g.arboreum_cottongen_reftransV1_0006676, g.arboreum_cottongen_reftransV1_0006676 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072VEN0_MEDTR (Serine/Threonine kinase family protein OS=Medicago truncatula GN=MTR_1g013040 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.386e-23 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 Query: 187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+EH+ MD K ++A + A + LGAII L WI+Y K SSKS K ++SDGEKG GL P+L K S++ V K+G +DYK LEKAT F NI+GEGGFGCVYKA+ +D A+KKL+C Q AE+ Sbjct: 64 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLGLVPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 197
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072VCZ2_MEDTR (Serine/Threonine kinase family protein OS=Medicago truncatula GN=MTR_1g013040 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.778e-23 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 Query: 187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+EH+ MD K ++A + A + LGAII L WI+Y K SSKS K ++SDGEKG GL P+L K S++ V K+G +DYK LEKAT F NI+GEGGFGCVYKA+ +D A+KKL+C Q AE+ Sbjct: 64 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLGLVPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 197
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: F6HX98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06160 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.697e-23 Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1 Query: 346 DGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 D EK L P L K +M+ + ++GY SF+DYK+LE ATN F NILGEGGFGCVYKA+ +D S+ AVKK+D QDAE+ Sbjct: 17 DAEKALTLGPLLAKFNTMKVIGRKGYVSFIDYKVLETATNNFQESNILGEGGFGCVYKARLDDNSHVAVKKVDGRGQDAER 97
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072UIF8_MEDTR (Receptor-like kinase OS=Medicago truncatula GN=MTR_4g014900 PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 7.536e-23 Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 1 Query: 187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+EH+ MD K ++A + A + LGAII L WI+Y K SSKS K ++SDGEKG L P+L K S+R V K+G +DYK LEKAT F NI+GEGGFGCVYKA+ +D A+KKL+C Q AE+ Sbjct: 69 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLRLVPFLSKFSSVRLVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 202
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072UGR9_MEDTR (Receptor-like kinase OS=Medicago truncatula GN=MTR_4g014900 PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.183e-22 Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 1 Query: 187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+EH+ MD K ++A + A + LGAII L WI+Y K SSKS K ++SDGEKG L P+L K S+R V K+G +DYK LEKAT F NI+GEGGFGCVYKA+ +D A+KKL+C Q AE+ Sbjct: 69 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLRLVPFLSKFSSVRLVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 202
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: Y1864_ARATH (Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.039e-8 Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1 Query: 346 DGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLD 564 D K P + K+ S+R +G +Y++LE ATNKF N+L GG GC+Y+A ++ S VKKLD Sbjct: 112 DSVKSVTTKPTVHKIDSVR----KGTIPVYEYQLLESATNKFSDSNVLSRGGRGCLYRACLDEKSSVTVKKLD 180
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: Y1497_ARATH (Probable receptor-like protein kinase At1g49730 OS=Arabidopsis thaliana GN=At1g49730 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 1.085e-8 Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1 Query: 439 YKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 YK + ATN F+ ++G+GGFG VYKA+FNDG AAVKK++ S+ AE+ Sbjct: 319 YKEMTNATNDFN--TVIGQGGFGTVYKAEFNDGLIAAVKKMNKVSEQAEQ 366
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: PERK3_ARATH (Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2) HSP 1 Score: 55.8398 bits (133), Expect = 3.839e-8 Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 Query: 421 YASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 + S Y L +ATNKF N+LGEGGFG VYK N+G+ AVK+L S EK Sbjct: 167 HQSTFTYGELARATNKFSEANLLGEGGFGFVYKGILNNGNEVAVKQLKVGSAQGEK 222
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 4.197e-8 Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 1 Query: 448 LEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL--DCASQDAE 585 L K+TN F NI+G GGFG VYKA F DGS AAVK+L DC + E Sbjct: 747 LLKSTNNFSQANIIGCGGFGLVYKANFPDGSKAAVKRLSGDCGQMERE 794
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: TMK4_ARATH (Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 6.299e-8 Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1 Query: 415 EGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCAS 573 EG + + ++L + TN F NILG GGFG VY + +DG+ AVK+++CA+ Sbjct: 560 EGGSVTIPMEVLRQVTNNFSEDNILGRGGFGVVYAGELHDGTKTAVKRMECAA 612
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 8.268e-8 Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 Query: 436 DYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL 561 D+K +E ATNKF N LGEGGFG VYK + ++G+ AVK+L Sbjct: 339 DFKTIEAATNKFSTSNKLGEGGFGAVYKGKLSNGTDVAVKRL 380
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK15_ARATH (Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 9.854e-8 Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 433 MDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCAS 573 +DY+++ ATNKF N +G+GGFG VYK F++G+ AVK+L +S Sbjct: 325 LDYRMIRAATNKFSENNKIGQGGFGEVYKGTFSNGTEVAVKRLSKSS 371
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: Y4345_ARATH (Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana GN=At4g34500 PE=2 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 1.413e-7 Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1 Query: 418 GYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588 G+ + K LE AT F N++GEGG+G VY+A F+DGS AAVK L AEK Sbjct: 128 GWGKWYSLKDLEIATRGFSDDNMIGEGGYGVVYRADFSDGSVAAVKNLLNNKGQAEK 184
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: NIK3_ARATH (Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 1.537e-7 Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1 Query: 418 GYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL-DC 567 G+ +K L ATN F+ NILG GG+G VYK NDG+ AVK+L DC Sbjct: 284 GHLKRYTFKELRSATNHFNSKNILGRGGYGIVYKGHLNDGTLVAVKRLKDC 334
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK22_ARATH (Cysteine-rich receptor-like protein kinase 22 OS=Arabidopsis thaliana GN=CRK22 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 1.720e-7 Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 436 DYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCAS-QDAEK 588 ++K +E ATNKF N LGEG FG VYK +F++G+ AVK+L S QD +K Sbjct: 342 EFKTIEAATNKFSKSNKLGEGRFGEVYKGKFSNGTEVAVKRLSKVSGQDTKK 393 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 22
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006676 ID=g.arboreum_cottongen_reftransV1_0006676; Name=g.arboreum_cottongen_reftransV1_0006676; organism=Gossypium arboreum; type=contig; length=589bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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