g.arboreum_cottongen_reftransV1_0010582, g.arboreum_cottongen_reftransV1_0010582 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010582
Unique Nameg.arboreum_cottongen_reftransV1_0010582
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1363
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeg.arboreum_cottongen_reftransV1_0010582:1..1363 .
Chr9:30545207..30546569 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: R0GUZ4_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004238mg PE=4 SV=1)

HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0
Identity = 281/424 (66.27%), Postives = 349/424 (82.31%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLIN-----GAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R+IFDQ  +KDLV W+ MIS YAE+D PQEALR+F E++  GI+PD +TM SVISACANLG L  AKW+H Y   +G    L INNALI+MYAKCG L  ARNVFE M +RNV+SW+ MINA+++HG+A++AL  F +MK+    PN +TFVGVLY CSH+GLVE+G+KIFASM +E+NITP  EHYGCMVDL  RAN L+EA+EI+E+MP APNVVIWGSLMSAC++HGE +LGE  AK +L+LEPDHDGALVL+SNIYA+E++W +V ++R +MKE+ + KE+G SRI+LN + HEFL+ D+ HKQ+ +IY KL+EVVS+LKL GY P++G VLVD+EEEEK ++VLWHSEKLALC+GL+N     G+  + IRIVKNLRVCEDCHTF KLVSKVY REIIVRDRTRFHHY+DG+CSCRDYW
Sbjct:  301 RVIFDQTEKKDLVCWTTMISAYAENDHPQEALRVFDEMRYSGIKPDLITMFSVISACANLGTLGNAKWVHHYTHISGLESVLPINNALINMYAKCGGLNEARNVFENMPTRNVVSWSSMINAYSMHGEASDALISFARMKQENAVPNAITFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPTLEHYGCMVDLFCRANRLQEALEIIESMPMAPNVVIWGSLMSACRVHGELKLGESAAKHILKLEPDHDGALVLMSNIYAREQRWDDVRNIRCVMKEKNVFKEKGLSRIDLNGKSHEFLIGDKRHKQSDKIYAKLDEVVSKLKLAGYVPHSGSVLVDVEEEEKNDLVLWHSEKLALCFGLMNKEEEKGSCGTVIRIVKNLRVCEDCHTFFKLVSKVYEREIIVRDRTRFHHYKDGLCSCRDYW 724          

HSP 2 Score: 123.635 bits (309), Expect = 7.774e-27
Identity = 70/265 (26.42%), Postives = 132/265 (49.81%), Query Frame = -2
Query:  667 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRN-------------------------------VISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKI--FASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGET 1362
            R +FD+M ++D+V+W+ MI  Y       EA +LF+E++   + PD++ + +++SAC   G +   + I+ +  +N       +  AL+ MYA  G ++ AR  FEKM+ RN                               ++ WT MI+A+A +     ALR F +M+ + ++P+ +T   V+ AC++ G + + + +  +  +    ++ P +     ++++  +   L EA  + E MP   NVV W S+++A  +HGE 
Sbjct:  169 RNVFDEMSQRDVVTWNTMIDRYCRCGLLDEAFKLFEEMKFSNVMPDEMILCNIVSACGRTGNMSYNRAIYDFLIENDVSMDTHLLTALVTMYAGSGCMDMAREFFEKMSVRNLFVSTAMVSGYSKAGRLNEARVIFDQTEKKDLVCWTTMISAYAENDHPQEALRVFDEMRYSGIKPDLITMFSVISACANLGTLGNAKWVHHYTHISGLESVLPIN---NALINMYAKCGGLNEARNVFENMP-TRNVVSWSSMINAYSMHGEA 429          

HSP 3 Score: 92.4337 bits (228), Expect = 1.020e-16
Identity = 55/231 (23.81%), Postives = 109/231 (47.19%), Query Frame = -2
Query:  634 VSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVL 1326
            V ++  +   + S++P+  +  ++ ++  G R DQ +   ++ A   +    +   IH  A K        +   L+DMYA CG +E ARNVF++M+ R+V++W  MI+ +   G  + A + F++MK + V P+ +    ++ AC   G +   R I+  +I E++++        +V +   +  +  A E  E M       +    +S   + G ++ G     RV+
Sbjct:   80 VVFNPFLRDLSRSNEPRATILFYQRIRHAGGRLDQFSFPPILKAACKVSAFFEGMEIHGVAFKMATLSDPFVQTGLMDMYASCGRIECARNVFDEMSQRDVVTWNTMIDRYCRCGLLDEAFKLFEEMKFSNVMPDEMILCNIVSACGRTGNMSYNRAIYDFLI-ENDVSMDTHLLTALVTMYAGSGCMDMAREFFEKMS------VRNLFVSTAMVSGYSKAGRLNEARVI 303          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: S8CJR2_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_09864 PE=4 SV=1)

HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 274/420 (65.24%), Postives = 337/420 (80.24%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHY-RDGVCSCRDYW 1362
            RL+FD+MV+KDLV WSAMIS YAESD PQEAL++F ++Q  GI+PDQVTMLSVISACA+LG L +AK IH    +  FG +L INNALIDMYAKCGSL  A  VF +M  +NVISW+ MINAFA+HGDA NAL++F  MK   VEPN +TFVGVLYACSHAGLV +G+K F SM+ E+ ITPK EHYGC+VDL GRAN +R+A++IVETMP APNVVIWGSLM AC IHGE +LG + AK+VLEL+P HDGA + LSN YAKER W++VG LR LM++RGI KERG S IE+ + +HEFL  DR H++A EIY KL +VV ++K  GY+PNTG VL+D++E+EK  VV+ HSEKLALCYGLI   ++ CIRI+KNLR+CEDCH F+KL S V++REI++RDR+RFH +  DG CSC D+W
Sbjct:  309 RLVFDEMVDKDLVCWSAMISCYAESDHPQEALKIFDQMQQNGIKPDQVTMLSVISACAHLGALHRAKQIHETVVRKEFGRALPINNALIDMYAKCGSLHDASEVFIRMHHKNVISWSSMINAFAVHGDAANALKHFTLMKLENVEPNWITFVGVLYACSHAGLVVEGQKAFESMVEEYRITPKLEHYGCLVDLYGRANHIRKALQIVETMPMAPNVVIWGSLMGACWIHGEFDLGVYAAKQVLELDPSHDGAHIFLSNAYAKERWWESVGGLRGLMRQRGIVKERGCSAIEVGDRIHEFLTGDRRHERADEIYAKLYQVVEKVKQVGYSPNTGGVLIDVDEDEKEAVVIGHSEKLALCYGLIEKGEEGCIRIIKNLRICEDCHKFVKLASGVFKREIVIRDRSRFHRFGGDGSCSCGDFW 728          

HSP 2 Score: 127.102 bits (318), Expect = 4.469e-28
Identity = 76/283 (26.86%), Postives = 142/283 (50.18%), Query Frame = -2
Query:  619 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGD-------------------------------ANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEH--NITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGET--ELGEFTAKRVLELEPD 1362
            R +FD M  KD+V+W+ MI GY +S    +AL L +E++  G+ PD+    +++S CA    LD  K +H    ++G     ++  AL++MYA  G+++ A+ +++KM  +NV++ T MI   + HGD                                  AL+ F +M++  ++P+ VT + V+ AC+H G +   ++I  +++ +      P +     ++D+  +   L +A E+   M    NV+ W S+++A  +HG+    L  FT  ++  +EP+
Sbjct:  178 RFLFDAMSHKDIVAWNIMIDGYCQSQLFDDALALLEEMKS-GVEPDERIFTTILSGCARFKKLDIGKSVHELISRSGTVLDSQLQTALVNMYANSGAMDLAQTLYDKMKIKNVVASTVMITGHSRHGDIGAARLVFDEMVDKDLVCWSAMISCYAESDHPQEALKIFDQMQQNGIKPDQVTMLSVISACAHLGALHRAKQIHETVVRKEFGRALPINN---ALIDMYAKCGSLHDASEVFIRM-HHKNVISWSSMINAFAVHGDAANALKHFTLMKLENVEPN 455          

HSP 3 Score: 70.4774 bits (171), Expect = 1.190e-9
Identity = 59/271 (21.77%), Postives = 119/271 (43.91%), Query Frame = -2
Query:  508 MISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNI---YAKERKWQNVGDLRQLMKERGISKER 1311
            +I+  + S   + A+  F+ +       D+ +   +I   +    LD+ +  H  A K G+     +  AL+ MY  CG +  AR +F+ M+ +++++W  MI+ +      ++AL   ++MK   VEP+   F  +L  C+    ++ G+ +   +I+        +    +V++   +  +  A  + + M    NVV      S   I G +  G+  A R++  +   D  LV  S +   YA+    Q    +   M++ GI  ++
Sbjct:   94 IINHLSRSSDNRNAILFFQAMLRKDFPIDRFSFPPMIKTASKARALDEGRMFHALAAKLGYDSDPFVETALMGMYGACGLISDARFLFDAMSHKDIVAWNIMIDGYCQSQLFDDALALLEEMKSG-VEPDERIFTTILSGCARFKKLDIGKSVH-ELISRSGTVLDSQLQTALVNMYANSGAMDLAQTLYDKMKI-KNVV-----ASTVMITGHSRHGDIGAARLV-FDEMVDKDLVCWSAMISCYAESDHPQEALKIFDQMQQNGIKPDQ 355          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: M0UAN8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 1.557e-178
Identity = 243/419 (58.00%), Postives = 305/419 (72.79%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R IFDQM +KDLV WSAMISGYAESDQP EAL+LF E+ +LG++PDQ+TMLSVISACAN+G  D+AKW+H++ DKNGF   L I NALIDMY+KCGSL  AR +F++   ++VI+WT MI  FA+HG+  +AL  F  M    V+PNGVTF+ +LYACSHAGLV++GR+IF SMI ++ + PKHEHYGCMVDLLGRA LL+EA+E +E+MPFAPNVV+WGSL+ AC+IHG+ +LGE  A+R+LEL+P+HDGA VLLSNIYAK  +W++V ++R LMK +G                         H ++ EIY K                       L+EEEKRE +L HSEKLAL  GLI+  K S I I KNLRVC+DCHTF+KL SKV+ REI++RDRTRFHHY+DGVCSC D+W
Sbjct:   66 RFIFDQMTDKDLVCWSAMISGYAESDQPNEALKLFNEMHLLGVKPDQITMLSVISACANMGARDQAKWVHIFVDKNGFHQILSIRNALIDMYSKCGSLVDARTIFDETAFKDVITWTSMITGFAMHGNGRSALAVFDHMISEGVKPNGVTFISLLYACSHAGLVDEGRRIFESMIQDYRLEPKHEHYGCMVDLLGRARLLQEALEFIESMPFAPNVVVWGSLLGACRIHGDVKLGELVARRLLELDPNHDGAYVLLSNIYAKASRWEDVREVRNLMKNKGC------------------------HPRSSEIYGK-----------------------LDEEEKREAILLHSEKLALSLGLIDSKKGSSIHIAKNLRVCDDCHTFMKLASKVFEREIVLRDRTRFHHYKDGVCSCGDFW 437          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: M0TTX8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 517.309 bits (1331), Expect = 9.596e-178
Identity = 242/419 (57.76%), Postives = 304/419 (72.55%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R IFDQM +KDLV WSAMISGYAESDQP EAL+LF E+ +LG++PDQ+TMLSVISACAN+G  D+AKW+H++ DKNGF   L I NALIDMY+KCGSL  AR +F++   ++VI+WT MI  FA+HG+  +AL  F  M    V+PNGVTF+ +LYACSHAGLV++GR+IF SMI ++ + PKHEHYGCMVDLLGRA LL+EA+E +E+MPFAPNVV+WGSL+ AC+IHG+ +LGE  A+R+LEL+P+HDGA VLLSNIYAK  +W++V ++R LMK +G                         H ++ EIY K                       L+EEEKRE +L HSEKLAL  GLI+  K S I I KN+RVC DCHTF+KL SKV+ REI++RDRTRFHHY+DGVCSC D+W
Sbjct:   66 RFIFDQMTDKDLVCWSAMISGYAESDQPNEALKLFNEMHLLGVKPDQITMLSVISACANMGARDQAKWVHIFVDKNGFHQILSIRNALIDMYSKCGSLVDARTIFDETAFKDVITWTSMITGFAMHGNGRSALAVFDHMISEGVKPNGVTFISLLYACSHAGLVDEGRRIFESMIQDYRLEPKHEHYGCMVDLLGRARLLQEALEFIESMPFAPNVVVWGSLLGACRIHGDVKLGELVARRLLELDPNHDGAYVLLSNIYAKASRWEDVREVRNLMKNKGC------------------------HPRSNEIYGK-----------------------LDEEEKREAILLHSEKLALSLGLIDSKKGSSIHIAKNIRVCNDCHTFMKLASKVFEREIVLRDRTRFHHYKDGVCSCGDFW 437          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: A0A078I121_BRANA (BnaC01g22730D protein OS=Brassica napus GN=BnaC01g22730D PE=4 SV=1)

HSP 1 Score: 481.871 bits (1239), Expect = 4.774e-161
Identity = 222/339 (65.49%), Postives = 276/339 (81.42%), Query Frame = -2
Query:  346 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDL 1362
            R IFD+M +KDLV W+ MIS YAESD P+EALR+F E++  G  PD++ M SV+SACA+LGVL+KAKW+H Y  +NGF  SL +NNALI+MYAKCGSL+ AR VFE+M ++NV+SW+ MINAF++HG+AN+AL  F +MK+  VEPN VTFVGVLY CSH+GLVE+G KI ASM +E+NITPK EHYGCMVDL GRAN L EA+E++E+MP APNV IWGSLMSAC++HGE ELGEF AKRVLELEPDHDGALVL+SNIYA+E +W +V  +R+ M+E+ + KE+G SRI+LN E HEFL+ D+ HKQ+ EI  KL EVVS LKL G  P+ G VLVD+
Sbjct:  295 RDIFDRMEKKDLVCWTTMISAYAESDHPEEALRVFDEMRRYGTEPDEIAMGSVVSACASLGVLEKAKWVHEYTHRNGFESSLTVNNALINMYAKCGSLDAARGVFEEMPTKNVVSWSSMINAFSMHGEANDALALFARMKQENVEPNDVTFVGVLYGCSHSGLVEEGNKILASMTDEYNITPKLEHYGCMVDLFGRANRLPEALEVIESMPMAPNVFIWGSLMSACRVHGELELGEFAAKRVLELEPDHDGALVLMSNIYAREERWDDVRKVRRGMEEKNVFKEKGVSRIDLNGESHEFLIGDKRHKQSDEISAKLKEVVSELKLAGCIPDYGSVLVDV 633          

HSP 2 Score: 115.546 bits (288), Expect = 2.350e-24
Identity = 75/289 (25.95%), Postives = 137/289 (47.40%), Query Frame = -2
Query:  619 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNG--------------FGG-----------------SLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDG--------RKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE--LGEFTAKRVLELEPD 1362
            R +FD+M ++D+V+W+ MI  Y      +EA +LF+E++   + PD++ + +++SACA  G       I+ +  +N               + G                 SL ++ A++  +AK   L+ AR++F++M  ++++ WT MI+A+A       ALR F +M+    EP+ +    V+ AC+  G++E          R  F S +  +N          ++++  +   L  A  + E MP   NVV W S+++A  +HGE    L  F   +   +EP+
Sbjct:  163 RKVFDEMPQRDVVTWNTMIERYCRCGFLEEAFKLFEEMKCSNVMPDEMILCNIVSACARSGNTRYNSPIYEFLKENDVRMDAHLLTALVTMYAGAGCMDIAREFYMKMSVRSLFVSTAMVSGFAKARRLDDARDIFDRMEKKDLVCWTTMISAYAESDHPEEALRVFDEMRRYGTEPDEIAMGSVVSACASLGVLEKAKWVHEYTHRNGFESSLTVNN---------ALINMYAKCGSLDAARGVFEEMP-TKNVVSWSSMINAFSMHGEANDALALFARMKQENVEPN 441          

HSP 3 Score: 85.5001 bits (210), Expect = 1.567e-14
Identity = 65/258 (25.19%), Postives = 113/258 (43.80%), Query Frame = -2
Query:  619 AESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASM------INEHNITPKHEHY---GC---------------------MVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSAC--QIHGETELGEFTAKRVLELEPD 1296
            + SD+P+  +  ++ ++  G R DQ +   ++ A A +  L +   +H  A K        +  A++DMYA CG +  AR VF++M  R+V++W  MI  +   G    A + F++MK + V P+ +    ++ AC+ +G       I+  +      ++ H +T     Y   GC                     MV    +A  L +A +I + M    ++V W +++SA     H E  L  F   R    EPD
Sbjct:   84 SRSDEPRATILFYQRIRHAGGRLDQFSFTPILKAAAKVSALFEGTELHGLALKLATLSDPFVKTAVMDMYACCGKIVEARKVFDEMPQRDVVTWNTMIERYCRCGFLEEAFKLFEEMKCSNVMPDEMILCNIVSACARSGNTRYNSPIYEFLKENDVRMDAHLLTALVTMYAGAGCMDIAREFYMKMSVRSLFVSTAMVSGFAKARRLDDARDIFDRME-KKDLVCWTTMISAYAESDHPEEALRVFDEMRRYGTEPD 340          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: OGR1_ORYSJ (Pentatricopeptide repeat-containing protein OGR1, mitochondrial OS=Oryza sativa subsp. japonica GN=OGR1 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 3.151e-126
Identity = 184/427 (43.09%), Postives = 278/427 (65.11%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKEL----QILGIR--PDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFE--KMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R +FD+M  +D+ +W+++++G A+  +P  AL LF  L    Q L  R  P++VT+++ +SACA +G+L    ++H +A + G   ++R+ N+LIDMY+KCGSL RA +VF   K   + ++S+   I A ++HG   +ALR F +M   R+EP+GVT++ VL  C+H+GLV+DG ++F SM     + P  +HYG +VDLLGRA  L EA + V +MPF  ++V+W +L+ A ++HG  EL E  A ++ EL  + DG  VLLSN+YA + +W +VG +R  M+   + K  G+S  E++  +H+F+  D+ H +  EIY  L ++VSR+   GY P T  VL D+ EEEK+  + +HSEKLA+ +GLI       +R++KNLR+C DCH   KL+SK Y R I++RDR RFH + DG CSCRDYW
Sbjct:  166 RKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 587          

HSP 2 Score: 85.8853 bits (211), Expect = 1.670e-16
Identity = 55/197 (27.92%), Postives = 95/197 (48.22%), Query Frame = -2
Query:  673 RPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMK------EARVEPNGVTFVGVLYACSHAGLVEDGRKI--FASMIN-EHNITPKHEHYGCMVDLLGRANLLREAVEIVETM-PFAPNVVIWGSLMSACQIHG 1233
            RPD +++   + A A          +H    + G    +R+   L+D YAKCG L  AR VF++MT R+V +W  ++   A   + N AL  F ++        +R EPN VT V  L AC+  GL++DG  +  FA     + N+   +     ++D+  +   L  A+++  ++ P    +V + + + A  +HG
Sbjct:  108 RPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNS----LIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHG 300          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 4.016e-125
Identity = 180/419 (42.96%), Postives = 272/419 (64.92%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R +FD MVEKD+V+WS MI GYA +  P+E + LF ++    ++PDQ +++  +S+CA+LG LD  +W     D++ F  +L + NALIDMYAKCG++ R   VF++M  ++++     I+  A +G    +   F + ++  + P+G TF+G+L  C HAGL++DG + F ++   + +    EHYGCMVDL GRA +L +A  ++  MP  PN ++WG+L+S C++  +T+L E   K ++ LEP + G  V LSNIY+   +W    ++R +M ++G+ K  GYS IEL  +VHEFL  D++H  + +IY KL ++ + ++L G+ P T  V  D+EEEEK  V+ +HSEKLA+  GLI+      IR+VKNLRVC DCH  +KL+SK+ RREI+VRD  RFH + +G CSC DYW
Sbjct:  267 RSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685          

HSP 2 Score: 137.887 bits (346), Expect = 1.187e-33
Identity = 70/256 (27.34%), Postives = 140/256 (54.69%), Query Frame = -2
Query:  595 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETEL--GEFTAKRVLELEPDHDGALVLL 1356
            +FD++ ++ +V+W+A+ SGY  S + +EA+ LFK++  +G++PD   ++ V+SAC ++G LD  +WI  Y ++     +  +   L+++YAKCG +E+AR+VF+ M  +++++W+ MI  +A +      +  F +M +  ++P+  + VG L +C+  G ++ G +   S+I+ H           ++D+  +   +    E+ + M    ++VI  + +S    +G  +L    F     L + PD    L LL
Sbjct:  168 LFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLL 421          

HSP 3 Score: 82.4185 bits (202), Expect = 2.294e-15
Identity = 52/224 (23.21%), Postives = 102/224 (45.54%), Query Frame = -2
Query:  688 LIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSA 1359
            L+F      ++  ++++I+G+  +    E L LF  ++  G+     T   V+ AC           +H    K GF   +    +L+ +Y+  G L  A  +F+++  R+V++WT + + +   G    A+  F+KM E  V+P+    V VL AC H G ++ G  I   M  E  +         +V+L  +   + +A  + ++M    ++V W +++  
Sbjct:   66 LLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM-EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQG 287          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 7.353e-124
Identity = 197/434 (45.39%), Postives = 266/434 (61.29%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKN---GFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEAR--VEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGET-ELGEFTAKRVLELEPDHD-------GALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPN-TGCVLVDLEEEEKREVVL-WHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R +FD+M E+ LVSW++MI       +   AL+LF+E+Q     PD  TM SV+SACA LG L    W H +  +         + + N+LI+MY KCGSL  A  VF+ M  R++ SW  MI  FA HG A  A+ +F +M + R  V PN VTFVG+L AC+H G V  GR+ F  M+ ++ I P  EHYGC+VDL+ RA  + EA+++V +MP  P+ VIW SL+ AC   G + EL E  A+ ++  + D++       GA VLLS +YA   +W +VG +R+LM E GI KE G S IE+N   HEF   D +H Q  +IY++L  +  RL+  GY P+ +   LVD   +  +E  L  HSE+LA+ +GLIN    + IRI KNLRVC DCH   KL+SKV+  EIIVRDR RFHH++DG CSC DYW
Sbjct:  206 RKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638          

HSP 2 Score: 109.383 bits (272), Expect = 3.136e-24
Identity = 66/235 (28.09%), Postives = 123/235 (52.34%), Query Frame = -2
Query:  664 IFDQMVEKDLVSWSAMISGYA-ESDQPQEALRLFKELQILG-IRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHY--GCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE 1356
            +FD +       W+ +I   A +  + +EA  L++++   G   PD+ T   V+ ACA +    + K +H    K+GFGG + +NN LI +Y  CG L+ AR VF++M  R+++SW  MI+A    G+ ++AL+ F++M+ +  EP+G T   VL AC+  G +  G    A ++ + ++    +      ++++  +   LR A ++ + M    ++  W +++     HG  E
Sbjct:  105 VFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAE 337          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3)

HSP 1 Score: 381.333 bits (978), Expect = 1.072e-123
Identity = 181/415 (43.61%), Postives = 275/415 (66.27%), Query Frame = -2
Query:  106 DQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1350
            D  V K+LV+W+AMISGY E+ +P++ L+LF+ +   GIRP+   + S +  C+ L  L   + IH    K+     +    +LI MY KCG L  A  +FE M  ++V++W  MI+ +A HG+A+ AL  F++M + ++ P+ +TFV VL AC+HAGLV  G   F SM+ ++ + P+ +HY CMVDLLGRA  L EA++++ +MPF P+  ++G+L+ AC++H   EL EF A+++L+L   +    V L+NIYA + +W++V  +R+ MKE  + K  GYS IE+ N+VH F  +DR H +   I++KL E+  ++KL GY P     L ++EEE+K +++LWHSEKLA+ +G I   + S I++ KNLR+C DCH  +K +S++ +REIIVRD TRFHH++DG CSC DYW
Sbjct:  242 DMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656          

HSP 2 Score: 60.077 bits (144), Expect = 2.480e-8
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = -2
Query: 1030 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLD-KAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSR 1356
            +F+ M +KD+V+W+AMISGYA+     +AL LF+E+    IRPD +T ++V+ AC + G+++    +                   ++D+  + G LE A  +   M  R
Sbjct:  341 LFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450          

HSP 3 Score: 57.3806 bits (137), Expect = 1.562e-7
Identity = 62/256 (24.22%), Postives = 106/256 (41.41%), Query Frame = -2
Query:  691 IFDQMVEKDLVSWSAMISGYA-ESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQ----------------------------KMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLL-----REAVEIVETMPFAPNVVIWGSLMS 1356
            +F  M  K+ ++W++++ G + +  +  EA +LF E+      PD  +   ++S        +KA+    + D+  F  +   N  +I  YA+ G +E+AR +F  M  +N +SW  MI+ +   GD   A  +F+                              K+  V  N VT+  ++         EDG K+F +M+ E  I P     G    LLG + L      R+  +IV       +V    SL+S
Sbjct:   83 VFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP----EPDTFSYNIMLSCYVRNVNFEKAQ---SFFDRMPFKDAASWNT-MITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAML-EEGIRPNSS--GLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLIS 327          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 1.539e-123
Identity = 188/419 (44.87%), Postives = 269/419 (64.20%), Query Frame = -2
Query:  106 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMT-SRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLD-GYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1356
            IF +M  +D VSWS MI G A +    E+   F+ELQ  G+ P++V++  V+SAC+  G  +  K +H + +K G+   + +NNALIDMY++CG++  AR VFE M   R ++SWT MI   A+HG    A+R F +M    V P+G++F+ +L+ACSHAGL+E+G   F+ M   ++I P+ EHYGCMVDL GR+  L++A + +  MP  P  ++W +L+ AC  HG  EL E   +R+ EL+P++ G LVLLSN YA   KW++V  +R+ M  + I K   +S +E+   +++F   ++      E +EKL E++ RLK + GY P     L D+EEEEK + V  HSEKLAL + L   +K + IRIVKNLR+C DCH  +KL SKVY  EI+VRDR RFH ++DG CSCRDYW
Sbjct:  225 IFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643          

HSP 2 Score: 91.6633 bits (226), Expect = 1.903e-18
Identity = 63/232 (27.16%), Postives = 106/232 (45.69%), Query Frame = -2
Query:  655 EKDLVSWSAMISGYAESDQPQEALRLFKELQILG-IRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMP---FAPNVVIWGSLMSACQIHGETELGE 1338
            E D   ++ ++ GY+ESD+P  ++ +F E+   G + PD  +   VI A  N   L     +H  A K+G    L +   LI MY  CG +E AR VF++M   N+++W  +I A     D   A   F KM    +  N  ++  +L     AG +E  ++IF+ M +  +++     +  M+  +       E+      +     +PN V    ++SAC   G  E G+
Sbjct:   67 EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVS-----WSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGK 289          

HSP 3 Score: 84.7297 bits (208), Expect = 3.999e-16
Identity = 69/261 (26.44%), Postives = 112/261 (42.91%), Query Frame = -2
Query:  595 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE-----LGEFTAKRVLELEPDHDGALVLL 1362
            R +FD+M + +LV+W+A+I+              F+   + G R     ML          V +   W                 N ++  Y K G LE A+ +F +M  R+ +SW+ MI   A +G  N +  YF++++ A + PN V+  GVL ACS +G  E G KI    + +   +        ++D+  R   +  A  + E M     +V W S+++   +HG+ E       E TA  V    PD    + LL
Sbjct:  161 RKVFDEMHQPNLVAWNAVITA------------CFRGNDVAGAREIFDKML----------VRNHTSW-----------------NVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFG-KILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGV---TPDGISFISLL 378          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
R0GUZ4_9BRAS7.774e-2766.27Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
S8CJR2_9LAMI4.469e-2865.24Uncharacterized protein OS=Genlisea aurea GN=M569_... [more]
M0UAN8_MUSAM1.557e-17858.00Uncharacterized protein OS=Musa acuminata subsp. m... [more]
M0TTX8_MUSAM9.596e-17857.76Uncharacterized protein OS=Musa acuminata subsp. m... [more]
A0A078I121_BRANA4.774e-16165.49BnaC01g22730D protein OS=Brassica napus GN=BnaC01g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
OGR1_ORYSJ3.151e-12643.09Pentatricopeptide repeat-containing protein OGR1, ... [more]
PP219_ARATH4.016e-12542.96Putative pentatricopeptide repeat-containing prote... [more]
PPR85_ARATH7.353e-12445.39Pentatricopeptide repeat-containing protein At1g59... [more]
PP316_ARATH1.072e-12343.61Pentatricopeptide repeat-containing protein At4g16... [more]
PP122_ARATH1.539e-12344.87Pentatricopeptide repeat-containing protein At1g74... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 111..157
e-value: 1.6E-8
score: 34.5
coord: 9..57
e-value: 5.5E-10
score: 39.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 185..209
e-value: 0.22
score: 11.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 113..146
e-value: 6.0E-6
score: 24.1
coord: 85..112
e-value: 1.5E-4
score: 19.7
coord: 12..45
e-value: 6.8E-7
score: 27.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 214..244
score: 5.064
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 146..181
score: 8.002
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 248..282
score: 5.711
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 80..110
score: 8.714
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 6.884
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 10..44
score: 12.288
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 10.841
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 182..212
score: 5.974
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 11..142
e-value: 3.9E-9
score: 35.0
coord: 212..265
e-value: 3.9E-9
score: 35.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 90..135
coord: 229..265
coord: 295..317
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 285..407
e-value: 3.2E-36
score: 123.9
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..289
NoneNo IPR availablePANTHERPTHR24015:SF581SUBFAMILY NOT NAMEDcoord: 1..289

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010582 ID=g.arboreum_cottongen_reftransV1_0010582; Name=g.arboreum_cottongen_reftransV1_0010582; organism=Gossypium arboreum; type=contig; length=1363bp
TTGGAGAGCAGTCATGTTCCAAGCAACTCACTGTTGGTATTCCAATACAA
ATTTTACCATAATCCATAAACAATTCCGAGCAGAGAAAAGGCTCAAGAAA
CATCACCAATAGTCTCTGCAAGAACAAACTCCATCTCTGTAATGGTGGAA
CCTTGTCCTATCCCTGACAATAATTTCCCTCCTATACACCTTCGAAACTA
ACTTCAAAAAGGTATGGCAGTCCTCGCAAACTCGAAGATTCTTAACTATC
CGAATGCATGAATCTTTTGCCCCATTTATGAGTCCATAACAAAGTGCTAA
CTTCTCACTATGCCATAGAACCACCTCCCTTTTTTCTTCCTCTTCTAAGT
CAACAAGAACACAACCGGTATTTGGAGCATAGCCATCCAACTTCAATCGA
CTAACCACCTCATTCAATTTTTCATATATCTCATACGCTTGTTTGTGATT
CCTATCTGCCACTAAAAACTCATGCACCTCATTGTTCAATTCAATCCTAC
TATATCCCCTTTCCTTAGATATACCTCTTTCTTTCATTAATTGCCTCAAG
TCTCCAACATTTTGCCATTTTCTTTCTTTGGCATAAATATTTGATAGTAG
AACAAGAGCCCCATCATGATCTGGCTCAAGCTCGAGTACCCTTTTGGCAG
TGAATTCTCCTAATTCAGTCTCACCATGAATTTGACAAGCAGACATGAGG
GATCCCCAAATGACAACATTGGGTGCAAAAGGCATCGTCTCTACAATCTC
AACTGCTTCTCTCAAGAGATTAGCACGGCCAAGGAGGTCAACCATGCAAC
CATAATGTTCATGTTTAGGAGTGATATTGTGTTCATTAATCATGGATGCA
AAGATCTTTCGGCCATCCTCAACCAGCCCTGCATGGCTACAAGCATAAAG
CACGCCCACAAATGTAACTCCATTTGGCTCAACACGAGCCTCTTTCATTT
TCTGAAAGTATCTTAAAGCATTATTGGCATCCCCATGTATAGCAAATGCA
TTGATCATACCGGTCCAAGATATCACATTTCTGCTTGTCATTTTCTCAAA
AACATTTCTTGCTCTTTCCAAACTCCCACATTTGGCATACATGTCAATAA
GAGCATTATTAATACGTAAACTTCCTCCAAAACCGTTCTTATCAGCATAT
ACATGTATCCATTTAGCTTTATCTAGTACACCCAGATTTGCACAAGCTGA
TATAACACTCAGCATGGTCACCTGATCAGGTCTTATTCCTAGTATTTGCA
GTTCCTTAAACAATCTAAGAGCCTCTTGAGGTTGATCACTCTCAGCATAA
CCAGATATCATTGCACTCCAAGACACCAAGTCCTTCTCTACCATTTGGTC
AAAAATCAATCGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
IPR032867DYW_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding