g.arboreum_cottongen_reftransV1_0008302, g.arboreum_cottongen_reftransV1_0008302 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy TrEMBL
Match: R0GI92_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10020815mg PE=3 SV=1) HSP 1 Score: 380.563 bits (976), Expect = 1.824e-128 Identity = 185/236 (78.39%), Postives = 212/236 (89.83%), Query Frame = 1 Query: 112 KFQIRDLRKVSDAGVPILNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDTVFLDGRDIVDLDVLGLRRKVGMLFQLPVLFQGTVADNIRYGLNLMGKKLTDVEVSKLLTLADLDSSFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVEILKPSELSEAKHPMAQRFLQLSS 819 K ++ DL +V+D G IL G+++ IPKGMIVG+IGPSGSGKSTLLR+LNRLWEPP TVFLDG DI +DV+ LRR+VGMLFQLPVLFQGTVADN+RYG NL G+KL+D EV KLL+LADLD+SF KTG ELSVGQAQRVALARTLANEPEVLLLDEPTSALDPIST+NIEDVIVKLK++R +T V+VSHSIKQIQ+VADVVCL+V+GEIVE+LKPSELS AKHPMA+RFLQLSS Sbjct: 27 KIRVHDLTRVADDGSRILKGVSIDIPKGMIVGVIGPSGSGKSTLLRSLNRLWEPPESTVFLDGEDITKVDVITLRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKRQRGITTVIVSHSIKQIQKVADVVCLVVDGEIVEVLKPSELSHAKHPMAKRFLQLSS 262
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy TrEMBL
Match: W1PIC9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00019p00241340 PE=3 SV=1) HSP 1 Score: 379.407 bits (973), Expect = 6.436e-128 Identity = 186/236 (78.81%), Postives = 209/236 (88.56%), Query Frame = 1 Query: 112 KFQIRDLRKVSDAGVPILNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDTVFLDGRDIVDLDVLGLRRKVGMLFQLPVLFQGTVADNIRYGLNLMGKKLTDVEVSKLLTLADLDSSFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVEILKPSELSEAKHPMAQRFLQLSS 819 K ++RDL S GVPIL+G+ V I KG+IVGIIGPSGSGKST LRALNRLWEPPS VFLDG DI D+DVL LRRKVGMLFQLP LF+GTVADNIRYG +LMGKKL+D +VSKLL+LADLDSS K GGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED IVKLKK + +T VMVSHS+KQIQR+AD+VCLLVNGEIVE+LKP +LS+AKHPMA++FL++SS Sbjct: 26 KIRVRDLSYKSRTGVPILSGVCVDISKGLIVGIIGPSGSGKSTFLRALNRLWEPPSGAVFLDGEDIQDIDVLSLRRKVGMLFQLPALFEGTVADNIRYGPSLMGKKLSDDQVSKLLSLADLDSSLADKNGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDAIVKLKKSQGLTTVMVSHSVKQIQRIADLVCLLVNGEIVEVLKPEDLSDAKHPMARKFLEISS 261
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy TrEMBL
Match: D7KW87_ARALL (ATNAP3 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_894577 PE=3 SV=1) HSP 1 Score: 379.407 bits (973), Expect = 6.736e-128 Identity = 184/236 (77.97%), Postives = 209/236 (88.56%), Query Frame = 1 Query: 112 KFQIRDLRKVSDAGVPILNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDTVFLDGRDIVDLDVLGLRRKVGMLFQLPVLFQGTVADNIRYGLNLMGKKLTDVEVSKLLTLADLDSSFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVEILKPSELSEAKHPMAQRFLQLSS 819 K ++ DL +V+D G IL G+ V IPKG+IVG+IGPSGSGKST LR+LNRLWEPP TVFLDG DI +DV+ LRR+VGMLFQLPVLFQGTVADN+RYG NL G+KL+D EV KLL+LADLD+SF KTG ELSVGQAQRVALARTLANEPEVLLLDEPTSALDPIST+NIEDVIVKLKK+R +T V+VSHSIKQIQ+VAD+VCL+V+GEIVE+LKPSELS A HPMAQRFLQLSS Sbjct: 27 KIRVHDLTRVADDGSRILKGVTVDIPKGLIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITKVDVIALRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLIVDGEIVEVLKPSELSHATHPMAQRFLQLSS 262
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy TrEMBL
Match: A0A087HGG5_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G100800 PE=3 SV=1) HSP 1 Score: 377.096 bits (967), Expect = 5.851e-127 Identity = 182/236 (77.12%), Postives = 211/236 (89.41%), Query Frame = 1 Query: 112 KFQIRDLRKVSDAGVPILNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDTVFLDGRDIVDLDVLGLRRKVGMLFQLPVLFQGTVADNIRYGLNLMGKKLTDVEVSKLLTLADLDSSFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVEILKPSELSEAKHPMAQRFLQLSS 819 K ++RDL +VSD G IL G+ + IPKGMI+G+IGPSGSGKST LR+LNRLWEPP TVFL+G DI ++DV+ LRR+VGMLFQLPVLFQGTVADN+RYG NL G+KLT+ V KLL+LADLD+SF KTG ELSVGQAQRVALARTLANEPEVLLLDEPTSALDPIST+NIEDVIVKLKK+R +T V+VSHSIKQIQRVAD+VCL+V+GEIVE+LKP ELS+A+HPMA+RFLQLSS Sbjct: 30 KIRVRDLTRVSDDGSLILRGVTIDIPKGMIIGVIGPSGSGKSTFLRSLNRLWEPPETTVFLNGEDITNIDVITLRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLTEEAVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQRVADIVCLVVDGEIVEVLKPDELSQARHPMAKRFLQLSS 265
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy TrEMBL
Match: A0A078E9M7_BRANA (BnaA07g26730D protein OS=Brassica napus GN=BnaA07g26730D PE=3 SV=1) HSP 1 Score: 377.096 bits (967), Expect = 6.033e-127 Identity = 183/236 (77.54%), Postives = 212/236 (89.83%), Query Frame = 1 Query: 112 KFQIRDLRKVSDAGVPILNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDTVFLDGRDIVDLDVLGLRRKVGMLFQLPVLFQGTVADNIRYGLNLMGKKLTDVEVSKLLTLADLDSSFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVEILKPSELSEAKHPMAQRFLQLSS 819 K ++RDL +VSD G IL G+++ IPKGMIVG+IGPSGSGKST LR+LNRLWEPP+ TVFLDG DI ++DV+ LRR+VGMLFQLPVLF+GTVADN+RYG NL G+KL+D +V KLLT ADLD+SF KTG ELSVGQAQRVALARTLANEPEVLLLDEPTSALDPIST+NIEDVIVKLKK+R +T V+VSHSIKQIQRVAD+VCL+V+GEIVE+LKP ELS+A HPMA+RFLQLSS Sbjct: 29 KIRVRDLTRVSDDGSLILKGVSMDIPKGMIVGVIGPSGSGKSTFLRSLNRLWEPPATTVFLDGVDITNIDVITLRRRVGMLFQLPVLFEGTVADNVRYGPNLRGEKLSDQDVYKLLTFADLDASFAKKTGSELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQRVADIVCLVVDGEIVEVLKPDELSQATHPMARRFLQLSS 264
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy Swiss-Prot
Match: METN1_PSEPK (Methionine import ATP-binding protein MetN 1 OS=Pseudomonas putida (strain KT2440) GN=metN1 PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.594e-42 Identity = 90/239 (37.66%), Postives = 144/239 (60.25%), Query Frame = 1 Query: 118 QIRDLRKVSDAGVPILNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDTVFLDGRDIVDLD---VLGLRRKVGMLFQ-LPVLFQGTVADNIRYGLNLMG---KKLTDVEVSKLLTLADLDSSFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVEILKPSELS-EAKHPMAQRFLQ 810 Q+ +V+ +P LN ++ I G + G+IG SG+GKST+LR +NRL EP T+ +DG D+ + + G R++VGM+FQ +L TVADN+ L L G + D V++LL L S K +LS GQ QRV +AR L+ P++LL DE TSALDP +T ++ ++ ++ ++ ++T+V+++H + I+RV D V ++ G+IVE +E+ +HP +RF+Q Sbjct: 6 QVHKTYRVAGREIPALNPTSLTIEDGQVFGLIGHSGAGKSTMLRLINRLEEPSGGTIIVDGEDVTAFNASQLRGFRQQVGMIFQHFNLLASKTVADNVALPLALAGELSRSEIDKRVTELLARVGL-SDHAKKYPAQLSGGQKQRVGIARALSTNPKILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDRVAVMDAGQIVEQGSVAEVFLHPQHPTTKRFVQ 243
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy Swiss-Prot
Match: METN1_PSE14 (Methionine import ATP-binding protein MetN 1 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=metN1 PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.631e-42 Identity = 93/233 (39.91%), Postives = 143/233 (61.37%), Query Frame = 1 Query: 136 KVSDAGVPILNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDTVFLDGRDIVDLDVLGLRR---KVGMLFQ-LPVLFQGTVADNIRYGLNLMG---KKLTDVEVSKLLTLADLDSSFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVEILKPSELS-EAKHPMAQRFLQ 810 +V+ +P L+ ++ + G + GIIG SG+GKSTLLR +NRL P + +DG D+ LD GLRR +VGM+FQ +L TVADN+ L L G +K D V++LL L S K +LS GQ QRV +AR LA +P++LL DE TSALDP +T ++ ++ ++ ++ ++T+V+++H + I+RV D V ++ G IVE K +++ +HP +RF+Q Sbjct: 12 RVAGKEIPALHPTSLRVDGGQVFGIIGHSGAGKSTLLRLINRLETPSGGQIVVDGEDVTALDANGLRRFRQQVGMIFQHFNLLASKTVADNVAMPLTLAGDMSRKQIDQRVAELLKRVGL-SDHAKKYPAQLSGGQKQRVGIARALATKPKILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDAGVIVEQGKVADVFLHPQHPTTRRFVQ 243
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy Swiss-Prot
Match: PSTB1_PHOPR (Phosphate import ATP-binding protein PstB 1 OS=Photobacterium profundum GN=pstB1 PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 3.860e-42 Identity = 95/206 (46.12%), Postives = 127/206 (61.65%), Query Frame = 1 Query: 172 INVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDT-----VFLDGRDIVD--LDVLGLRRKVGMLFQLPVLFQGTVADNIRYGLNLMG---KKLTDVEVSKLL---TLADLDSSFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVE 750 IN+ I KG + IGPSG GKSTLLR +NR+ E + L G++I D +DV LRR+VGM+FQ P F ++ +N+ YGL L G +++ D V K L L D L + LS GQ QR+ +AR +A EPEVLLLDEPTSALDPIST IE++I LK K TV++V+H+++Q RV+D + GE+VE Sbjct: 44 INMRIAKGQVTSFIGPSGCGKSTLLRCINRMNELVDGCRVDGKIMLHGQNIYDSKVDVASLRRRVGMVFQRPNPFPKSIYENVVYGLRLQGLKERRVLDDAVEKSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELINDLKTK--YTVIIVTHNMQQAARVSDQTAFMHMGELVE 247
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy Swiss-Prot
Match: PSTB1_VIBCH (Phosphate import ATP-binding protein PstB 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=pstB1 PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 3.997e-42 Identity = 95/209 (45.45%), Postives = 128/209 (61.24%), Query Frame = 1 Query: 163 LNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSDT-----VFLDGRDIV--DLDVLGLRRKVGMLFQLPVLFQGTVADNIRYGLNLMG----KKLTDVEVSKLLTLADLDS--SFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVE 750 L+ I++ IPKG + IGPSG GKSTLLR +NR+ + T V L G++I D+DV LRR+VGM+FQ P F ++ +N+ YGL L G + L D L A D L + LS GQ QR+ +AR +A EPEVLLLDEPTSALDPIST IE++I LK K TVV+V+H+++Q RV+D + G+++E Sbjct: 42 LSDISMRIPKGQVTAFIGPSGCGKSTLLRCINRMNDLVEGTRVEGEVKLHGKNIYHPDVDVPTLRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIKNSRALDDAAEQSLRAAALWDEVKHRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELIHDLKTK--YTVVIVTHNMQQAARVSDHTAFIHMGKLIE 248
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy Swiss-Prot
Match: PSTB_PSEHT (Phosphate import ATP-binding protein PstB OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=pstB PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 4.195e-42 Identity = 94/209 (44.98%), Postives = 128/209 (61.24%), Query Frame = 1 Query: 163 LNGINVGIPKGMIVGIIGPSGSGKSTLLRALNRLWE-----PPSDTVFLDGRDIVD--LDVLGLRRKVGMLFQLPVLFQGTVADNIRYGLNLMG----KKLTDVEVSKLLTLADLDS--SFLSKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKKRRMTVVMVSHSIKQIQRVADVVCLLVNGEIVE 750 L+ +N+ IPKG + IGPSG GKSTLLR +NR+ + + L G++I D +DV LRR VGM+FQ P F ++ +N+ YGL L G +KL +V L A D L + LS GQ QR+ +AR++A PEVLLLDEPTSALDPIST IE++I LK K TVV+V+H+++Q RV+D + GE++E Sbjct: 44 LSKVNMNIPKGQVTAFIGPSGCGKSTLLRCINRMNDLVDICRIEGEILLHGQNIYDKSVDVAALRRNVGMVFQRPNPFPKSIYENVVYGLRLQGIKDKRKLDEVVEQSLRGAALWDEVKDRLHDSAFGLSGGQQQRLVIARSIAISPEVLLLDEPTSALDPISTLVIEELINDLKSK--FTVVIVTHNMQQAARVSDQTAFMYMGELIE 250 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0008302 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008302 ID=g.arboreum_cottongen_reftransV1_0008302; Name=g.arboreum_cottongen_reftransV1_0008302; organism=Gossypium arboreum; type=contig; length=1045bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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