g.arboreum_cottongen_reftransV1_0001303, g.arboreum_cottongen_reftransV1_0001303 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: V4W3Z4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014009mg PE=4 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 1.055e-67 Identity = 124/175 (70.86%), Postives = 147/175 (84.00%), Query Frame = -1 Query: 6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527 LPPWA++ +ERND + SRS Q K + VRGVKGTMLPVVRINACVV D GSFVS PR+K R KERH SRS+RS+S+ +DV++SSAESDS SKA N+Q +GSWK +A INTPKD +CTVD+LQL LGEWYYLDGAGHERGPSSFSELQ LVDQG I K++S FRK+D++WVP+T Sbjct: 917 LPPWAYACPDERNDGSGGSRSTQSKLATVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLT 1091
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: B9RPN1_RICCO (Huntingtin interacting protein, putative OS=Ricinus communis GN=RCOM_1546600 PE=4 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 9.077e-64 Identity = 118/175 (67.43%), Postives = 138/175 (78.86%), Query Frame = -1 Query: 6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527 LPPWAFS +ERN+C SR+ KPS VRGVKGTMLPVVRINACVV+D GSFVS PR K R KER+ SRSSR +S +DVK+ +AE DS SK DQ SWK ++ +NTPKD +CTVD+LQLHLGEWYYLDG+GHE+GPSSFSELQ L QG I K+SS FRK+D++WVPVT Sbjct: 955 LPPWAFSCTDERNECGSASRTTLAKPSVVRGVKGTMLPVVRINACVVKDHGSFVSEPRIKVRGKERYPSRSSRMYSAANDVKRLTAEGDSQSKI--DQDSHSSWKSISFVNTPKDRLCTVDDLQLHLGEWYYLDGSGHEQGPSSFSELQVLASQGAIKKWSSVFRKFDRVWVPVT 1127
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: W9SAQ6_9ROSA (Putative histone-lysine N-methyltransferase OS=Morus notabilis GN=L484_018296 PE=4 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 6.185e-63 Identity = 121/176 (68.75%), Postives = 141/176 (80.11%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKV-APINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAFS +E+ D + +SRS Q KP VRGVKGTML VVRINACVV+D GSFVS PRTK R KER+ SR++RS+S +SD K+SSAE D SK+ ++Q L GSWK A INTPKD +CTVD+L LHLGEWYYLDGAGHE+GPSSFSELQ L DQ IPK SS FRK+D++WVPVTS Sbjct: 875 LPLWAFSTPDEKCDSSGMSRSTQNKPPIVRGVKGTMLSVVRINACVVKDHGSFVSEPRTKVRGKERYSSRATRSYSASSDGKRSSAEGDIQSKSGSEQGLPGSWKSSAFINTPKDRICTVDDLLLHLGEWYYLDGAGHEQGPSSFSELQALADQETIPKGSSVFRKFDRVWVPVTS 1050
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: U5FKP0_POPTR (SET domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s06870g PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 7.964e-61 Identity = 117/176 (66.48%), Postives = 137/176 (77.84%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LPPWAFS +ERND +S+S KP RGVKGT+LPVVRINACVVQD VS RTK R K+R+ SR++R+HS T+DVK+SS ESDS SK VND G WK AP+NTPKD +CT D+LQL+LGEWYYLDGAGHE+GPSSFSELQ L D G I KYSS FRK+D++WVP+TS Sbjct: 982 LPPWAFSSTDERNDTGGVSKSTLNKPPITRGVKGTVLPVVRINACVVQDH---VSETRTKVRGKDRYHSRAARTHSATNDVKRSSVESDSQSKVVNDPDSHGCWKSTAPLNTPKDCLCTADDLQLNLGEWYYLDGAGHEQGPSSFSELQNLADIGTIQKYSSVFRKFDRVWVPITS 1154
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: I1LU88_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 212.616 bits (540), Expect = 1.410e-59 Identity = 121/176 (68.75%), Postives = 146/176 (82.95%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAP-INTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAF A+ER+DC+ S+S Q KP++VRGVKG +L VVRINACVV+DQGS VS R KTRVKERH SRS+R S+TSD K+SS E DSLSKAV+DQ GS+++ INTPKDH+CT+ ELQLHLG+WYYLDG+G ERGPSSFSELQ+LVDQG+I K+SS FRK D++WVP+TS Sbjct: 860 LPLWAF-CADERDDCSVASKSVQSKPASVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRVKERHHSRSTRPFSSTSDSKRSSTEQDSLSKAVSDQ---GSYQIVEFINTPKDHLCTIRELQLHLGDWYYLDGSGRERGPSSFSELQYLVDQGIIKKHSSVFRKSDKLWVPITS 1031
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A0B2QVW7_GLYSO (Putative histone-lysine N-methyltransferase ATXR3 OS=Glycine soja GN=glysoja_040636 PE=4 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.465e-59 Identity = 121/176 (68.75%), Postives = 146/176 (82.95%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAP-INTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAF A+ER+DC+ S+S Q KP++VRGVKG +L VVRINACVV+DQGS VS R KTRVKERH SRS+R S+TSD K+SS E DSLSKAV+DQ GS+++ INTPKDH+CT+ ELQLHLG+WYYLDG+G ERGPSSFSELQ+LVDQG+I K+SS FRK D++WVP+TS Sbjct: 860 LPLWAF-CADERDDCSVASKSVQSKPASVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRVKERHHSRSTRPFSSTSDSKRSSTEQDSLSKAVSDQ---GSYQIVEFINTPKDHLCTIRELQLHLGDWYYLDGSGRERGPSSFSELQYLVDQGIIKKHSSVFRKSDKLWVPITS 1031
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A067K671_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20287 PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.590e-58 Identity = 108/176 (61.36%), Postives = 130/176 (73.86%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LPPWAFS +ERN+C ++R+ KPS VRGVKGTMLPVVRINACVV+D GS VS RTK R KER+ SR D+K+ + E + K DQ GSWK ++ INTPKD +CT D+L+LHLGEWYYLDG+GHE+GP SFSELQ L DQG I K SSAFRK+D++WVPVT+ Sbjct: 941 LPPWAFSCTDERNECGGVNRTTVAKPSTVRGVKGTMLPVVRINACVVKDHGSLVSESRTKARGKERYTSRLRVYSGAN-DLKRLTPEGNFQFKT--DQDSLGSWKSISSINTPKDRLCTADDLRLHLGEWYYLDGSGHEQGPLSFSELQLLADQGSIQKCSSAFRKFDRVWVPVTT 1113
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: M5WYN5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000055mg PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.367e-58 Identity = 110/170 (64.71%), Postives = 136/170 (80.00%), Query Frame = -1 Query: 3 SIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 509 ++ +E +DC+ +SR+ QIK + ++GVKGTMLPVVRINACVV+D GSFVS PR K R ER+ SRS+RS+S SD K+SS E DS K V+D+ +GS K + IN KD VCTVD+LQLHLG+WYYLDGAGHERGPSSFSELQ LVDQGVI +SS FRK+D++WVPV+S Sbjct: 560 AVGDEMSDCSGVSRTTQIKTTVIKGVKGTMLPVVRINACVVKDHGSFVSEPRMKVRGMERYTSRSARSYSAGSDGKRSSGEGDSQLKPVSDRGSQGSLKCITSINISKDRVCTVDDLQLHLGDWYYLDGAGHERGPSSFSELQVLVDQGVILNHSSVFRKFDKVWVPVSS 729
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: V7BVF0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G112000g PE=4 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 6.151e-58 Identity = 115/176 (65.34%), Postives = 139/176 (78.98%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAP-INTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAFS A+ER++C+ RS Q KP +VRGVKG +L VVRINACVV+DQGS VS R KTR KERH SRSSR S TSD K+SS + DS KA +DQ GS+K+ +NTPKDH+CT+ ELQLHLG+WYY DG+G ERGPSSFSELQ+LVDQG+I ++SS FRK D++WVP+TS Sbjct: 881 LPLWAFS-ADERDECSVAGRSVQSKPVSVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRGKERHHSRSSRPFSATSDSKRSSTDHDSQLKAFSDQ---GSYKIMEFLNTPKDHLCTIHELQLHLGDWYYFDGSGRERGPSSFSELQYLVDQGIIKRHSSVFRKSDKLWVPITS 1052
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: K4CFJ2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g052940.2 PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 5.803e-56 Identity = 110/176 (62.50%), Postives = 130/176 (73.86%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAF+ +E ND N + R NQ KP +RG KG MLPV+RINACVV++ GSFVS P TK R K+RH RSSR + T D K+SS E+ SK+ DQ L GS K + P+ PKD +C+ DELQLHLGEWYYLDGAGHERGP SF ELQ LVDQGVIP+ SSAFR+ D++WVPV S Sbjct: 917 LPSWAFT-PDEWNDSNVVGRPNQSKPPVLRGTKGMMLPVIRINACVVKEHGSFVSEPHTKVRGKDRHPQRSSRPYVVTGDTKRSSEEAVYRSKSRQDQELHGSSKSIMPLIIPKDRLCSADELQLHLGEWYYLDGAGHERGPFSFIELQVLVDQGVIPENSSAFRRVDRIWVPVAS 1091
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Match: ATXR3_ARATH (Histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=2 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 2.116e-42 Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKV-APINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAFS+ +ERN RGVK ++L VVR+N+ VV DQ + PR K R KER SR +R +SD K+ S ES S S A Q +G WK +NTP+D +CTVD+LQLH+G+W+Y DGAG E+GP SFSELQ LV++G I +SS FRK D++WVPVTS Sbjct: 868 LPLWAFSVVDERN--------------QTRGVKASLLSVVRLNSLVVNDQVPPIPDPRAKVRSKERCPSRPARPSPASSDSKRESVESHSQSTASTGQDSQGLWKTDTSVNTPRDRLCTVDDLQLHIGDWFYTDGAGQEQGPLSFSELQKLVEKGFIKSHSSVFRKSDKIWVPVTS 1029 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001303 ID=g.arboreum_cottongen_reftransV1_0001303; Name=g.arboreum_cottongen_reftransV1_0001303; organism=Gossypium arboreum; type=contig; length=527bpback to top |