g.arboreum_cottongen_reftransV1_0006676, g.arboreum_cottongen_reftransV1_0006676 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006676
Unique Nameg.arboreum_cottongen_reftransV1_0006676
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length589
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0006676:1..589 .
Chr1:49536637..49537643 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072VEN0_MEDTR (Serine/Threonine kinase family protein OS=Medicago truncatula GN=MTR_1g013040 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.386e-23
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 
Query:  187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+EH+ MD   K ++A + A + LGAII  L   WI+Y K SSKS K   ++SDGEKG GL P+L K  S++ V K+G    +DYK LEKAT  F   NI+GEGGFGCVYKA+ +D    A+KKL+C  Q AE+
Sbjct:   64 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLGLVPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 197
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072VCZ2_MEDTR (Serine/Threonine kinase family protein OS=Medicago truncatula GN=MTR_1g013040 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.778e-23
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 
Query:  187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+EH+ MD   K ++A + A + LGAII  L   WI+Y K SSKS K   ++SDGEKG GL P+L K  S++ V K+G    +DYK LEKAT  F   NI+GEGGFGCVYKA+ +D    A+KKL+C  Q AE+
Sbjct:   64 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLGLVPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 197
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: F6HX98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06160 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.697e-23
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:  346 DGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            D EK   L P L K  +M+ + ++GY SF+DYK+LE ATN F   NILGEGGFGCVYKA+ +D S+ AVKK+D   QDAE+
Sbjct:   17 DAEKALTLGPLLAKFNTMKVIGRKGYVSFIDYKVLETATNNFQESNILGEGGFGCVYKARLDDNSHVAVKKVDGRGQDAER 97
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072UIF8_MEDTR (Receptor-like kinase OS=Medicago truncatula GN=MTR_4g014900 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.536e-23
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:  187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+EH+ MD   K ++A + A + LGAII  L   WI+Y K SSKS K   ++SDGEKG  L P+L K  S+R V K+G    +DYK LEKAT  F   NI+GEGGFGCVYKA+ +D    A+KKL+C  Q AE+
Sbjct:   69 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLRLVPFLSKFSSVRLVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 202
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072UGR9_MEDTR (Receptor-like kinase OS=Medicago truncatula GN=MTR_4g014900 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.183e-22
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:  187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+EH+ MD   K ++A + A + LGAII  L   WI+Y K SSKS K   ++SDGEKG  L P+L K  S+R V K+G    +DYK LEKAT  F   NI+GEGGFGCVYKA+ +D    A+KKL+C  Q AE+
Sbjct:   69 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLRLVPFLSKFSSVRLVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 202
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.792e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  448 LEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCAS 573
            L+ ATN F   N+LGEG FG VY+AQF DG   AVKK+D ++
Sbjct:  412 LQVATNSFSVDNLLGEGTFGRVYRAQFEDGKVLAVKKIDSSA 453
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK5_ARATH (Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.840e-7
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:  436 DYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            D+K++E AT+KF   N LG+GGFG VYK    +G   AVK+L   S   EK
Sbjct:  329 DFKVIEAATDKFSMCNKLGQGGFGQVYKGTLPNGVQVAVKRLSKTSGQGEK 379
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A072VEN0_MEDTR4.386e-2351.49Serine/Threonine kinase family protein OS=Medicago... [more]
A0A072VCZ2_MEDTR4.778e-2351.49Serine/Threonine kinase family protein OS=Medicago... [more]
F6HX98_VITVI5.697e-2356.79Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A072UIF8_MEDTR7.536e-2351.49Receptor-like kinase OS=Medicago truncatula GN=MTR... [more]
A0A072UGR9_MEDTR1.183e-2251.49Receptor-like kinase OS=Medicago truncatula GN=MTR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SRF7_ARATH7.792e-757.14Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
CRK5_ARATH9.840e-749.02Cysteine-rich receptor-like protein kinase 5 OS=Ar... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013320Concanavalin A-like lectin/glucanase domainGENE3D2.60.120.200coord: 59..167
e-value: 7.2E-10
score: 38.3
NoneNo IPR availableGENE3D3.30.200.20coord: 168..191
e-value: 6.2E-6
score: 25.9
NoneNo IPR availablePANTHERPTHR27001:SF62PROTEIN KINASE FAMILY PROTEIN-RELATEDcoord: 35..103
coord: 121..193
NoneNo IPR availablePANTHERPTHR27001FAMILY NOT NAMEDcoord: 35..103
coord: 121..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..97
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..71
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..31
score: 0.712
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..31
score: 0.477
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
IPR017441Protein kinase, ATP binding sitePROSITEPS00107PROTEIN_KINASE_ATPcoord: 160..183
IPR000719Protein kinase domainPROSITEPS50011PROTEIN_KINASE_DOMcoord: 154..193
score: 8.556
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 133..185

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006676 ID=g.arboreum_cottongen_reftransV1_0006676; Name=g.arboreum_cottongen_reftransV1_0006676; organism=Gossypium arboreum; type=contig; length=589bp
AAAGAATCATTGTTTGAAAGAAACAAAGGGATGAAGAAGAAGCTTGTGCT
GCATCTGCTTCTTTTCCTTGTTTGTACTTTTGAAAACATTGTTGTTTTGG
CCGTACAAGGCCCTGCTTCATCACCCATTTCTACTCCCATCTCTACTTCA
ATGGCTGCCTTCTCTCCAGCTGGGATTCAACTTGGAGGTGAGGAGCACAA
GAAAATGGATCCAACCAAGAAAATGTTATTAGCTCTCATTCTTGCTGGCT
CTTCATTGGGTGCAATTATCTCTTCCTTGTTCTGTTTATGGATTTATTAC
AGGAAGAATTCAAGCAAATCCTCTAAAAATGGTGCTAAGAGCTCAGATGG
TGAAAAAGGGAATGGTTTGGCACCATATTTGGGTAAACTCAAGTCTATGA
GGACGGTTTCCAAAGAGGGTTATGCTTCGTTTATGGACTATAAGATACTT
GAAAAAGCTACAAACAAGTTCCATCATGGTAATATTCTGGGTGAGGGTGG
ATTTGGATGTGTTTACAAGGCTCAATTCAATGATGGTTCTTATGCTGCTG
TTAAGAAGTTGGACTGTGCAAGCCAAGATGCTGAAAAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom_sf
IPR017441Protein_kinase_ATP_BS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004672protein kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation