g.arboreum_cottongen_reftransV1_0018556, g.arboreum_cottongen_reftransV1_0018556 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0018556
Unique Name	g.arboreum_cottongen_reftransV1_0018556
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1594

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr6	chromosome	g.arboreum_cottongen_reftransV1_0018556:1..1564 . Chr6:32237047..32239472 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: F6HQ13_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01360 PE=4 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 2.348e-82
Identity = 170/350 (48.57%), Postives = 216/350 (61.71%), Query Frame = -2

Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKK----------------XXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGD---------------LQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKH--LGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS  NQLF+KH+RS+LCD CD SPASI C T+  V C NCDW  H  S SS H+RRP+EGF+G PSV EL++ VG EDLG+K                   +  G D+ + D L W+ P + + DDL+VS+  DH F+   V PLPKNR A CGQHK E++HQLR+LAK E    FD+ GD               +Q      SC ++   + FP YE+SA ++  D  E  +QV +P   L    +E  +VP KH  +G S +       G  +  + T T+ ALPKV+VHELNSQERDSAISRYKEK+KTRR++KHIRYESRK RAESR RIKGRFAK++H
Sbjct:   49 SCDREVHS-TNQLFTKHTRSRLCDVCDASPASILCSTDNLVLCQNCDWAKHGRSLSSAHDRRPLEGFSGQPSVTELLAFVGFEDLGKKSLFCGDESEVNEFLGCGVYESVGVDEEFSDFLVWDTPAVVNLDDLIVSTACDHNFQAMGVPPLPKNRGAPCGQHKAEIIHQLRQLAKIELSFDFDH-GDAKPPIGFQSHIPKQLIQKENECNSCDHEVEFV-FPTYEASAFQWCSDGSEAANQV-LPSVLLGSCADEKCLVPRKHSDIGGSVSHTNGSDEGKSECPVVTKTLPALPKVSVHELNSQERDSAISRYKEKKKTRRYEKHIRYESRKARAESRIRIKGRFAKMDH 394

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: V7D1I4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G203000g PE=4 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.510e-80
Identity = 160/328 (48.78%), Postives = 202/328 (61.59%), Query Frame = -2

Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS-SSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXX----------XXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS  NQLFSKH+R+ LCDACD SPA+I C T+ SV C NCDWE H  + S SLH RRP+EGFTGCPSV+EL+S+VG  DL +K                       DL  W+ P I + DDL+ SS S H F+  +V PLPKNR A CG+H+EE+L QLRELAKSEP+   D    +Q G + ++   D      P +E     +  ++VE   QV  P   LR + EE  V    ++G + T    D  GN    +++ T+   PK A  EL SQERDSA+ RYK+K+KTRR+DKHIRYESRKVRAESR R+KGRFAK+E 
Sbjct:   34 SCDREVHS-TNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWEKHNPALSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGLSDLFVWDAPSIVTIDDLICSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPL---DPEQSVQPGNLSSAFERDVEADIIPYHE-----WHRESVEPMYQVVPPDPSLRTYTEEILVKQSTYVGETHTF--VDKGGNLSISLNSETLPTTPKAAACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEQ 350

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: M1AT27_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011378 PE=4 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 6.755e-78
Identity = 164/340 (48.24%), Postives = 206/340 (60.59%), Query Frame = -2

Query:  634 QEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIP-------------------FPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQHQID-----TGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH*D 1581
            +E HS  NQLF+KH+R  LC+ CD SPASI C TE SV C NCDWESH     SLH RRP+EGF+GCPSV+EL+SI+G EDLG+K+         G+ D + W+ P + S DDL+ ++DS+H F+   V PLPKNRNA CG+HKEE+L QLREL+K EP     N+GD Q  TV T       P+                     P+ E SA  + GD  E  DQ F   S L         +  K L  +R   V D+ G    +       T T   +PKV   ELNSQER++A+SRYKEK+KTRR++KHIRYESRK RAE+RTRIKGRFAK+++ D
Sbjct:   49 REVHS-TNQLFTKHTRWLLCNLCDSSPASILCCTESSVLCQNCDWESHN-KQLSLHERRPLEGFSGCPSVSELLSILGFEDLGKKELLYGGDGSYGFSDWVIWDTPSVVSLDDLIANNDSEHNFQAIGVPPLPKNRNAACGKHKEEILSQLRELSKLEP-----NSGDDQDETVPTIGFQSMEPVQNCPLRFKGLGFMQNSDQHVVPSSEGSAFHWHGDTGEFADQGFS--SSLMD-----CFIETKCLLPNRDSDVCDASGGANEEQSHNPPTTETFQMVPKVVHRELNSQERETAVSRYKEKKKTRRYEKHIRYESRKARAETRTRIKGRFAKMDYRD 374

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A0B2R8H1_GLYSO (Zinc finger protein CONSTANS-LIKE 13 OS=Glycine soja GN=glysoja_038855 PE=4 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.730e-77
Identity = 161/330 (48.79%), Postives = 202/330 (61.21%), Query Frame = -2

Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS-SSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS----------WENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSS--RTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS  NQLFSKH+R+ LCDACD SPA+I C T+ SV C NCDWE H  + S SLH RRP+EGFTGCPSV+EL+SIVG  DL +K                           W++P   + DDL+ SS S H F+  +V PLPKNR A CGQHKEE+L QLRELAKSEP+   D    + +G + +    +     FP++E     +  ++ E   QV  P   +R + EE   +P KH  S+   T    D+ G     + + T+S  PK A  EL SQERDSA+ RYK+K+KTRRFDKHIRYESRKVRAESR R+KGRFAK+EH
Sbjct:   30 SCDREVHS-TNQLFSKHTRTLLCDACDHSPATILCSTDTSVLCQNCDWEKHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFSDLSKKSLLSSPQGSGADGIFGGEIEGLSDLFVWDSPSFVTLDDLISSSPSSHSFQAMEVPPLPKNRKAACGQHKEEILSQLRELAKSEPL---DLEPYVSSGNLSSGFEREPEADIFPSHE-----WHRESSEPMYQVVPPDPLMRTYTEE---IPFKHSTSAVGETQTYGDNGGKPSISLKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMEH 347

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: I1JQH3_SOYBN (CONSTANS-like zinc finger protein OS=Glycine max GN=COL15 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.730e-77
Identity = 161/330 (48.79%), Postives = 202/330 (61.21%), Query Frame = -2

Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS-SSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS----------WENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSS--RTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS  NQLFSKH+R+ LCDACD SPA+I C T+ SV C NCDWE H  + S SLH RRP+EGFTGCPSV+EL+SIVG  DL +K                           W++P   + DDL+ SS S H F+  +V PLPKNR A CGQHKEE+L QLRELAKSEP+   D    + +G + +    +     FP++E     +  ++ E   QV  P   +R + EE   +P KH  S+   T    D+ G     + + T+S  PK A  EL SQERDSA+ RYK+K+KTRRFDKHIRYESRKVRAESR R+KGRFAK+EH
Sbjct:   30 SCDREVHS-TNQLFSKHTRTLLCDACDHSPATILCSTDTSVLCQNCDWEKHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFSDLSKKSLLSSPQGSGADGIFGGEIEGLSDLFVWDSPSFVTLDDLISSSPSSHSFQAMEVPPLPKNRKAACGQHKEEILSQLRELAKSEPL---DLEPYVSSGNLSSGFEREPEADIFPSHE-----WHRESSEPMYQVVPPDPLMRTYTEE---IPFKHSTSAVGETQTYGDNGGKPSISLKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMEH 347

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: U7E1V5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0020s00320g PE=4 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.792e-77
Identity = 165/341 (48.39%), Postives = 201/341 (58.94%), Query Frame = -2

Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSS-LHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS---------WENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIP-----------FPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKH---LGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S   E HS  NQLFSKH+RS LCDAC  SP SIFC+TE SVFC NCDWE H  SS S  H RRPIEGFTGCPS NEL++I+G EDLG KK        DG+L             W++P +   D ++ S    + F+   V PLPKNRNA CGQHKEE+L QLREL + +P    D  G+      +   + D  P P           F +Y+ +   +  D  E  +QV    +    + EE   VPDK    +GS+    V D    +   +   T+ ALP V  HELNSQERDSAISRYKEK+KTRR+ KHIRYESRKVRAE RTRI+GRFAK++H
Sbjct:   33 SCDHEVHS-TNQLFSKHTRSLLCDACHASPVSIFCQTEHSVFCQNCDWERHSLSSLSSTHIRRPIEGFTGCPSGNELMTILGFEDLGLKKSLFFSEESDGFLGSELDDGCSDLFLWDSPAVCIDDLIVSSDSGSN-FQTLGVPPLPKNRNAACGQHKEEILCQLRELVRLKP----DPYGNADIDPANILQSLDADPQPPNLNTIGDPGAFTSYKENLPDWLADYGEAANQVLFLSTLPSSNFEESCAVPDKEFNIIGSASH--VHDDHAAEPQHLTIETLPALPNVVTHELNSQERDSAISRYKEKKKTRRYSKHIRYESRKVRAEGRTRIRGRFAKMDH 365

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: E9NZT6_PHAVU (CCT motif protein OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.230e-76
Identity = 162/362 (44.75%), Postives = 204/362 (56.35%), Query Frame = -2

Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS-SSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXX----------XXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESS----------------------------------ALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS  NQLFSKH+R+ LCDACD SPA+I C T+ SV C NCDWE H  + S SLH RRP+EGFTGCPSV+EL+S+VG  DL +K                       DL  W+ P I + DDL+ SS S H F+  +V PLPKNR A CG+H+EE+L QLRELAKSEP+   D    +Q G + ++   D      P +ES                                    L +  ++VE   QV  P   LR + EE  V    ++G + T    D  GN    +++ T+   PK A  EL SQERDSA+ RYK+K+KTRR+DKHIRYESRKVRAESR R+KGRFAK+E 
Sbjct:   34 SCDREVHS-TNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWEKHNPALSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGLSDLFVWDAPSIVTIDDLICSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPL---DPEQSVQPGNLSSAFERDVEADIIPYHESMLVLIHDNGSVHKINLGGSTILALILLKGFRWQILGLLWHRESVEPMYQVVPPDPSLRTYTEEILVKQSTYVGETHTF--VDKGGNLSISLNSETLPTTPKAAACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEQ 389

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A0B2SGT4_GLYSO (Zinc finger protein CONSTANS-LIKE 13 OS=Glycine soja GN=glysoja_002130 PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 8.677e-76
Identity = 160/333 (48.05%), Postives = 201/333 (60.36%), Query Frame = -2

Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS-SSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS-----------WENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKH----LGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS  NQLFSKH+R+ LCDACD SPA+I C T+ SV C NCDWE+H  + S SLH RRP+EGFTGCPSV+EL+SIVG  D+ +K                +           W+ P   + DDL+ SS S H F+   V PLPKNR A CGQHKEE+L QLRELAKSEP+   D    +Q+G +      D     FP++E     +  ++ E   QV  P   +  + EE   +P KH    +G + T    D+ G     + + T+S  PK A  EL SQERDSA+ RYK+K+KTRRFDKHIRYESRKVRAESR R+KGRFAK+ H
Sbjct:   31 SCDREVHS-TNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWENHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFSDISKKSLLFSPQGSVADGFFGASEIEGLSDMFVWDAPSFVTLDDLISSSPSSHSFQAMKVPPLPKNRKAACGQHKEEILSQLRELAKSEPL---DLEPYVQSGNLSLGFERDPEADIFPSHE-----WHRESSEPMHQVVPPDPSMGTYTEE---IPVKHSTSAVGENHTY--GDNEGKPSISLKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMGH 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: D0EP04_SOYBN (CONSTANS-like zinc finger protein OS=Glycine max GN=COL9 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 8.677e-76
Identity = 160/333 (48.05%), Postives = 201/333 (60.36%), Query Frame = -2

Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS-SSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS-----------WENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKH----LGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS  NQLFSKH+R+ LCDACD SPA+I C T+ SV C NCDWE+H  + S SLH RRP+EGFTGCPSV+EL+SIVG  D+ +K                +           W+ P   + DDL+ SS S H F+   V PLPKNR A CGQHKEE+L QLRELAKSEP+   D    +Q+G +      D     FP++E     +  ++ E   QV  P   +  + EE   +P KH    +G + T    D+ G     + + T+S  PK A  EL SQERDSA+ RYK+K+KTRRFDKHIRYESRKVRAESR R+KGRFAK+ H
Sbjct:   31 SCDREVHS-TNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWENHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFSDISKKSLLFSPQGSVADGFFGASEIEGLSDMFVWDAPSFVTLDDLISSSPSSHSFQAMKVPPLPKNRKAACGQHKEEILSQLRELAKSEPL---DLEPYVQSGNLSLGFERDPEADIFPSHE-----WHRESSEPMHQVVPPDPSMGTYTEE---IPVKHSTSAVGENHTY--GDNEGKPSISLKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMGH 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: K4CV33_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g074560.2 PE=4 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.958e-75
Identity = 159/342 (46.49%), Postives = 200/342 (58.48%), Query Frame = -2

Query:  634 QEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS-WENP-VIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIP-------------------FPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGN-----QQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH*D 1581
            +E HS  NQLF+KH+R  LC+ CD SPASI C TE SV C NCDWESH     SLH RRP+EGFTGCPSV+EL+SI+G EDLG+K+                 W+ P V++  D +  +++S H ++   V PLPKNRNA CG+HKEE+L QLREL+K EP     N+GD Q   V T+      P+                     P+ E SA  + GD  E  DQ F   S      E   ++PD      R   V D+ G        H   T T   +PKV   ELNSQER++A+SRYKEK+KTRR++KHIRYESRK RAE+RTRIKGRFAK+++ D
Sbjct:   41 REVHS-TNQLFTKHTRWLLCNLCDSSPASILCCTETSVLCQNCDWESHN-KLLSLHERRPLEGFTGCPSVSELLSILGFEDLGKKELLCGGDDGAYGFSDWVIWDAPSVVTLDDLIANNNESRHNYQAIGVPPLPKNRNAACGKHKEEILGQLRELSKLEP-----NSGDDQDENVPTTGFQSMEPVQNCPLRYKGSGFMQRSDQHVVPSSEGSAFHWHGDTGEFVDQGFSS-SLTDCFIETKCLLPD------RDSDVCDASGGGNEEQSHHPTTTETFQMVPKVVHRELNSQERETAVSRYKEKKKTRRYEKHIRYESRKARAETRTRIKGRFAKMDYRD 368

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: HD1_ORYSJ (Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.920e-9
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = -2

Query:  649 LNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 789
             +S +R++ + RY+EK+K R+F+K IRYE+RK  AE+R RIKGRFAK
Sbjct:  321 FSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAK 367

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.635e-8
Identity = 39/105 (37.14%), Postives = 50/105 (47.62%), Query Frame = -2

Query:  649 GHPEECAVVPDKHLGSSRTIP----------VSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 933
            G P +  + P+  LG +  +P           SD    +Q   D G                ER++ + RYKEKR+TR F K IRYE RK+ AE R RIKGRF K
Sbjct:  294 GSPWKTGIKPECMLGGNTCLPHVVGGYEKLMSSDGSVTRQQGRDGGGSDG------------EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVK 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.640e-8
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = -2

Query:  649 LNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 789
            L+ ++R++ + RY+EK+K R+F+K IRY SRK  AE R RIKGRFAK
Sbjct:  281 LSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAK 327

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL16_ARATH (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.170e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = -2

Query:  649 RDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 774
            R++ +SRY+EKR+TR F K IRYE RK+ AE R R+KGRF K
Sbjct:  361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 402

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.541e-7
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = -2

Query:  646 QERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKV 780
            Q R+ A  RYKEK+  R F K IRY SRK RA++R R+KGRF K 
Sbjct:  305 QARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKA 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL6_ARATH (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.576e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = -2

Query:  649 RDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 774
            R++ +SRY+EKR+TR F K IRYE RK+ AE R R+KGRF K
Sbjct:  357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 398

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
F6HQ13_VITVI	2.348e-82	48.57	Putative uncharacterized protein OS=Vitis vinifera...	[more]
V7D1I4_PHAVU	1.510e-80	48.78	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
M1AT27_SOLTU	6.755e-78	48.24	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
A0A0B2R8H1_GLYSO	1.730e-77	48.79	Zinc finger protein CONSTANS-LIKE 13 OS=Glycine so...	[more]
I1JQH3_SOYBN	1.730e-77	48.79	CONSTANS-like zinc finger protein OS=Glycine max G...	[more]
U7E1V5_POPTR	3.792e-77	48.39	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
E9NZT6_PHAVU	1.230e-76	44.75	CCT motif protein OS=Phaseolus vulgaris PE=4 SV=1	[more]
A0A0B2SGT4_GLYSO	8.677e-76	48.05	Zinc finger protein CONSTANS-LIKE 13 OS=Glycine so...	[more]
D0EP04_SOYBN	8.677e-76	48.05	CONSTANS-like zinc finger protein OS=Glycine max G...	[more]
K4CV33_SOLLC	2.958e-75	46.49	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 16


Match Name	E-value	Identity	Description
HD1_ORYSJ	3.920e-9	57.45	Zinc finger protein HD1 OS=Oryza sativa subsp. jap...	[more]
COL7_ARATH	1.635e-8	37.14	Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis...	[more]
COL1_ARATH	2.640e-8	57.45	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis...	[more]
COL16_ARATH	1.170e-7	61.90	Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsi...	[more]
COL12_ARATH	1.541e-7	57.78	Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsi...	[more]
COL6_ARATH	1.576e-7	61.90	Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 17..63 e-value: 6.6E-4 score: 29.0
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 19..63 e-value: 1.5E-7 score: 31.3
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 17..63 score: 10.509
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 272..314 e-value: 4.5E-17 score: 61.7
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 272..314 score: 15.12
None	No IPR available	PANTHER	PTHR31717:SF16	ZINC FINGER PROTEIN CONSTANS-LIKE 13	coord: 9..315
None	No IPR available	PANTHER	PTHR31717	FAMILY NOT NAMED	coord: 9..315

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0018556 ID=g.arboreum_cottongen_reftransV1_0018556; Name=g.arboreum_cottongen_reftransV1_0018556; organism=Gossypium arboreum; type=contig; length=1594bp
ACTGACAGCAGCATTACTAGTAGTACCACTGTGGGTCAAAACTTCCAGAA
ACAAGACCGCAATATTTCTCGTCATCCTAGACGTCACCACAGGGCAGCAA
TGGCTGTCAGTATCTTAGGCCAAGAAGGTAACTCGCATGTCCAATCGAAG
AAAGACCGGATTTTGTTTTATATGGTTGTTGGCGTCTTTGGTTTTGCATT
TGGCTCATAGCACACGCCATATTCAACATGAGTATTTAATGAACTTCCCA
ATGGTGTTAAATTTGTAGCCAAGCTGGTTGTGGAATCTCATTACAGTAAA
AAATGGAATATTCTCAACATAGAACTCAAATTTCACTAACCATCGTTTTA
TTTTGCATGACATGATTGCAAAAAGTCCAAGATTCCAAATAAGGGCTTTC
ACTGCTGTAGCCAATAATCAGCATTTCAATGCACAAACCATCAGCTTAAA
GGTTAAAAAATAGCCTACATGATGTAATTATAGGTATTACAATTCAATAT
TTTACAAGAAACCTTGCATCTTACTAAGATTTTAGCTTCAAAGGAACAAA
GAATGAACAAAGGAAAACATTATCTAGTTACAAAAATGATCCATGTTCAT
AGCAATTCCAGTCTCAAAAGTAGTTTACCAGTAATCTCAATGCTCCACCT
TCGCAAAACGTCCTTTAATTCTCGTCCTGCTTTCGGCTCTAACCTTTCTT
GATTCGTACCTGATGTGCTTATCGAATCTCCTTGTTTTCCTTTTCTCCTT
GTAGCGCGAGATCGCAGAGTCTCTCTCCTGGCTATTTAACTCGTGGACAG
CGACCTTTGGAAGTGCTGACACGGTTCCAGTATCAATTTGATGTTGTTGG
TTCCCAAGACTATCACTCACAGGTATAGTCCTACTTGAACCTAGATGTTT
ATCAGGAACCACAGCACATTCCTCAGGATGACCTCTTAATTCCGAGAAAG
GCACAAAAACTTGGTCGGTCATCTCAACGTTGTCGCCGAAGAACCGTAGT
GCGCTTGACTCATAAGCAGGAAATGGAATTGGAGCTGTATCATTTGTGCA
ACTTGTATGCACAGTTCCTGTCTGCAAATCACCAGTATTATCAAAGCTGA
GGATAGGTTCAGATTTTGCTAGTTCACGTAGTTGATGAAGTACTTCCTCT
TTATGTTGTCCACAATGAGCATTACGATTCTTGGGCAAAGGAAGAACATC
AGTTGGCTTAAACCCATGATCAGAATCACTCGAAACAAGCAAATCATCAA
AGCTAGAAATCACCGGATTTTCCCAGCTCAACAAATCCAACCACCCATCA
TCATATCCACAATCATCACCACCTTTCTTTTCACCCAAATCCTCAATCCC
AACAATACTCACCAACTCATTCACCGAAGGACACCCAGTAAACCCTTCTA
TTGGCCTCCTATTATGCAACGAAGACGACGAAAACTTGTGGCTTTCCCAA
TCACAGTTGGAGCAAAACACCGATTGCTCTGTTTCGCAAAAGATGGAAGC
AGGGGAACCATCACAAGCGTCACAGAGCTGTGACCGAGAGTGCTTAGAGA
ATAGTTGGTTAGCCAAGCTATGTTTTTCTTGTGACAGGGAAGTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000315	Znf_B-box
IPR010402	CCT_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure

Search form

g.arboreum_cottongen_reftransV1_0018556, g.arboreum_cottongen_reftransV1_0018556 (contig) Gossypium arboreum

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