g.arboreum_cottongen_reftransV1_0021779, g.arboreum_cottongen_reftransV1_0021779 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021779
Unique Nameg.arboreum_cottongen_reftransV1_0021779
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0021779:1..382 .
Chr6:50549449..50549984 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: Q8L7B1_ARATH (Putative uncharacterized protein At2g35330 OS=Arabidopsis thaliana GN=At2g35330 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.499e-14
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 2 
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KH+R  R+TRSVK E DPCCLLD++++SKSI+ES +K L YH G+ DS    N + +        ++GWGYCTEE+LE+ILLK+LE+LYNEAI+KL+  GYDEDVAL+
Sbjct:   28 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALSKSIVESSLKHLVYHPGLLDSCPESNPSGSFED-----NNGWGYCTEEQLEDILLKHLEYLYNEAISKLVGSGYDEDVALR 137
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: K7KPL9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.623e-14
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 2 
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KHIR+ RR RSVK ++D C   DK +ISKSI ESG+KP  YHL +NDS+QSPN NPN        + GWGYCTEE+LEEILLKNLEF+YNEA++KL++LGYD DVA+K
Sbjct:    1 MGCTMREKHIRANRRPRSVKPDSDSC---DKDAISKSIAESGLKPFKYHLDLNDSSQSPNSNPNVE------ETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDGDVAVK 106
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: O82304_ARATH (Putative uncharacterized protein At2g35330 OS=Arabidopsis thaliana GN=At2g35330 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.749e-14
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 2 
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KH+R  R+TRSVK E DPCCLLD++++SKSI+ES +K L YH G+ DS    N + +        ++GWGYCTEE+LE+ILLK+LE+LYNEAI+KL+  GYDEDVAL+
Sbjct:    1 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALSKSIVESSLKHLVYHPGLLDSCPESNPSGSFED-----NNGWGYCTEEQLEDILLKHLEYLYNEAISKLVGSGYDEDVALR 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: F4IJV3_ARATH (RING-finger domain-containing protein OS=Arabidopsis thaliana GN=At2g35330 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.749e-14
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 2 
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KH+R  R+TRSVK E DPCCLLD++++SKSI+ES +K L YH G+ DS    N + +        ++GWGYCTEE+LE+ILLK+LE+LYNEAI+KL+  GYDEDVAL+
Sbjct:    1 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALSKSIVESSLKHLVYHPGLLDSCPESNPSGSFED-----NNGWGYCTEEQLEDILLKHLEYLYNEAISKLVGSGYDEDVALR 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: V4LYR8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010162mg PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.265e-13
Identity = 67/115 (58.26%), Postives = 90/115 (78.26%), Query Frame = 2 
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KH+R  R+TRSVK E DPCCLLD++++ KSI+ES +K L YH G+ DS   PN + N+       ++GWGYCTEE+LE+ILLK+LE++Y EAI+KL+ LGYDED+AL+
Sbjct:    1 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALPKSIVESSLKHLVYHPGLLDSGPDPNPSENSE------ENGWGYCTEEQLEDILLKHLEYIYYEAISKLVGLGYDEDLALR 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy Swiss-Prot
Match: MIP1_ARATH (MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 7.140e-7
Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 2 
Query:   41 MGCT-RDKHIRSARRTRSVKHETDP-CCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KH++  RR ++    +DP  C ++K ++S+SI+E+    L YH G+ DS         N+   N  ++ W YCTEE LEEILLK+LEFLYN+A++KL+ LGY+E VALK
Sbjct:    1 MGCTVREKHVKPTRRIKAAAFRSDPPLCWVEKIAMSQSIVEN----LVYHPGLTDSGS----VNLNSVTENPEENFWAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALK 108
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
Q8L7B1_ARATH1.499e-1459.13Putative uncharacterized protein At2g35330 OS=Arab... [more]
K7KPL9_SOYBN1.623e-1465.22Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
O82304_ARATH2.749e-1459.13Putative uncharacterized protein At2g35330 OS=Arab... [more]
F4IJV3_ARATH2.749e-1459.13RING-finger domain-containing protein OS=Arabidops... [more]
V4LYR8_EUTSA1.265e-1358.26Uncharacterized protein OS=Eutrema salsugineum GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MIP1_ARATH7.140e-747.41MND1-interacting protein 1 OS=Arabidopsis thaliana... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10044:SF133MND1-INTERACTING PROTEIN 1coord: 1..114
NoneNo IPR availablePANTHERPTHR10044INHIBITOR OF APOPTOSIScoord: 1..114

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021779 ID=g.arboreum_cottongen_reftransV1_0021779; Name=g.arboreum_cottongen_reftransV1_0021779; organism=Gossypium arboreum; type=contig; length=382bp
AACCCATATTCACCTAAATCTCGGGAAAAAACACAAACAGATGGGTTGCA
CTAGAGACAAGCATATACGGTCGGCCCGAAGGACCCGATCGGTGAAACAC
GAAACCGATCCTTGCTGTCTTCTTGACAAATCTTCGATATCCAAATCCAT
ACTTGAATCGGGTATTAAACCCTTGAGTTACCATTTGGGTGTAAATGATT
CGACCCAAAGCCCTAATCTTAACCCTAATAACAACGCCAATGCTAATTTT
AATGATCATGGTTGGGGGTATTGCACTGAGGAAGAATTAGAGGAAATTTT
GTTGAAAAACCTGGAATTTTTGTACAATGAAGCGATAACTAAGCTTATAT
CGTTAGGTTACGATGAGGATGTTGCATTAAAG
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