g.arboreum_cottongen_reftransV1_0019423, g.arboreum_cottongen_reftransV1_0019423 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: A0A067KKA5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10826 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.078e-47 Identity = 127/310 (40.97%), Postives = 162/310 (52.26%), Query Frame = 3 Query: 21 MGKESELWDDSALIDAFDNAMSKYKKMHGKKNSEANVSVSVHQTGDEAIKPRDAGENSSSRANTGMEMEAAKDVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGKISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSMTTKASIXXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKR 950 MGKE ELWDDSALI AFD+A+ +YKKMHGKK+ + ++ S +A + RDA E ++ + G V ENH V D + + DYNQLL +YY+VE+KRQ ILQQL GS++YQ+S SS A SC CCPY CSL GT S+ G + P ID DIV+TAMGAAE+AISS+ T + +E ++ K EE++ QST+ ETDL+V+LNAWYSAGFYTGKYL EQSI K+ Sbjct: 1 MGKEGELWDDSALIKAFDDAVCQYKKMHGKKSKDTSIDASAITNQTQAHETRDADEKTNVASELG-----------VDENHCV------------------DYSSSSQQQVQAVTESDYNQLLAEYYDVEEKRQRILQQL---GSYDYQHSQHMSSVAC----SC--------------------CCPYVSH-----------CSLGGT-CPYYSSAVEGPTKHAP-PNLIDVDIVQTAMGAAERAISSINT-------LEKEKEKGKGSEEKVAQSTNSETDLSVVLNAWYSAGFYTGKYLTEQSIMKK 234
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: A0A068UTR6_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_59 OS=Coffea canephora GN=GSCOC_T00034119001 PE=4 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 4.215e-47 Identity = 124/311 (39.87%), Postives = 167/311 (53.70%), Query Frame = 3 Query: 27 KESELWDDSALIDAFDNAMSKYKKMHGKKNSEANVSVSVHQTGDEAIKPRDAGENSSSRANTGMEMEAAKDVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGKISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSMTTKASI---XXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKR 950 K+ ELWDDSALI+AF++A+SKYKKMH + + VS + A + + +++ +N+ E E +V VKE+ ++ + PE ++ SST + + G Y + Q + YNQL+N+YYE+ED+RQ ILQQL QFG WNY SG T+ SQE TSQ A+ TV S CPY CQS CTS PC G G N A A E+A+SS+ +A + K+ + + +STS ETDLTV+LNAWYSAGFYTGKYL EQS A+ Sbjct: 5 KQDELWDDSALINAFNDAISKYKKMHIQGSQ-----VSSADGQEHAGRVDEISDDNKVPSNSAAETEENGNVPTVKESSFLESEAPEDHVVSSTGQGIHQEPVG---YLNLQTTEHYNQLVNKYYELEDQRQKILQQLNQFGYWNYD-SGL---------TASVSQEPETSTSQ-AYPTVSSSFCPYGCQSWVAPCTSVPCYFSGGACAG------NSCNA-----------------SAKEQALSSLKEQACANCDASVNEGKEKQSQKNFCHLEKSTSSETDLTVVLNAWYSAGFYTGKYLTEQSSARH 273
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: I1J4R2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 3.571e-45 Identity = 105/244 (43.03%), Postives = 145/244 (59.43%), Query Frame = 3 Query: 237 DVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGK----ISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSMTTKASIXXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKRRQ 956 ++ ++ENH + Q + +DS++ +Q+ Q+G Y+ +Q DYNQL+ QYYE+E+KR IL+ L Q+G WNYQ SS+ + Q+Y + Q + +C+CCP Q L CTS P CSL G+SVGK +S E + M++ P D +I K AMGAAEKA+S++ T S + NVNE + E++N S ETDL +LNAWYSAGFYTGKYL EQSI RQ Sbjct: 50 NLSKLEENHQTESQVDQPCLDSTSGQDIQNAQNG---YAYAQGGDDYNQLVVQYYELEEKRAKILEHLNQYGGWNYQNVAADSSSGVPYSN---FQDYSMAAYQVSDPNAVCTCCPCYSQCLPAPCTSVPGCSLGGSSVGKQCNDLSVEKDHKMSF----PCEDGEIHKMAMGAAEKALSTIRTTISGDFNVNEGKERNNSEPEKINGS---ETDLAAVLNAWYSAGFYTGKYLAEQSIQNGRQ 280
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: K4CN06_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g076430.2 PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 6.168e-45 Identity = 122/317 (38.49%), Postives = 167/317 (52.68%), Query Frame = 3 Query: 21 MGKESELWDDSALIDAFDNAMSKYKKMHG--KKNSEANVSVSVHQTGDEAIKPR-DAGENSSSRANTGMEMEAAKDVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGKISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSM---TTKASIXXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKRR 953 MG E++LWDDSAL++AF++A+SKYK MH K S +V+ G +K + + G+NS +T EM A + PVKEN + + P+ + + L Q+ Q + SQ+ +DYNQLL +YYE+ED+RQ ILQQL QFG W Q SG ASQE+ S + T CPY CQS + CT+ PCC + P + +V TA AAEKA+SS+ + AS+N E + + ++ ETDL+ +LNAWYSAG YTGKYL EQS K+R Sbjct: 1 MG-ENDLWDDSALVNAFNDAVSKYKIMHSLEAKVSSKEENVTAPDDGSNELKSKGEGGDNSKLAPDTTTEMGDASSLPPVKENSSFEAVPPQNH---TGQLNEQNTQYKAIEKCSSQSLEDYNQLLYKYYELEDQRQKILQQLNQFGIWGDQNSGS------------ASQEHQAYASHNLNPTESSFYCPYGCQSWVSPCTASPCCLGVNEDDKPCDASIRCVQEKKSSPQ--NPSLVDTAKEAAEKALSSLKQASNTASLNSFAKEGKQIEMMNPVAAEKTGGLETDLSEVLNAWYSAGLYTGKYLSEQS--KKR 297
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: A0A0B2PBE2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024210 PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 6.477e-45 Identity = 105/244 (43.03%), Postives = 145/244 (59.43%), Query Frame = 3 Query: 237 DVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGK----ISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSMTTKASIXXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKRRQ 956 ++ ++ENH + Q + +DS++ +Q+ Q+G Y+ +Q DYNQL+ QYYE+E+KR IL+ L Q+G WNYQ SS+ + Q+Y + Q + +C+CCP Q L CTS P CSL G+SVGK +S E + M++ P D +I K AMGAAEKA+S++ T S + NVNE + E++N S ETDL +LNAWYSAGFYTGKYL EQSI RQ Sbjct: 54 NLSKLEENHQTESQVDQPCLDSTSGQDIQNAQNG---YAYAQGGDDYNQLVVQYYELEEKRAKILEHLNQYGGWNYQNVAADSSSGVPYSN---FQDYSMAAYQVSDPNAVCTCCPCYSQCLPAPCTSVPGCSLGGSSVGKQCNDLSVEKDHKMSF----PCEDGEIHKMAMGAAEKALSTIRTTISGDFNVNEGKERNNSEPEKINGS---ETDLAAVLNAWYSAGFYTGKYLAEQSIQNGRQ 284 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019423 ID=g.arboreum_cottongen_reftransV1_0019423; Name=g.arboreum_cottongen_reftransV1_0019423; organism=Gossypium arboreum; type=contig; length=1396bpback to top |