g.arboreum_cottongen_reftransV1_0006676, g.arboreum_cottongen_reftransV1_0006676 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072VEN0_MEDTR (Serine/Threonine kinase family protein OS=Medicago truncatula GN=MTR_1g013040 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.386e-23 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 Query: 187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+EH+ MD K ++A + A + LGAII L WI+Y K SSKS K ++SDGEKG GL P+L K S++ V K+G +DYK LEKAT F NI+GEGGFGCVYKA+ +D A+KKL+C Q AE+ Sbjct: 64 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLGLVPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 197
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072VCZ2_MEDTR (Serine/Threonine kinase family protein OS=Medicago truncatula GN=MTR_1g013040 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.778e-23 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 Query: 187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+EH+ MD K ++A + A + LGAII L WI+Y K SSKS K ++SDGEKG GL P+L K S++ V K+G +DYK LEKAT F NI+GEGGFGCVYKA+ +D A+KKL+C Q AE+ Sbjct: 64 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLGLVPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 197
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: F6HX98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06160 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.697e-23 Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1 Query: 346 DGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 D EK L P L K +M+ + ++GY SF+DYK+LE ATN F NILGEGGFGCVYKA+ +D S+ AVKK+D QDAE+ Sbjct: 17 DAEKALTLGPLLAKFNTMKVIGRKGYVSFIDYKVLETATNNFQESNILGEGGFGCVYKARLDDNSHVAVKKVDGRGQDAER 97
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072UIF8_MEDTR (Receptor-like kinase OS=Medicago truncatula GN=MTR_4g014900 PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 7.536e-23 Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 1 Query: 187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+EH+ MD K ++A + A + LGAII L WI+Y K SSKS K ++SDGEKG L P+L K S+R V K+G +DYK LEKAT F NI+GEGGFGCVYKA+ +D A+KKL+C Q AE+ Sbjct: 69 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLRLVPFLSKFSSVRLVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 202
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072UGR9_MEDTR (Receptor-like kinase OS=Medicago truncatula GN=MTR_4g014900 PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.183e-22 Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 1 Query: 187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+EH+ MD K ++A + A + LGAII L WI+Y K SSKS K ++SDGEKG L P+L K S+R V K+G +DYK LEKAT F NI+GEGGFGCVYKA+ +D A+KKL+C Q AE+ Sbjct: 69 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLRLVPFLSKFSSVRLVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 202
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: PERK9_ARATH (Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 2.028e-7 Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 1 Query: 427 SFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL 561 + Y+ L KATN F N+LGEGGFGCVYK DG AVK+L Sbjct: 363 ALFSYEELVKATNGFSQENLLGEGGFGCVYKGILPDGRVVAVKQL 407
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.771e-7 Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 1 Query: 346 DGEKGNGLAPYLGKLKSMRTVSKEGYASF------MDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL 561 DG + A K S R A+F + + L +ATN FH+ +++G GGFG VYKAQ DGS A+KKL Sbjct: 841 DGHSHSATANSAWKFTSAREALSINLAAFEKPLRKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKL 918
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.822e-7 Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 1 Query: 346 DGEKGNGLAPYLGKLKSMRTVSKEGYASF------MDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL 561 DG + A K S R A+F + + L +ATN FH+ +++G GGFG VYKAQ DGS A+KKL Sbjct: 841 DGHSHSATANSAWKFTSAREALSINLAAFEKPLRKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKL 918
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.846e-7 Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1 Query: 376 YLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 + KL + RT S F + L+ AT F GN+LGEG G VY+A+++DG AVKK+D D+ K Sbjct: 374 FANKLNAKRTTSTRSAVEF-ELSDLQSATANFSPGNLLGEGSIGRVYRAKYSDGRTLAVKKIDSTLFDSGK 443
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: PERK8_ARATH (Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 3.045e-7 Identity = 24/54 (44.44%), Postives = 31/54 (57.41%), Query Frame = 1 Query: 427 SFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 S+ Y L + T+ F N+LGEGGFGCVYK +DG AVK+L E+ Sbjct: 325 SWFSYDELSQVTSGFSEKNLLGEGGFGCVYKGVLSDGREVAVKQLKIGGSQGER 378
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: PEK13_ARATH (Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 4.932e-7 Identity = 25/50 (50.00%), Postives = 30/50 (60.00%), Query Frame = 1 Query: 439 YKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 Y+ L T F NILGEGGFGCVYK + NDG AVK+L S ++ Sbjct: 343 YEELTDITEGFSKHNILGEGGFGCVYKGKLNDGKLVAVKQLKVGSGQGDR 392
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 5.785e-7 Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 1 Query: 433 MDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAE 585 +DY+ ++ ATN F N +G GGFG VYK F++G+ AVK+L S+ + Sbjct: 324 LDYRAIQAATNDFSENNKIGRGGFGDVYKGTFSNGTEVAVKRLSKTSEQGD 374
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 7.071e-7 Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1 Query: 433 MDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAE 585 +DY+ ++ ATN F N +G GGFG VYK F++G AVK+L S+ E Sbjct: 339 LDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGE 389
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=3 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 7.075e-7 Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1 Query: 433 MDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAE 585 +DY+ ++ ATN F N +G GGFG VYK F++G AVK+L S+ E Sbjct: 341 LDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGE 391
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 7.694e-7 Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 1 Query: 436 DYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 D+K +E ATNKF N LG+GGFG VYK F G AVK+L S E+ Sbjct: 340 DFKAIEAATNKFCETNKLGQGGFGEVYKGIFPSGVQVAVKRLSKTSGQGER 390 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 22
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006676 ID=g.arboreum_cottongen_reftransV1_0006676; Name=g.arboreum_cottongen_reftransV1_0006676; organism=Gossypium arboreum; type=contig; length=589bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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