g.arboreum_cottongen_reftransV1_0016633, g.arboreum_cottongen_reftransV1_0016633 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: B9H6U3_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0005s19660g PE=4 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.912e-10 Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 3 Query: 330 HGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSN-----SSGIKRAKVSEASSKQ----SLAEYLAA 554 H A N+ GPEC++D SM++DPWQHL+P+ W + ++L PG+SN S +K++ V+E+S+K SLAEYLAA Sbjct: 248 HSRGFAPNEAQGPECFYDNSMVEDPWQHLEPVLWSGLDDWGNNLNGPGSSNSLLPKSISMKKSSVAESSNKSTSGVSLAEYLAA 331
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A067LAF3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15897 PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 2.975e-8 Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 3 Query: 132 NPGFSPADGRSFNYGAARPQ--MFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKV---SEASSKQSLAEYLAASFNKAV 572 NP F P SFNYG RP G NP S GRG+G + S GR+ GRG+GF+ H S+ L E ++D+SM++DPWQ L+P+ W+ G+D S+ +K+ +V S SS Q+LAEYLAA+FN++V Sbjct: 189 NPNFQPEGNHSFNYGQGRPLSPRIGNNPYFG-SGRGGSSTHSGRGQGQWHGSSRSQVSGRNGGRGRGFYSHGIGSDAALRAESFYDKSMVEDPWQRLEPVLWK----GLDGSSDSWLPKSASMKKPRVSESSNKSSSQNLAEYLAAAFNESV 335
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: B9RJY4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039660 PE=4 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 4.245e-8 Identity = 58/147 (39.46%), Postives = 77/147 (52.38%), Query Frame = 3 Query: 132 NPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNS---SGIKRAK------VSEASSKQSLAEY 545 NPGF PA SFNYG RP G NP + S RG+G + + G G+S RG+GFH AS + GPE + D+SM++DPW+ L+P+ W+ E P +SNS I R K + ++SKQSLAEY Sbjct: 83 NPGFQPARSPSFNYGQGRPPWSGNNPC-PRSVHGGSSTYSRRGQGQWHGSNRGQISGQSGRRGRGFHSRGPASGEAFGPESFHDKSMVEDPWKQLEPVVWKMLE-------VPRSSNSWLPKSISRKKPRPSEPSNNSNSKQSLAEY 221
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: I1MB09_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 63.1586 bits (152), Expect = 5.290e-8 Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 3 Query: 327 FHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAP---------GTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE 584 FHGH S N GP+ +++ SM++DPW+HL+PI W+ + +++ P TS A ++SS+ SLAEYLA++FN+A E Sbjct: 266 FHGHRSNENTARGPDRFYNRSMVEDPWEHLEPIIWKANDGYLNTSRIPLNSQPWISKATSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAE 360
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A0B2RZR4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009338 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 5.490e-8 Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 3 Query: 327 FHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAP---------GTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE 584 FHGH S N GP+ +++ SM++DPW+HL+PI W+ + +++ P TS A ++SS+ SLAEYLA++FN+A E Sbjct: 248 FHGHRSNENTARGPDRFYNRSMVEDPWEHLEPIIWKANDGYLNTSRIPLNSQPWISKATSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAE 342
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A0B2R1K7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019468 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 7.984e-8 Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3 Query: 327 FHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEASSKQ---------------SLAEYLAASFNKAVEGTE 584 FHGH S N + GP+ ++ SM++DPW+HL+PI W+ + +++ P S + +S+ASS + SLAEYLA++FN+A E Sbjct: 247 FHGHRSNENTVHGPDRFYKRSMVEDPWEHLEPIIWKANDGYLNTSRVPLNS------QPWISKASSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAE 341
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: K7K9X7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 7.984e-8 Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3 Query: 327 FHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEASSKQ---------------SLAEYLAASFNKAVEGTE 584 FHGH S N + GP+ ++ SM++DPW+HL+PI W+ + +++ P S + +S+ASS + SLAEYLA++FN+A E Sbjct: 247 FHGHRSNENTVHGPDRFYKRSMVEDPWEHLEPIIWKANDGYLNTSRVPLNS------QPWISKASSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAE 341
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A022RX99_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022534mg PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.019e-7 Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 3 Query: 366 PECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGT--SNSSGIKRAKVSEASSK-----QSLAEYLAASFNKAVE 575 P+ Y+ + M++DPW+ L P+ W+ G+D+LG+ + S +KRAKVS ++K QSLAEYLAASFN + + Sbjct: 176 PDLYYRKEMVEDPWKMLTPVIWK----GVDALGSDQSWLPKSIAVKRAKVSPEAAKTSISQQSLAEYLAASFNDSTD 248
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: V4MEG9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025760mg PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 8.312e-7 Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 3 Query: 360 LGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEAS-----SKQSLAEYLAASFNKAV 572 LG E ++ SM +DPW++LKP+ W+ G S + G +NS K+ +SEAS ++QSLAEYLAAS ++A Sbjct: 237 LGAERFYSNSMAEDPWKYLKPVLWKSCSDGASS-NSTGQANSVAPKKPMISEASHTPSKNQQSLAEYLAASLDEAT 311
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A059AU65_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00032 PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 9.387e-7 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 3 Query: 354 KMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDS---------LGAPGTSNSSGIKRAKVSEASSK----QSLAEYLAASFNKAVEGT 581 + LGPE +F ESML+DPW+ LKP+ WR G+DS +P S K+ +V+E+ +K +LAE+LAASFN+ V+ T Sbjct: 240 RPLGPERFFHESMLEDPWKDLKPVLWR----GVDSPFVGSSSRGSSSPWMPESIRPKKPRVAESPNKFGSGLNLAEFLAASFNETVKET 324 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 20
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BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016633 ID=g.arboreum_cottongen_reftransV1_0016633; Name=g.arboreum_cottongen_reftransV1_0016633; organism=Gossypium arboreum; type=contig; length=930bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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