g.arboreum_cottongen_reftransV1_0006676, g.arboreum_cottongen_reftransV1_0006676 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006676
Unique Nameg.arboreum_cottongen_reftransV1_0006676
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length589
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0006676:1..589 .
Chr1:49536637..49537643 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A067DYW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012975mg PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.009e-26
Identity = 88/147 (59.86%), Postives = 109/147 (74.15%), Query Frame = 1 
Query:  151 MAAFSPAGIQLGGEE--HKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYA-SFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDA 582
            MAAFSP GIQ+G E+  H  MD   K+L+ALI+A S+L  II +L CLW+Y+ K S KSS   AKS D E G  L+ +LGK  S+R VSK+G A SF++YK+LEKAT+ FH  NILGEGGFGCVYKA+ +D  + AVKKLDCA+QDA
Sbjct:   45 MAAFSP-GIQMGSEDPHHHHMDAHHKLLIALIIACSALCLIILALLCLWLYHLKYSFKSSNKNAKSKDSENGVVLSSFLGKFTSVRMVSKKGSAISFIEYKLLEKATDSFHESNILGEGGFGCVYKAKLDDNLHVAVKKLDCATQDA 190
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: D7SUZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06050 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.425e-26
Identity = 78/146 (53.42%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:  151 MAAFSPAGIQLGGEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            MAAFSPA IQ G EE++K D  KK  +AL +A ++LG  I  L  LWI+ +K S KS K+ A+SSD EK   L P L K  +M+ + ++G  S +DYK+LE ATN F   NILGEGGFGCVYKA+ +D S+ AVKK+D   QDAE+
Sbjct:   52 MAAFSPA-IQEGSEENQK-DSHKKTFIALTVASAALGVTILILLSLWIH-KKCSQKSHKSNAQSSDAEKALTLGPLLAKFNTMKVIGRKGSVSCIDYKVLETATNNFQESNILGEGGFGCVYKARLDDNSHVAVKKIDGRGQDAER 194
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: V4TSN2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008263mg PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.094e-25
Identity = 87/147 (59.18%), Postives = 108/147 (73.47%), Query Frame = 1 
Query:  151 MAAFSPAGIQLGGEE--HKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYA-SFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDA 582
            MAAFSP GIQ+G E+  H  MD   K+L+ALI+A S+L  II +L CLW+Y+ K S KSS   AKS D E G  L+ +LGK  S+R V K+G A SF++YK+LEKAT+ FH  NILGEGGFGCVYKA+ +D  + AVKKLDCA+QDA
Sbjct:   45 MAAFSP-GIQMGSEDPHHHHMDAHHKLLIALIIACSALCLIILALLCLWLYHLKYSFKSSNKNAKSKDSENGVVLSSFLGKFTSVRMVHKKGSAISFIEYKLLEKATDSFHESNILGEGGFGCVYKAKLDDNLHVAVKKLDCATQDA 190
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A059CPM6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01681 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.585e-25
Identity = 73/145 (50.34%), Postives = 100/145 (68.97%), Query Frame = 1 
Query:  154 AAFSPAGIQLGGEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            AAFSP     GG  H+ +D  +K+L+ALI + S +GAII     LW+Y  K + KS+K  +  S+ E+G  LAP+LGK  S++TVS++   +F +YK+LEKA+N F   N+LGEGGFG VYKA+ +D  + AVKKLDCASQDA +
Sbjct:   59 AAFSP---DTGGRRHR-LDSHEKLLVALIASCSLVGAIILIFMGLWLYQNKFTKKSTKKSSLRSEAERGLALAPFLGKFSSLKTVSRKNSIAFFEYKLLEKASNSFSDSNVLGEGGFGRVYKARLDDDKHVAVKKLDCASQDAVR 199
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: I1M9F9_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.953e-24
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 1 
Query:  151 MAAFSPAGIQLGGEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            M+A SP GI +G E+ + MD  KKM++A+ +A +SLGA+I  + C+WIYY K  SKS     + SD EKG   +P+L K  S++ V K+G    +DYK +EK T  F   NILGEGGFGCVYKA  +D    AVKKL C +Q AE+
Sbjct:   45 MSASSP-GIVMGAEQ-QHMDSHKKMVIAVAVASTSLGAVILCVLCIWIYYTKYPSKSKGKNVQRSDAEKGLASSPFLSKFSSIKLVGKKGCVPIIDYKQIEKTTGNFEEINILGEGGFGCVYKAHLDDNLDVAVKKLHCENQYAEQ 188
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A0B2P9A0_GLYSO (Putative receptor-like protein kinase OS=Glycine soja GN=glysoja_037631 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.953e-24
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 1 
Query:  151 MAAFSPAGIQLGGEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            M+A SP GI +G E+ + MD  KKM++A+ +A +SLGA+I  + C+WIYY K  SKS     + SD EKG   +P+L K  S++ V K+G    +DYK +EK T  F   NILGEGGFGCVYKA  +D    AVKKL C +Q AE+
Sbjct:   45 MSASSP-GIVMGAEQ-QHMDSHKKMVIAVAVASTSLGAVILCVLCIWIYYTKYPSKSKGKNVQRSDAEKGLASSPFLSKFSSIKLVGKKGCVPIIDYKQIEKTTGNFEEINILGEGGFGCVYKAHLDDNLDVAVKKLHCENQYAEQ 188
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: C6TAW1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.194e-24
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 1 
Query:  151 MAAFSPAGIQLGGEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            M+A SP GI +G E+ + MD  KKM++A+ +  +SLGA+I  L C+WIYY K  SKS     + SD EKG   +P+L K  S++ V K+G    +DYK +EKAT  F   NILG+GGFGCVYKA  +D    AVKKL C +Q AE+
Sbjct:   46 MSASSP-GIVMGAEQ-QHMDSHKKMVIAVAVVSTSLGAVILCLLCIWIYYTKYPSKSKGKNVQRSDAEKGLASSPFLSKFSSIKLVGKKGCVPIIDYKQIEKATGNFKEINILGKGGFGCVYKAHLDDNLDVAVKKLHCENQYAEQ 189
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A068VGI3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_288 OS=Coffea canephora GN=GSCOC_T00005568001 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.381e-24
Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 1 
Query:  151 MAAFSP-AGIQLGGEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDA 582
            MA  SP  G+Q G E+H +MD  +K+++ALI A ++LGAI+  +   WIY++K++SKS  +   SSDG +G     +L K  S++   ++ + + MDYK LE ATN F   +ILGEGGFGCVYKAQ  D  +AAVK+LD  +QDA
Sbjct:   57 MAHSSPGPGVQAGTEKHHQMDSNRKLVIALIAASTALGAILFLMLFFWIYHKKHTSKSQTDSLHSSDGLEGLAFGSFLAKYNSLKASCRKRFVAVMDYKALETATNNFCQSDILGEGGFGCVYKAQLEDNQFAAVKRLDGGTQDA 201
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: I1MWX5_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.746e-24
Identity = 72/146 (49.32%), Postives = 96/146 (65.75%), Query Frame = 1 
Query:  151 MAAFSPAGIQLGGEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            M+A SP GI +G E+ + MD  KKM++A+ +A +SLGA+I  + C+WIYY K  SKS     + SD EKG   +P+L K  S++ V K+G    +DYK +EKAT  F   NILG+GGFGCVYKA  +D    AVKKL C +Q AE+
Sbjct:   46 MSASSP-GIVMGAEQ-QHMDSHKKMVIAVAVASTSLGAVILCVLCIWIYYTKYPSKSKGKNVQRSDAEKGLASSPFLSKFSSIKLVGKKGCVPIIDYKQIEKATGNFKEINILGKGGFGCVYKAHLDDNLDVAVKKLHCENQYAEQ 189
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A0B2QS56_GLYSO (Putative receptor-like protein kinase OS=Glycine soja GN=glysoja_036221 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.746e-24
Identity = 72/146 (49.32%), Postives = 96/146 (65.75%), Query Frame = 1 
Query:  151 MAAFSPAGIQLGGEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            M+A SP GI +G E+ + MD  KKM++A+ +A +SLGA+I  + C+WIYY K  SKS     + SD EKG   +P+L K  S++ V K+G    +DYK +EKAT  F   NILG+GGFGCVYKA  +D    AVKKL C +Q AE+
Sbjct:   46 MSASSP-GIVMGAEQ-QHMDSHKKMVIAVAVASTSLGAVILCVLCIWIYYTKYPSKSKGKNVQRSDAEKGLASSPFLSKFSSIKLVGKKGCVPIIDYKQIEKATGNFKEINILGKGGFGCVYKAHLDDNLDVAVKKLHCENQYAEQ 189
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.792e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  448 LEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCAS 573
            L+ ATN F   N+LGEG FG VY+AQF DG   AVKK+D ++
Sbjct:  412 LQVATNSFSVDNLLGEGTFGRVYRAQFEDGKVLAVKKIDSSA 453
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK5_ARATH (Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.840e-7
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:  436 DYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            D+K++E AT+KF   N LG+GGFG VYK    +G   AVK+L   S   EK
Sbjct:  329 DFKVIEAATDKFSMCNKLGQGGFGQVYKGTLPNGVQVAVKRLSKTSGQGEK 379
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067DYW2_CITSI2.009e-2659.86Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
D7SUZ7_VITVI4.425e-2653.42Putative uncharacterized protein OS=Vitis vinifera... [more]
V4TSN2_9ROSI1.094e-2559.18Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A059CPM6_EUCGR1.585e-2550.34Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
I1M9F9_SOYBN2.953e-2449.32Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
A0A0B2P9A0_GLYSO2.953e-2449.32Putative receptor-like protein kinase OS=Glycine s... [more]
C6TAW1_SOYBN4.194e-2449.32Putative uncharacterized protein OS=Glycine max PE... [more]
A0A068VGI3_COFCA4.381e-2447.59Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
I1MWX5_SOYBN5.746e-2449.32Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
A0A0B2QS56_GLYSO5.746e-2449.32Putative receptor-like protein kinase OS=Glycine s... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SRF7_ARATH7.792e-757.14Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
CRK5_ARATH9.840e-749.02Cysteine-rich receptor-like protein kinase 5 OS=Ar... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013320Concanavalin A-like lectin/glucanase domainGENE3D2.60.120.200coord: 59..167
e-value: 7.2E-10
score: 38.3
NoneNo IPR availableGENE3D3.30.200.20coord: 168..191
e-value: 6.2E-6
score: 25.9
NoneNo IPR availablePANTHERPTHR27001:SF62PROTEIN KINASE FAMILY PROTEIN-RELATEDcoord: 35..103
coord: 121..193
NoneNo IPR availablePANTHERPTHR27001FAMILY NOT NAMEDcoord: 35..103
coord: 121..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..97
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..71
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..31
score: 0.712
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..31
score: 0.477
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
IPR017441Protein kinase, ATP binding sitePROSITEPS00107PROTEIN_KINASE_ATPcoord: 160..183
IPR000719Protein kinase domainPROSITEPS50011PROTEIN_KINASE_DOMcoord: 154..193
score: 8.556
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 133..185

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006676 ID=g.arboreum_cottongen_reftransV1_0006676; Name=g.arboreum_cottongen_reftransV1_0006676; organism=Gossypium arboreum; type=contig; length=589bp
AAAGAATCATTGTTTGAAAGAAACAAAGGGATGAAGAAGAAGCTTGTGCT
GCATCTGCTTCTTTTCCTTGTTTGTACTTTTGAAAACATTGTTGTTTTGG
CCGTACAAGGCCCTGCTTCATCACCCATTTCTACTCCCATCTCTACTTCA
ATGGCTGCCTTCTCTCCAGCTGGGATTCAACTTGGAGGTGAGGAGCACAA
GAAAATGGATCCAACCAAGAAAATGTTATTAGCTCTCATTCTTGCTGGCT
CTTCATTGGGTGCAATTATCTCTTCCTTGTTCTGTTTATGGATTTATTAC
AGGAAGAATTCAAGCAAATCCTCTAAAAATGGTGCTAAGAGCTCAGATGG
TGAAAAAGGGAATGGTTTGGCACCATATTTGGGTAAACTCAAGTCTATGA
GGACGGTTTCCAAAGAGGGTTATGCTTCGTTTATGGACTATAAGATACTT
GAAAAAGCTACAAACAAGTTCCATCATGGTAATATTCTGGGTGAGGGTGG
ATTTGGATGTGTTTACAAGGCTCAATTCAATGATGGTTCTTATGCTGCTG
TTAAGAAGTTGGACTGTGCAAGCCAAGATGCTGAAAAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom_sf
IPR017441Protein_kinase_ATP_BS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004672protein kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation