g.arboreum_cottongen_reftransV1_0019423, g.arboreum_cottongen_reftransV1_0019423 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019423
Unique Nameg.arboreum_cottongen_reftransV1_0019423
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0019423:1..1396 .
Chr6:50212770..50215307 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: A0A067KKA5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10826 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.078e-47
Identity = 127/310 (40.97%), Postives = 162/310 (52.26%), Query Frame = 3
Query:   21 MGKESELWDDSALIDAFDNAMSKYKKMHGKKNSEANVSVSVHQTGDEAIKPRDAGENSSSRANTGMEMEAAKDVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGKISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSMTTKASIXXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKR 950
            MGKE ELWDDSALI AFD+A+ +YKKMHGKK+ + ++  S      +A + RDA E ++  +  G           V ENH V                  D    +     +    DYNQLL +YY+VE+KRQ ILQQL   GS++YQ+S   SS A     SC                    CCPY              CSL GT     S+   G   +   P  ID DIV+TAMGAAE+AISS+ T       + +E ++ K  EE++ QST+ ETDL+V+LNAWYSAGFYTGKYL EQSI K+
Sbjct:    1 MGKEGELWDDSALIKAFDDAVCQYKKMHGKKSKDTSIDASAITNQTQAHETRDADEKTNVASELG-----------VDENHCV------------------DYSSSSQQQVQAVTESDYNQLLAEYYDVEEKRQRILQQL---GSYDYQHSQHMSSVAC----SC--------------------CCPYVSH-----------CSLGGT-CPYYSSAVEGPTKHAP-PNLIDVDIVQTAMGAAERAISSINT-------LEKEKEKGKGSEEKVAQSTNSETDLSVVLNAWYSAGFYTGKYLTEQSIMKK 234          
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: A0A068UTR6_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_59 OS=Coffea canephora GN=GSCOC_T00034119001 PE=4 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.215e-47
Identity = 124/311 (39.87%), Postives = 167/311 (53.70%), Query Frame = 3
Query:   27 KESELWDDSALIDAFDNAMSKYKKMHGKKNSEANVSVSVHQTGDEAIKPRDAGENSSSRANTGMEMEAAKDVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGKISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSMTTKASI---XXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKR 950
            K+ ELWDDSALI+AF++A+SKYKKMH + +      VS     + A +  +  +++   +N+  E E   +V  VKE+  ++ + PE ++ SST   +  +  G   Y + Q  + YNQL+N+YYE+ED+RQ ILQQL QFG WNY  SG          T+  SQE    TSQ A+ TV  S CPY CQS    CTS PC    G   G      N   A                  A E+A+SS+  +A           + K+ +     + +STS ETDLTV+LNAWYSAGFYTGKYL EQS A+ 
Sbjct:    5 KQDELWDDSALINAFNDAISKYKKMHIQGSQ-----VSSADGQEHAGRVDEISDDNKVPSNSAAETEENGNVPTVKESSFLESEAPEDHVVSSTGQGIHQEPVG---YLNLQTTEHYNQLVNKYYELEDQRQKILQQLNQFGYWNYD-SGL---------TASVSQEPETSTSQ-AYPTVSSSFCPYGCQSWVAPCTSVPCYFSGGACAG------NSCNA-----------------SAKEQALSSLKEQACANCDASVNEGKEKQSQKNFCHLEKSTSSETDLTVVLNAWYSAGFYTGKYLTEQSSARH 273          
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: I1J4R2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.571e-45
Identity = 105/244 (43.03%), Postives = 145/244 (59.43%), Query Frame = 3
Query:  237 DVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGK----ISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSMTTKASIXXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKRRQ 956
            ++  ++ENH  + Q  +  +DS++   +Q+ Q+G   Y+ +Q   DYNQL+ QYYE+E+KR  IL+ L Q+G WNYQ     SS+   +      Q+Y +   Q +    +C+CCP   Q L   CTS P CSL G+SVGK    +S E +  M++    P  D +I K AMGAAEKA+S++ T  S + NVNE  +      E++N S   ETDL  +LNAWYSAGFYTGKYL EQSI   RQ
Sbjct:   50 NLSKLEENHQTESQVDQPCLDSTSGQDIQNAQNG---YAYAQGGDDYNQLVVQYYELEEKRAKILEHLNQYGGWNYQNVAADSSSGVPYSN---FQDYSMAAYQVSDPNAVCTCCPCYSQCLPAPCTSVPGCSLGGSSVGKQCNDLSVEKDHKMSF----PCEDGEIHKMAMGAAEKALSTIRTTISGDFNVNEGKERNNSEPEKINGS---ETDLAAVLNAWYSAGFYTGKYLAEQSIQNGRQ 280          
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: K4CN06_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g076430.2 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.168e-45
Identity = 122/317 (38.49%), Postives = 167/317 (52.68%), Query Frame = 3
Query:   21 MGKESELWDDSALIDAFDNAMSKYKKMHG--KKNSEANVSVSVHQTGDEAIKPR-DAGENSSSRANTGMEMEAAKDVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGKISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSM---TTKASIXXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKRR 953
            MG E++LWDDSAL++AF++A+SKYK MH    K S    +V+    G   +K + + G+NS    +T  EM  A  + PVKEN + +   P+ +   +  L  Q+ Q   +    SQ+ +DYNQLL +YYE+ED+RQ ILQQL QFG W  Q SG             ASQE+    S   + T     CPY CQS  + CT+ PCC                     + P   +  +V TA  AAEKA+SS+   +  AS+N    E  + +        ++   ETDL+ +LNAWYSAG YTGKYL EQS  K+R
Sbjct:    1 MG-ENDLWDDSALVNAFNDAVSKYKIMHSLEAKVSSKEENVTAPDDGSNELKSKGEGGDNSKLAPDTTTEMGDASSLPPVKENSSFEAVPPQNH---TGQLNEQNTQYKAIEKCSSQSLEDYNQLLYKYYELEDQRQKILQQLNQFGIWGDQNSGS------------ASQEHQAYASHNLNPTESSFYCPYGCQSWVSPCTASPCCLGVNEDDKPCDASIRCVQEKKSSPQ--NPSLVDTAKEAAEKALSSLKQASNTASLNSFAKEGKQIEMMNPVAAEKTGGLETDLSEVLNAWYSAGLYTGKYLSEQS--KKR 297          
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Match: A0A0B2PBE2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024210 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.477e-45
Identity = 105/244 (43.03%), Postives = 145/244 (59.43%), Query Frame = 3
Query:  237 DVEPVKENHTVKLQTPETYIDSSTSLPMQDKQDGNMAYSDSQAAQDYNQLLNQYYEVEDKRQMILQQLQQFGSWNYQYSGEGSSTAAQWGTSCASQEYPIPTSQAAHSTVICSCCPYACQSLATTCTSYPCCSLAGTSVGK----ISTEPNGAMAYGNLPPFIDSDIVKTAMGAAEKAISSMTTKASIXXXXXXXXXXXXXXXXXXXQSTSCETDLTVLLNAWYSAGFYTGKYLVEQSIAKRRQ 956
            ++  ++ENH  + Q  +  +DS++   +Q+ Q+G   Y+ +Q   DYNQL+ QYYE+E+KR  IL+ L Q+G WNYQ     SS+   +      Q+Y +   Q +    +C+CCP   Q L   CTS P CSL G+SVGK    +S E +  M++    P  D +I K AMGAAEKA+S++ T  S + NVNE  +      E++N S   ETDL  +LNAWYSAGFYTGKYL EQSI   RQ
Sbjct:   54 NLSKLEENHQTESQVDQPCLDSTSGQDIQNAQNG---YAYAQGGDDYNQLVVQYYELEEKRAKILEHLNQYGGWNYQNVAADSSSGVPYSN---FQDYSMAAYQVSDPNAVCTCCPCYSQCLPAPCTSVPGCSLGGSSVGKQCNDLSVEKDHKMSF----PCEDGEIHKMAMGAAEKALSTIRTTISGDFNVNEGKERNNSEPEKINGS---ETDLAAVLNAWYSAGFYTGKYLAEQSIQNGRQ 284          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067KKA5_JATCU2.078e-4740.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A068UTR6_COFCA4.215e-4739.87Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
I1J4R2_SOYBN3.571e-4543.03Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K4CN06_SOLLC6.168e-4538.49Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A0B2PBE2_GLYSO6.477e-4543.03Uncharacterized protein OS=Glycine soja GN=glysoja... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0019423 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR39267:SF1SUBFAMILY NOT NAMEDcoord: 2..312
NoneNo IPR availablePANTHERPTHR39267FAMILY NOT NAMEDcoord: 2..312

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019423 ID=g.arboreum_cottongen_reftransV1_0019423; Name=g.arboreum_cottongen_reftransV1_0019423; organism=Gossypium arboreum; type=contig; length=1396bp
GGAAACCTTCGAACGAAAACATGGGCAAAGAAAGTGAGCTTTGGGACGAC
TCCGCCCTCATCGATGCCTTCGACAACGCCATGTCCAAATATAAGAAAAT
GCATGGAAAGAAAAACAGTGAGGCCAATGTCTCTGTTTCTGTTCATCAAA
CCGGTGATGAGGCCATAAAACCCAGGGATGCAGGAGAGAACAGCAGTTCC
AGAGCTAATACTGGGATGGAAATGGAGGCGGCGAAGGATGTTGAACCAGT
TAAAGAAAATCATACTGTAAAGTTACAGACTCCTGAGACTTACATAGATT
CATCAACTAGTCTGCCAATGCAGGATAAGCAAGATGGGAATATGGCCTAT
TCGGATTCGCAAGCTGCGCAGGATTATAACCAATTACTCAACCAGTATTA
TGAGGTTGAAGACAAGAGGCAAATGATTCTGCAGCAGCTTCAGCAATTTG
GTAGTTGGAATTATCAATACTCGGGTGAGGGTTCTAGCACAGCTGCACAG
TGGGGTACCTCCTGTGCTTCTCAGGAGTATCCAATTCCTACAAGTCAAGC
TGCACACTCCACTGTCATCTGTTCGTGTTGCCCATATGCATGTCAATCTC
TGGCAACAACATGCACATCATATCCTTGCTGTTCTTTGGCTGGGACATCT
GTTGGTAAAATTAGCACTGAACCAAACGGTGCAATGGCTTATGGAAACTT
ACCACCTTTCATAGATTCCGACATTGTTAAAACAGCTATGGGAGCTGCAG
AAAAAGCTATATCCTCTATGACAACAAAAGCTTCTATTAATCCTAATGTA
AATGAAGAGAACAAGGAGAAGAAAGATGGTGAAGAGGAAATGAATCAAAG
TACTAGTTGTGAAACTGATCTCACTGTACTTTTAAATGCATGGTATTCTG
CCGGCTTCTATACAGGAAAGTACCTTGTGGAGCAGAGTATTGCTAAGAGA
AGGCAGTGATAAGCAATTCTTATTATGCAATGTGGACTGCTACAGGGCGA
GATCCCAGATATCAGTCGTCCTGCACATTGCATGGAATCCCTACATTTAT
TTGGTAGGCAAGAAAGGAACGTGAGAATGTATGACCAAGATACGAAGTGT
AGTAGACATGCTCGGATTTTGCAACAAATTCAAGAAATTATCAGATAACG
GCTGCATGGTTTAAGGAACAGCTTTGCTGATGATCCTGTTAATAGGGATT
TGTGTTGGAGTCTAAATAGTGCTAAGTTCGCTTAGGCATGTTACTTTGTT
AGATACTTTGGATTGCACAGCTTATTATGTGTTGCTTGTAGTGTTAGAAG
TAATGGGAAGGCCATCAAAGTGATCAACATTCATTTTTGTTAATTTGGGT
TGGATTCAACATAAGCTCAAATCCACTTAAGATCGTTGGCATAAAA
back to top