g.arboreum_cottongen_reftransV1_0018556, g.arboreum_cottongen_reftransV1_0018556 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A067HHD9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016553mg PE=4 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.240e-73 Identity = 152/315 (48.25%), Postives = 194/315 (61.59%), Query Frame = -2 Query: 727 QEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSS---SSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXX----------XXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTG---------------DLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSD--SLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRR 1581 +E HS NQLFSKHSRSQLCD CD SPASIFCETE SV C+NCDWESH S+ SS+HNRRPIE F+GCPSVNE+ +I+G +DL K + + DL +WE P S DDL+VSS++ H F+ V PLPKNRNA GQHKEE+LHQLR+LAK +P ++N Q G ++T D P FPAYE+S L++FGD+ + +Q +P + + EE +VP+KH + + + G QH +T S +V+VHELNSQERDSA+SRYKEK+KTRR Sbjct: 47 KEVHS-TNQLFSKHSRSQLCDVCDASPASIFCETEHSVLCTNCDWESHSQSNLRVSSVHNRRPIESFSGCPSVNEMFAIIGFDDLDSKALFLNDETRNYSHFDGVDSDGFSDLFAWETPDFVSLDDLIVSSNAGHNFQAIGVPPLPKNRNAAGGQHKEEMLHQLRQLAKLDPNFKYENANIDEPIVGFHSLVPEPISQPGNMNTGSELDAEPNRFPAYEASTLQWFGDSFDHANQ--LPSTLFKSCKEESFIVPEKHFDTDGFVKNINEGGEGQSQHPTNTEKSSVFHRVSVHELNSQERDSALSRYKEKKKTRR 358
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A022S384_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009095mg PE=4 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 5.239e-73 Identity = 155/319 (48.59%), Postives = 195/319 (61.13%), Query Frame = -2 Query: 643 EKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHG---FKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQT---GTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECA-VVPDKHLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVE 1578 E HS NQLF KHSRS LCD+C+ SPASIFC TE +V C NCDWE+H ++ S H+RRP+EGF GCPS+ EL+ +G+EDLG+K D WLDLL WE P I+S DDL+ S+D F+ V PLPKNRNA CGQHKEE+ QLR +AK +P S + DL+ G N+T PI P+YE++ L++ + D P S + +VPDK + + H + + ELNS ERDSAISRYKEK+KTRR+DKHIRYESRK RAESRTR+KGRFAK++ Sbjct: 37 EVHS-TNQLFRKHSRSLLCDSCNSSPASIFCSTESAVLCQNCDWETHN-NARSAHDRRPLEGFNGCPSLTELLGYLGLEDLGKKSFDFGGENDGDWLDLLVWETPSIASLDDLIASNDCADSSPSFQAMGVPPLPKNRNAVCGQHKEEIFCQLRAMAKKDPNFS-GSLEDLELQVPGKCEPDLENNTEPISVPSYETNELKWSSFTSGVPDDEGFPSSNFIDSLFDMNHLVPDKDSDFGDGTDIGNGFEEIHHHVPVDSKPFEVPPPARELNSHERDSAISRYKEKKKTRRYDKHIRYESRKARAESRTRVKGRFAKID 352
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: W9SZQ5_9ROSA (Zinc finger protein CONSTANS-LIKE 13 OS=Morus notabilis GN=L484_020475 PE=4 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 2.306e-72 Identity = 158/345 (45.80%), Postives = 199/345 (57.68%), Query Frame = -2 Query: 640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXX--XXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQT----------------GTVHTSCTNDTAPIPFPAYESSALRF-FGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGN---------QQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590 S +E H NQLF+KH+RSQLCDACD +PASIFC E SV C NCDWE H + S +H+RRP+EGF GCPSV EL++I+G ED+ +K D DLL W+ P + D L+ SDS F+ + PLPKNRNA CGQHKEE+L QLRELAK EP S DL++ V + C + P F A+E+ ++ + E Q VP + +E +KH SD +G+ QH +D+ + PK EL SQER++AISRYKEKRKTRR++K IRYESRKVRAESRTRIKGRFAK+ H Sbjct: 32 SCDREVHG-TNQLFAKHARSQLCDACDDAPASIFCTAESSVLCQNCDWERHNDTVSVVHHRRPLEGFNGCPSVTELLAILGFEDVDKKGLFWAEENGFFDRSSDLLMWDVPSV-VGLDDLIVSDSSRSFQAMGIPPLPKNRNAVCGQHKEEILSQLRELAKKEPDSSNYENVDLESLLGFEAIVPDPVQPGKMCVGSHCEAEEEPNTFSAFEARTCQWCINCSSENVHQDVVPQTSSTSRLQESCRDSEKH---------SDMMGDSVSHANDAHNQHPVDSNALPDFPKTFPCELTSQERETAISRYKEKRKTRRYEKRIRYESRKVRAESRTRIKGRFAKIGH 365
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: G7KQZ2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g108150 PE=4 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 7.486e-72 Identity = 154/340 (45.29%), Postives = 206/340 (60.59%), Query Frame = -2 Query: 640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXX---------XXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVV--------PDKHL--GSSRTIPVS--DSLGNQQHQIDTGTVSALPKVA--VHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590 S +E HS NQLFSKH+RS +CD+CD SPA+I C TE SVFC NCDWE+H S SS H RR +EGFTGCPSV EL+SI+G++D+G+K +G D+ W+ P S DDL+ SS S H ++ +V PLPKNR A CG+H+EE+L+QLRE+ KSEP +D + + TS D P+ E + ++ E QV + + H EE +V P H G + + P++ ++ G + + T+S K +EL SQERDSA+ RYK+K+KTRR+DKHIRYESRKVRAESRTR+KGRFAK++H Sbjct: 42 SCDREVHS-TNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRSLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGFVGYEIEGLSDMFVWDAPSFVSLDDLISSSPSSHNYRAMEVPPLPKNRKAACGRHREEILNQLREMTKSEP---YDPEEYIPPANLSTSFDCDVKADIVPSNE-----WLRESSEPMYQVVPVDTSFKAHTEEISVKHSVSSVGEPHTHCNNGGTPSEPLNHCNNGGTPSEYVKSETLSTTSKAVPPPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVKGRFAKIDH 372
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A097DC51_9MYRT (Zinc finger protein CONSTANS-LIKE 10 OS=Lagerstroemia indica PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 1.268e-71 Identity = 144/322 (44.72%), Postives = 203/322 (63.04%), Query Frame = -2 Query: 640 NQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDN------TGDLQ------TGTVHTSCT---NDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1560 N LF+KH+RS LCD CD + AS+FCET +SV CS+CDW++H +HNRRP+EGF+GCPS +E++ +G +++ + DG++D + WE P S DDL+VSS++ G + DV PLPKNRNA CG+HKEE+L Q+R L +SE L+F+N GDLQ T +C + + P +E+ A ++ D+ +M +Q + L + E P++ ++S G ++ + T LP+V+ ++LNSQER+SAISRYKEKRKTRR+DKHIRYESRK RAESRTR++GRFAKV H Sbjct: 41 NPLFTKHTRSLLCDFCDSASASVFCETHRSVLCSSCDWDAH---DGVVHNRRPVEGFSGCPSASEILGALGFDEI-KGTLLGGEEGVDGFVDSVLWETPTFVSLDDLIVSSENFGGLQAFDVPPLPKNRNATCGKHKEEILRQIRLLERSETCLNFENADVLEPVGDLQFQDAGPTAIPEKNCLGFKDHWESLVVPDHEAVAFQWLSDDGDMKNQASNSLALLSSYHEGNLTNPEEKPEVGSLSCANESEGQPENPVSANTPPVLPRVSQYDLNSQERESAISRYKEKRKTRRYDKHIRYESRKARAESRTRVRGRFAKVNH 358
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: HD1_ORYSJ (Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 3.920e-9 Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = -2 Query: 649 LNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 789 +S +R++ + RY+EK+K R+F+K IRYE+RK AE+R RIKGRFAK Sbjct: 321 FSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAK 367
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.635e-8 Identity = 39/105 (37.14%), Postives = 50/105 (47.62%), Query Frame = -2 Query: 649 GHPEECAVVPDKHLGSSRTIP----------VSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 933 G P + + P+ LG + +P SD +Q D G ER++ + RYKEKR+TR F K IRYE RK+ AE R RIKGRF K Sbjct: 294 GSPWKTGIKPECMLGGNTCLPHVVGGYEKLMSSDGSVTRQQGRDGGGSDG------------EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVK 386
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 2.640e-8 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = -2 Query: 649 LNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 789 L+ ++R++ + RY+EK+K R+F+K IRY SRK AE R RIKGRFAK Sbjct: 281 LSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAK 327
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL16_ARATH (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2) HSP 1 Score: 57.7658 bits (138), Expect = 1.170e-7 Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = -2 Query: 649 RDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 774 R++ +SRY+EKR+TR F K IRYE RK+ AE R R+KGRF K Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 402
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2) HSP 1 Score: 57.3806 bits (137), Expect = 1.541e-7 Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = -2 Query: 646 QERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKV 780 Q R+ A RYKEK+ R F K IRY SRK RA++R R+KGRF K Sbjct: 305 QARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKA 349
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL6_ARATH (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2) HSP 1 Score: 57.3806 bits (137), Expect = 1.576e-7 Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = -2 Query: 649 RDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 774 R++ +SRY+EKR+TR F K IRYE RK+ AE R R+KGRF K Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 398 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 16
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018556 ID=g.arboreum_cottongen_reftransV1_0018556; Name=g.arboreum_cottongen_reftransV1_0018556; organism=Gossypium arboreum; type=contig; length=1594bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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