g.arboreum_cottongen_reftransV1_0010677, g.arboreum_cottongen_reftransV1_0010677 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: A0A068U1Q2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00039832001 PE=4 SV=1) HSP 1 Score: 439.113 bits (1128), Expect = 1.224e-147 Identity = 229/287 (79.79%), Postives = 248/287 (86.41%), Query Frame = -3 Query: 151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011 TNDKTPA+YSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQC+RLYDSSV GFELDAS I QELGGI TAMER++A+ QELMS KDML NTEVAVRSFMMLRPRF+HSN G A++ATAPSQ + T+A VPVFDFY GLP+KPSPFLQ TVARFEKY+ ECRQWIEELEQLLLL++DRNS++ +SSLLQSLPKVM+NVH FFVHVAAK ESIHQYIESMKTAYLAD R RGD NDPFLEADRRETAK EAAA+RVHPTLHLPA SQP TQV Sbjct: 83 TNDKTPATYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCSRLYDSSVFIGGFELDASRIFQELGGICTAMERERAICQELMSVAKDMLHNTEVAVRSFMMLRPRFLHSNVGAATSATAPSQATAVAQASSNQAAATSA--VPVFDFYSGLPRKPSPFLQQTVARFEKYIAECRQWIEELEQLLLLDADRNSLDSSSSLLQSLPKVMANVHAFFVHVAAKAESIHQYIESMKTAYLADQRRRGDGNDPFLEADRRETAKLEAAARRVHPTLHLPAVSQPSTQV 367
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: D0VEB0_TOBAC (Putative uncharacterized protein (Fragment) OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 428.713 bits (1101), Expect = 2.114e-143 Identity = 227/287 (79.09%), Postives = 252/287 (87.80%), Query Frame = -3 Query: 151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011 TNDKTPA+YSTKWADLHPDSQK LLQIEERILEYRD+SQRLDQC+RLYDSSV+N+GFE+DAS +QELGG+ST+MERQKA+LQELM VKDML NTEVAVRSFMMLRPRF+ + A++ATAPSQ GAT + Q + PVFDFY G+PKKP+PFLQ TVARFEKYL ECRQW+EELEQL+LL+SDRNS+N +SSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLAD R RGD +DPFLEADRRETAK EAAA+RVHPTLHLPA SQP TQV Sbjct: 179 TNDKTPATYSTKWADLHPDSQKLLLQIEERILEYRDKSQRLDQCSRLYDSSVANDGFEVDASRSIQELGGVSTSMERQKAILQELMVVVKDMLHNTEVAVRSFMMLRPRFLRQSAPAAASATAPSQASGATVAQTASTQAHSTPNAPVFDFYRGIPKKPTPFLQQTVARFEKYLLECRQWVEELEQLMLLDSDRNSMNSSSSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADQRRRGDGSDPFLEADRRETAKLEAAARRVHPTLHLPAISQPSTQV 465 HSP 2 Score: 154.836 bits (390), Expect = 9.947e-39 Identity = 77/102 (75.49%), Postives = 91/102 (89.22%), Query Frame = -3 Query: 625 EERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPG 930 EERILEYRD+SQRLDQC+RLYDSSV+N+GFE+DAS +QELGG+ST+MERQKA+LQELM VKDML NTEVAVRSFMMLRPRF+ + A++ATAP Q+PG Sbjct: 1 EERILEYRDKSQRLDQCSRLYDSSVANDGFEVDASRSIQELGGVSTSMERQKAILQELMVVVKDMLHNTEVAVRSFMMLRPRFLRQSAPAAASATAPFQIPG 102
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: V4MAI4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025060mg PE=4 SV=1) HSP 1 Score: 424.091 bits (1089), Expect = 4.688e-142 Identity = 215/284 (75.70%), Postives = 237/284 (83.45%), Query Frame = -3 Query: 169 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASN-ATAPSQVPGATTTPGSG--VQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANS 1011 TNDK PA+YSTKWADLHPDSQK LLQIEE+ILEYR ESQRLDQC+RLYDSSVS+EGFE DAS IVQELGGI+T M+RQKA+L ELM KDMLRN E+AVRSFMML+PRF HS G+ N + PSQ GA P S Q T S+V V DFY G+PKKP+ FLQ TVARFEKYLGECRQW+EELEQLL L+SD+ N +SLL+SLPKVMSNVHDFFVHVAAKVE+IHQYIESM+TAYLAD R RG+ NDPFLEADRRETAKQEAAAKRVHPTLHLPA S Sbjct: 75 TNDKAPANYSTKWADLHPDSQKLLLQIEEKILEYRSESQRLDQCSRLYDSSVSSEGFEFDASRIVQELGGINTTMDRQKAVLHELMVVAKDMLRNAEIAVRSFMMLQPRFPHSKPVGSVNGGSQPSQTQGANPAPASSGQQQQTITSIVQVSDFYRGIPKKPTAFLQQTVARFEKYLGECRQWVEELEQLLALDSDK--YNRHASLLESLPKVMSNVHDFFVHVAAKVENIHQYIESMRTAYLADQRRRGECNDPFLEADRRETAKQEAAAKRVHPTLHLPATS 356
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: S8CTA1_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_04692 PE=4 SV=1) HSP 1 Score: 416.001 bits (1068), Expect = 2.368e-139 Identity = 211/286 (73.78%), Postives = 236/286 (82.52%), Query Frame = -3 Query: 154 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQ 1011 TNDK PASY TKWADLHPDSQK LLQ+EE+I+EYRDESQRLDQC+RLYDSS+ GFEL AS +VQELGGI AMERQK L+EL+S ++DMLR+TE+AVRSF+MLRPRF+H N A + T PSQ T T S P A S+VP+ DFY GLPKKPSPFLQ TVARF+K L ECRQ +EELEQLL+L S+ NS +SSL QSLPKVM+NVHDFFVHVAAKVESIHQYIESMKTAYLAD R RGD NDPFLEADRRETAKQEAAA+R+HPTLHLPA SQP Q Sbjct: 38 TNDKAPASYGTKWADLHPDSQKCLLQVEEKIMEYRDESQRLDQCSRLYDSSIGTNGFELSASSMVQELGGIGIAMERQKVTLKELVSVIRDMLRHTELAVRSFVMLRPRFIHQNKLAAGSPTKPSQQLLVTQT--SSSPPAANSIVPILDFYSGLPKKPSPFLQQTVARFDKDLSECRQRVEELEQLLVLESE-NSYGRSSSLFQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKTAYLADQRGRGDCNDPFLEADRRETAKQEAAARRIHPTLHLPAVSQPTGQ 320
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: W6JLZ4_NICBE (Nuclear pore complex protein Nup58a OS=Nicotiana benthamiana GN=NbNup58a PE=2 SV=1) HSP 1 Score: 418.313 bits (1074), Expect = 4.222e-138 Identity = 234/322 (72.67%), Postives = 258/322 (80.12%), Query Frame = -3 Query: 151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGAT----------TTPGSGV---------------QPTAASMV----------PVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011 TNDKTPA+YSTKWADLHPDSQK LLQIEERILEYRDESQRLDQC+RLYDSSV+N+GFELDAS +QELGG+ST+MERQKA+LQELM VKD+LRNTEV VRSFMMLRPRF+ + A++ATAPSQ GAT +TP + V Q T A + PVFDFY G+PKKPSPFLQ TVARFEKYL ECRQW+EELEQL+LL+SDRNS+N +SSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLAD R RGD +DPFLEADRRETAK EAAA+RVHPTLHLPA SQP TQV Sbjct: 149 TNDKTPATYSTKWADLHPDSQKLLLQIEERILEYRDESQRLDQCSRLYDSSVANDGFELDASRSIQELGGVSTSMERQKAILQELMVVVKDILRNTEVVVRSFMMLRPRFLRQSAPAAASATAPSQASGATVAQTASTQAHSTPNAPVFDFYRGIPKKPSLFLQQTVAQIASSQAHSTPNAPVFDFYRGVPKKPSPFLQQTVARFEKYLLECRQWVEELEQLMLLDSDRNSMNSSSSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADQRRRGDGSDPFLEADRRETAKLEAAARRVHPTLHLPAISQPSTQV 470
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Match: NUP58_ARATH (Nuclear pore complex protein NUP58 OS=Arabidopsis thaliana GN=NUP58 PE=1 SV=1) HSP 1 Score: 411.379 bits (1056), Expect = 1.492e-138 Identity = 215/293 (73.38%), Postives = 239/293 (81.57%), Query Frame = -3 Query: 151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGA--SNATAPSQVPGATTTPG-SGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPA---NSQPPTQV 1011 TNDK PA+YSTKWADLHPDSQK LLQIEE+ILE+R ESQRLDQC+RLYDSSVS+EGFE DAS IVQELGGI+TAM+RQKA+L ELM KDMLRN E+AVRSFMML+PRF H GG S + PSQ G P SG Q + V V DFY G+PKKP+ FL TV RFEKYL ECRQW+EELEQLL L+SD+ S HA SLL+SLPKVMSNVHDFFVHVAAKVESIHQYIESM+T+YLAD R RG+ +DPFLEADRRETAKQEAAAKRVHPTLHLPA ++QP TQV Sbjct: 97 TNDKAPANYSTKWADLHPDSQKLLLQIEEKILEHRSESQRLDQCSRLYDSSVSSEGFEFDASRIVQELGGINTAMDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNPAPASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALDSDKYS-RHA-SLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHDPFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQV 387
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Match: PERA_ALOVR (Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 6.282e-9 Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = -3 Query: 289 KVMSNVHDFFVHVAAKVESIHQYIESMKTAYLA 387 +VMSNVHDFFVHVAAKVESIHQYIESM+ L+ Sbjct: 79 RVMSNVHDFFVHVAAKVESIHQYIESMRYGSLS 111 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010677 ID=g.arboreum_cottongen_reftransV1_0010677; Name=g.arboreum_cottongen_reftransV1_0010677; organism=Gossypium arboreum; type=contig; length=1094bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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