTLN 367          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_BOVIN (Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=TDP2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.587e-15
Identity = 79/280 (28.21%), Postives = 125/280 (44.64%), Query Frame = -1
Query:  203 ILSYNVWFREDLEVH---KRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNW-DDKLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDR--FLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTI 997
            + S+  W  + L+++   +R + +   + L+SPD+I  QEV P  Y       + K    S    T     YF  I L K  VK   +E  PF N+ M R L    V +SG E  L + T+HLES         + ++KER+ Q K+ +  ++  P    VIF GD N  D ++     L +  +D W  L +P    +T+DT+ N  L      + R DR  F     G  +   +++++G+E +    +                  PSDH+GLL T+
Sbjct:  115 VFSFITWNIDGLDMNNLLERARGVCSYLTLYSPDVIFLQEVIPPYY------AYLKKKASSYKIITGREEGYFTAIMLKKSRVKFKSQEIIPFPNTQMMRNLLCVHVSVSGNE--LCLMTSHLEST--------RGHAKERMNQFKMVLEKMQEAPGSATVIFAGDTNLRDQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAANCKLRFDRIFFRAAAEGGHIIPQSLDLLGLEKLDCGRF------------------PSDHWGLLCTL 360          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_RAT (Tyrosyl-DNA phosphodiesterase 2 OS=Rattus norvegicus GN=Tdp2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.483e-15
Identity = 86/302 (28.48%), Postives = 131/302 (43.38%), Query Frame = -1
Query:  200 SNKAVQIEGSNSGSIKASLKILSYNVWFREDLE---VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILE---NKPNVIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1057
            +N    +E S SG+       +S+  W  + L+   + +R + +   + L+SPD++  QEV P      R     K  R + +  T +   YF  I L K  VK   +E  PF N+ M R L    V L G E  L+  T+HLES         + +S ER+ Q K     ++   +   VIF GD N  D    K  G   L D   DAW  L +P    +T+DTK+N  L      + R DR   +     +   ++++IG+E +    +                  PSDH+GLL T++
Sbjct:   99 ANDTTILETSPSGTPLEDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPSYCAYLR-----KRAR-TYNIITGNEEGYFTAILLKKGRVKFKGQEIIPFPNTKMMRNLLCVNVSLGGNEFCLM--TSHLEST--------RKHSAERINQLKTVFQKMQEATDSTTVIFAGDTNLRDQEVIKCGG---LPDNVFDAWEFLGKPKHCRYTWDTKANDNLRIPAACKHRFDRIFFRAEEGHLIPQSLDLIGLERLDCGRF------------------PSDHWGLLCTLN 363          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_CHICK (Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus GN=TDP2 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.027e-14
Identity = 86/309 (27.83%), Postives = 135/309 (43.69%), Query Frame = -1
Query:  212 CIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFP-VKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDR--FLCKLNGFKVCA--VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1093
            CI+L       ASN +     S      +S  ++++N+   +   + +R + +   + L+SPD++  QEV P    I +      GY         ++  YF   L K P VK  ++E   F  + M R L +  V +SG E  L + T+HLES         + +SKER++Q ++ +N ++ +     VIFGGD N  D    KL G   L     D W  L +P    +T+DT SN  L      + R DR  F     G  +    +++IG+E +    +                  PSDH+GLL
Sbjct:   93 CIDLTA--DDTASNTSSSGADSKQQDDDSSFSLITWNIDGLDLGNLQERARGVCSYLALYSPDVVFLQEVIPPYLCILQ--RRAGGYTII----PGNVDGYFTAMLLKKPRVKVLKQEIIRFPTTSMMRNLLVVHVNISGNE--LCLMTSHLEST--------RDHSKERMKQLQIVLNKMQEESQSTTVIFGGDTNLRDSEVAKLGG---LPKNITDIWEFLGKPQHCRYTWDTSSNTNLRIESKCKLRFDRLYFRPAAEGGHIIPRNMDLIGLEKLDCGRF------------------PSDHWGLL 362          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_HUMAN (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.489e-13
Identity = 74/271 (27.31%), Postives = 115/271 (42.44%), Query Frame = -1
Query:  203 VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIF--RGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDK-LDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCA---------VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTI 958
            + +R + +   + L+SPD+I  QEV P  Y     R SN+           T     YF  I L K  VK   +E  PF ++ M R L    V +SG E  L + T+HLES         + ++ ER+ Q K+ +  ++  P    VIF GD N  D+ +     L +  +D W  L +P    +T+DT+ N  L      + R DR       F+  A         ++++G+E +    +                  PSDH+GLL  +
Sbjct:  129 LSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNY--------EIITGHEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHVNVSGNE--LCLMTSHLES--------TRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIF-----FRAAAEEGHIIPRSLDLLGLEKLDCGRF------------------PSDHWGLLCNL 358          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_DANRE (Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio GN=tdp2 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.187e-12
Identity = 89/325 (27.38%), Postives = 139/325 (42.77%), Query Frame = -1
Query:  197 NEDCIELGGFR---GIKASNKAVQIE-GSNSGSIKAS-LKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSN----WWKGYRCSISDDTASLRAYFC-IQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPN---VIFGGDMNW-DDKLDGQFPLTDGWIDAWNELRPAEDG-WTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC------AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISS 1102
            N DCI+L        I  ++K  Q E G+    ++ S L I+S+NV   + L +  R + +   + L++PD++  QE+ P      +       +++G     SDD      YF  I L K  VK    E   F  + M R L + +V  SG +  L + T+HLES         +  S+ER +Q +V +  ++  P    VIF GD N  D ++     L  G  D W +L   E   +T+DTK+N   +     R R DR    L   K         + +IG+E +    YT                  SDH+G+  T ++
Sbjct:   85 NADCIDLTAEEPTCSITVNSKENQAENGTAKSEVEDSKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFFEG-----SDD-----GYFTGIMLRKSRVKFLESEIICFPTTQMMRNLLIAQVTFSGQK--LYLMTSHLESC--------KNQSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIF--LRSAKTAPPVTPDHMALIGMEKLDCGRYT------------------SDHWGIYCTFNT 369          
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_CAEBR (5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis briggsae GN=CBG18823 PE=3 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 7.989e-9
Identity = 67/238 (28.15%), Postives = 107/238 (44.96%), Query Frame = -1
Query:  368 NKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPM-IYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSK-FPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAIN----ILENKPN--VIFGGDMNWDDKLDGQFPLTDGWIDAWNELR-PAEDGWTYDTKSNQMLSANRTLRKRLDR 1054
            N+AV    S++G     L ++S+N+   +   +  RMKA+  +++  +PDI+  QEV    +  I +  + +K Y  +        + Y  I +SK F V+      F NS M R L + E  + G +  LV   THLES         + +  +R+ Q    ++    I+ N P   + FGGD+N  D+     P  DG +DAW       +  WT+DT  N         + R DR
Sbjct:   80 NEAVMGPSSSAG---FELSLMSWNIDGLDGRSLATRMKAVATIVKKVNPDILFLQEVVDRDLEPIDKLQSLYKIYYSN-----KGCQYYTAILVSKMFEVEKHDVVHFQNSGMYRTLQIVEGSIGGMKVFLV--NTHLESM--------RDHRAQRMAQFSFCMDRCAEIIANNPGCFLFFGGDLNLRDEEISSIP--DGVLDAWVSAGCDTKTKWTWDTYKNDNKQGFNGAKMRFDR 297          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I3S456_LOTJA1.903e-13469.20Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
A0A068U886_COFCA2.319e-13465.82Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
M0SUA5_MUSAM2.134e-13369.89Uncharacterized protein OS=Musa acuminata subsp. m... [more]
F6H7K7_VITVI8.535e-13373.12Putative uncharacterized protein OS=Vitis vinifera... [more]
M1BRD4_SOLTU4.856e-13164.09Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TYDP2_XENTR1.113e-1827.74Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropica... [more]
TYDP2_XENLA1.487e-1727.53Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus laevis ... [more]
TYDP2_MOUSE1.952e-1728.15Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus GN... [more]
TYDP2_BOVIN1.587e-1528.21Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=T... [more]
TYDP2_RAT5.483e-1528.48Tyrosyl-DNA phosphodiesterase 2 OS=Rattus norvegic... [more]
TYDP2_CHICK7.027e-1427.83Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus G... [more]
TYDP2_HUMAN5.489e-1327.31Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
TYDP2_DANRE1.187e-1227.38Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio GN=... [more]
TYDP2_CAEBR7.989e-928.155'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005135Endonuclease/exonuclease/phosphataseGENE3D3.60.10.10coord: 33..302
e-value: 1.4E-14
score: 53.7
IPR005135Endonuclease/exonuclease/phosphatasePFAMPF03372Exo_endo_phoscoord: 39..295
e-value: 2.8E-19
score: 69.8
IPR005135Endonuclease/exonuclease/phosphataseSUPERFAMILY56219DNase I-likecoord: 35..302
NoneNo IPR availablePANTHERPTHR15822:SF4TYROSYL-DNA PHOSPHODIESTERASE 2coord: 18..305
NoneNo IPR availablePANTHERPTHR15822TRAF AND TNF RECEPTOR-ASSOCIATED PROTEINcoord: 18..305

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001670 ID=g.arboreum_cottongen_reftransV1_0001670; Name=g.arboreum_cottongen_reftransV1_0001670; organism=Gossypium arboreum; type=contig; length=1129bp
GACAAAATGATCATATGATTTCCATACATGGAAGTTTTCATACAAAAAAA
GCTAAATGCTGCAAACCATTCGCATCATAGTCCGTTACTAGTCTATACAA
AATCGGCATACGAGTATGACCGCAAATACGGATGAAAATAGACGAACAAT
TCGAGCTTAAACCGAACCATATATGATGCCAGACCGGGCATTACTGACTT
GAGATTGTTAAAAGCAAGCCATAATGATCACTTGGCAAAACAGGAAGTTC
CAATAACTTCTTCTCTTTCCTCACATTCTTCTCCTTGGTATATGATAAAC
CCGGTATTGGCTCTACCCCGATCATCTCGACTGCACAGACTTTAAAACCA
TTCAGCTTGCATAGAAAGCGATCTAGTCGTTTTCGTAATGTACGATTTGC
CGATAACATCTGGTTTGATTTGGTATCATACGTCCATCCATCTTCAGCAG
GCCTTAACTCGTTCCAAGCATCAATCCATCCATCAGTTAAAGGAAACTGA
CCATCTAATTTGTCATCCCAATTCATATCACCACCAAAAATAACATTCGG
CTTATTCTCGAGAATATTGATCGCTACTTTCGCTTGTTCTACACGTTCCT
TACTATACATTTGATCCCATTTCGGCGGAGCAGGACACGGACTCTCGAGA
TGGGTAGTAGCAACAACAAGCGTTGTTTCACCCCCAGAAAGTTCAACCTC
AGTCATGCAAAGTTCTCGCCCCATTATCGAATTATCAAAAGGTTCACGAC
GAAAGGATTTCACAGGGAATTTGCTTAACTGTATACAAAAGTAAGCTCTC
AAACTCGCCGTGTCGTCTGAGATAGAGCACCGGTACCCTTTCCACCAGTT
AGACCCACGAAAAATGTCATAAATCATCGGAGTAACCTCTTGAAAACAAA
TGATATCAGGGGAATGAAGTTGAATAAGGTCACCAATAGCTTTCATCCTC
TTGTGAACCTCTAAATCTTCCCTAAACCAAACATTGTAGCTCAATATCTT
CAATGAAGCTTTAATGGATCCTGAATTACTACCCTCTATTTGAACAGCTT
TATTGGAGGCTTTAATGCCACGAAAACCACCCAATTCGATACAATCTTCA
TTACCCAGATTTGGTTCCCTGATCTTCCT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase