g.arboreum_cottongen_reftransV1_0001303, g.arboreum_cottongen_reftransV1_0001303 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001303
Unique Nameg.arboreum_cottongen_reftransV1_0001303
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length527
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0001303:1..527 .
Chr5:9702481..9703007 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: F6HIM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02740 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 8.882e-55
Identity = 112/176 (63.64%), Postives = 139/176 (78.98%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAFS  +ER+D N  SR++QIKP  VRGVKG+MLPVVRINACV        S P  K R K+R+ SRS+R++S+T+DVK+SSAES S SK+V++   +GSWK +  INTPKD +CT ++LQLHLG+WYYLDGAGHE+GPSSFSELQ LVDQG I K+SS FRK D++WVP+TS
Sbjct:  835 LPIWAFSWPDERSDSNSASRASQIKP-VVRGVKGSMLPVVRINACV--------SEPPAKVRGKDRYSSRSARAYSSTTDVKRSSAESASHSKSVSENDSQGSWKCITSINTPKDRLCTAEDLQLHLGDWYYLDGAGHEQGPSSFSELQALVDQGSIQKHSSVFRKNDKIWVPITS 1001          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A059DGD7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01739 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 9.069e-55
Identity = 112/175 (64.00%), Postives = 141/175 (80.57%), Query Frame = -1
Query:    6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527
            LPPWAF+  +ER++ ND++   Q+KP+ +RGVKGTML VVRINACVV+DQGSFVS PR K R KERH SRS+RSHS++SD K+SS E+DS S+ V++   +G  K +  INTPKD VCTV +LQLHLG+WYY DGAG E GPSS+SELQ LVD+G I KY+S FRK+D++WVP+T
Sbjct:  929 LPPWAFNWPDERSE-NDLASRLQVKPAMMRGVKGTMLSVVRINACVVRDQGSFVSEPRMKARTKERHSSRSARSHSSSSDAKRSSVETDSRSRFVDEHSSRGLRKSIVTINTPKDRVCTVHDLQLHLGDWYYFDGAGQEHGPSSYSELQELVDRGTIQKYTSVFRKFDKLWVPLT 1102          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A059DFY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01739 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 9.164e-55
Identity = 112/175 (64.00%), Postives = 141/175 (80.57%), Query Frame = -1
Query:    6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527
            LPPWAF+  +ER++ ND++   Q+KP+ +RGVKGTML VVRINACVV+DQGSFVS PR K R KERH SRS+RSHS++SD K+SS E+DS S+ V++   +G  K +  INTPKD VCTV +LQLHLG+WYY DGAG E GPSS+SELQ LVD+G I KY+S FRK+D++WVP+T
Sbjct:  929 LPPWAFNWPDERSE-NDLASRLQVKPAMMRGVKGTMLSVVRINACVVRDQGSFVSEPRMKARTKERHSSRSARSHSSSSDAKRSSVETDSRSRFVDEHSSRGLRKSIVTINTPKDRVCTVHDLQLHLGDWYYFDGAGQEHGPSSYSELQELVDRGTIQKYTSVFRKFDKLWVPLT 1102          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: I1M406_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 4.229e-54
Identity = 115/176 (65.34%), Postives = 139/176 (78.98%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAP-INTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAF  A+ER+DC+  S+S Q KP++VRGVKG +L VVRINACVV+DQGS VS  R KTRVKERH SR +R  S+ SD K+SS E D  SKAV+DQ    S+++   INTPKDH CT+ ELQLHLG+WYYLDG+G ERGPSSFSELQ+ VDQG+I K+SS FRK D++WVP+TS
Sbjct:  871 LPLWAF-CADERDDCSVASKSVQSKPASVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRVKERHHSRPARPFSSISDSKRSSTEQDQ-SKAVSDQ---VSYQILEFINTPKDHRCTIRELQLHLGDWYYLDGSGRERGPSSFSELQYFVDQGIIKKHSSVFRKSDKLWVPITS 1041          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: B9HE57_POPTR (SET domain-containing family protein OS=Populus trichocarpa GN=POPTR_0007s02850g PE=4 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 9.779e-54
Identity = 107/170 (62.94%), Postives = 129/170 (75.88%), Query Frame = -1
Query:    3 SIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 509
            ++ ++RND   +SRS   KP   RGVKGT+LPVVRINACVVQD    VS  RTK R K+R+ SRS+R+HS T+DVK SS E DS S+ VNDQ   G WK  A +NTPKD +CT D+LQL+LG+WYYLDG+GHERGP SFSELQ L D+G I KYSS FRK+D++WVPV S
Sbjct:  863 TVGDDRNDTGGVSRSTLNKPPITRGVKGTVLPVVRINACVVQDH--VVSETRTKVRGKDRYHSRSARTHSATNDVKSSSVECDSQSRVVNDQDSHGCWKSTASLNTPKDRLCTADDLQLNLGDWYYLDGSGHERGPLSFSELQNLADKGTIQKYSSVFRKFDRVWVPVAS 1030          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Match: ATXR3_ARATH (Histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.116e-42
Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKV-APINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAFS+ +ERN                RGVK ++L VVR+N+ VV DQ   +  PR K R KER  SR +R    +SD K+ S ES S S A   Q  +G WK    +NTP+D +CTVD+LQLH+G+W+Y DGAG E+GP SFSELQ LV++G I  +SS FRK D++WVPVTS
Sbjct:  868 LPLWAFSVVDERN--------------QTRGVKASLLSVVRLNSLVVNDQVPPIPDPRAKVRSKERCPSRPARPSPASSDSKRESVESHSQSTASTGQDSQGLWKTDTSVNTPRDRLCTVDDLQLHIGDWFYTDGAGQEQGPLSFSELQKLVEKGFIKSHSSVFRKSDKIWVPVTS 1029          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F6HIM5_VITVI8.882e-5563.64Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A059DGD7_EUCGR9.069e-5564.00Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A059DFY2_EUCGR9.164e-5564.00Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
I1M406_SOYBN4.229e-5465.34Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
B9HE57_POPTR9.779e-5462.94SET domain-containing family protein OS=Populus tr... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATXR3_ARATH2.116e-4250.57Histone-lysine N-methyltransferase ATXR3 OS=Arabid... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001303 ID=g.arboreum_cottongen_reftransV1_0001303; Name=g.arboreum_cottongen_reftransV1_0001303; organism=Gossypium arboreum; type=contig; length=527bp
GCGGAGGTGACTGGAACCCACATTTGATCATATTTACGAAAAGCACTGCT
ATATTTCGGGATAACTCCTTGATCTACCAAAAACTGAAGTTCAGAGAATG
ATGAAGGTCCCCTTTCATGCCCAGCACCATCAAGGTAGTACCATTCACCC
AAGTGTAACTGCAACTCATCAACAGTACAAACATGGTCTTTAGGAGTATT
AATGGGTGCAACCTTCCATGATCCTTTCAAGCGTTGATCATTAACAGCCT
TTGATAGTGAATCACTTTCTGCCGATGATTTCTTGACATCACTAGTTGTC
GAGTGTGACCGGGAAGATCTTGAACAGTGTCTCTCCTTCACTCGAGTTTT
TGTGCGAGGTGCAGATACAAATGAACCCTGATCCTGAACCACACATGCAT
TTATCCGGACTACTGGAAGCATGGTTCCCTTCACTCCTCTCACAGCAGAA
GGCTTAATTTGATTCGATCTACTAATATCATTGCAATCATTTCTCTCTTC
AGCAATTGAGAAGGCCCAAGGAGGGAG
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