g.arboreum_cottongen_reftransV1_0012411, g.arboreum_cottongen_reftransV1_0012411 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: I1MDX0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 1.888e-52 Identity = 111/138 (80.43%), Postives = 122/138 (88.41%), Query Frame = 1 Query: 1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414 EQVS+A + PLPD NG+M SELLKEKGNAAFKG+ WNKAV+YYTEAI LNGTNATYY+NRAAAYLELGCFQ+AEEDCN AI DKKNVKAYLRRGTAR+ LL YKEAL+DF+HALVLEPQNK A+LAEKRLRK S Sbjct: 462 EQVSVAY-ALPLPDTNGSMGTSELLKEKGNAAFKGRLWNKAVDYYTEAINLNGTNATYYSNRAAAYLELGCFQEAEEDCNMAILHDKKNVKAYLRRGTARELLLRYKEALKDFQHALVLEPQNKTASLAEKRLRKSTS 598
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: V7BTP2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G206200g PE=4 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.309e-51 Identity = 106/135 (78.52%), Postives = 123/135 (91.11%), Query Frame = 1 Query: 1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405 EQVS+ + + PLPD NG +++S+LLKEKGNAAFKG+ WNKAVNYY+EAI LNGTNATY++NRAAAYLELGCFQ+AEEDCNKAI DKKNVKAYLRRGTAR+ LL Y+EAL+DF+HALVLEPQNK A+LAEKRLRK Sbjct: 463 EQVSV-TYTLPLPDANGGIESSDLLKEKGNAAFKGRLWNKAVNYYSEAINLNGTNATYFSNRAAAYLELGCFQEAEEDCNKAILHDKKNVKAYLRRGTARELLLRYEEALKDFQHALVLEPQNKTASLAEKRLRK 596
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A072UQ78_MEDTR (Translocon at the outer membrane ofs-like protein OS=Medicago truncatula GN=MTR_4g094205 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 3.691e-51 Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 1 Query: 1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414 EQ S NS PLP++NGN + SELLKEKGNAAFK +QW+KAV +YT AI+LNGTNATYY NRAAA L+LGCFQ AEEDC+KAI DKKNVKAYLRRGTAR+SLL YKEALEDFKHALVLEPQNK A+LAE+R+RKL S Sbjct: 467 EQASSGFNSMPLPNINGNTEPSELLKEKGNAAFKEQQWDKAVTHYTGAIELNGTNATYYCNRAAACLKLGCFQLAEEDCSKAILLDKKNVKAYLRRGTARESLLRYKEALEDFKHALVLEPQNKYASLAEQRVRKLTS 604
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: U5CWW2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00038p00191060 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 7.507e-51 Identity = 100/138 (72.46%), Postives = 117/138 (84.78%), Query Frame = 1 Query: 1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414 + SI S+ PL D G+M+ +EL KEKGNAAFK KQWNKAVN+YTEAIK+NG +AT+Y+NRAAAYLELGCFQQAE DCN+AI DKKNVKAYLRRGTAR++LL YKEA +DF+HALVLEPQNK A AEKRL+K V+ Sbjct: 147 KHASIISDMQPLSDSEGDMETAELFKEKGNAAFKRKQWNKAVNFYTEAIKINGESATFYSNRAAAYLELGCFQQAEADCNQAILLDKKNVKAYLRRGTARENLLSYKEAAQDFRHALVLEPQNKAALQAEKRLKKKVT 284
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: V4LM12_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10013019mg PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.691e-47 Identity = 101/138 (73.19%), Postives = 120/138 (86.96%), Query Frame = 1 Query: 1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414 +Q IAS+ AP+ + +G M+ SE++KEKGNAA+KG+QWNKAV++YTEAIKLNG NATY+ NRAAAYLELG FQQAEEDC +A+S DKKNVKAYLRRGTAR+SL+ YKEA DF+HALVLEPQNK A AEKRLRKL+S Sbjct: 466 DQADIASSLAPVTESDG-MEVSEVMKEKGNAAYKGRQWNKAVSFYTEAIKLNGANATYFCNRAAAYLELGRFQQAEEDCTEAVSIDKKNVKAYLRRGTARESLIRYKEAAADFRHALVLEPQNKTAKNAEKRLRKLMS 602
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: OE64M_ARATH (Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 8.521e-54 Identity = 104/137 (75.91%), Postives = 120/137 (87.59%), Query Frame = 1 Query: 1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411 +Q +ASN AP+ D NGNM+ASE++KEKGNAA+KGKQWNKAVN+YTEAIKLNG NATYY NRAAA+LEL CFQQAE+DC KA+ DKKNVKAYLRRGTAR+SL+ YKEA DF+HALVLEPQNK A +AEKRLRK + Sbjct: 467 DQAKLASNLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKRLRKHI 603
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: TOC64_PEA (Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.894e-36 Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 1 Query: 1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKL 408 EQ IA+ S + ++E+ KEKGN A+K KQW KA+ +YTEAIKL G NATYY+NRA AYLELG + QAEEDC AISFDKKNVKAY RRGTAR+ L YKEA++DFK+ALVLEP NK A + +RLRKL Sbjct: 456 EQADIAAPSKSSKSVVSKEQSAEISKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKL 591
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: OE64C_ARATH (Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.298e-33 Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 1 Query: 58 DASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKL 408 +++E+ KEKGN AFK K W KA+ Y+EAIKL+ NATYY+NRAAAYLELG F QAEEDC KAI+ DKKNVKAYLRRGTAR+ L K A+EDF++ALVLEP NK A+L+ +RLRK Sbjct: 472 ESAEIAKEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLRKF 588
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: TOM34_RAT (Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.202e-11 Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 49 GNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVAN 381 G+++ + +LKE+GN K KA+ Y+E++ + + Y+NRA +L L +++AE+DC +A+ D KNVKA+ RR A +L YK +L D L +EP+N A+ Sbjct: 188 GDVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNGPAH 298
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 3.124e-11 Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405 K+ GN FK ++ +A+ YT I + TNA NRA AYL++ +++AE DC +AI D KA+ RRGTAR L EA +DF+ L+LEP NK A R++K Sbjct: 288 KDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKK 397 HSP 2 Score: 62.7734 bits (151), Expect = 3.554e-10 Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369 +LKEKGN FK ++++A+ YT+ + + N NRA+AY L F AE DCN AI+ + KAY RRG AR +L ++A +D++ L LEP N Sbjct: 136 VLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDN 235
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.702e-11 Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 1 Query: 19 SNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKV--ANL--AEKRLRKLVS 414 SNS P ++ ++ LK++GN K + + AV+ YT+AI+L+ NA YY NRAAA +LG + A +DC KAI+ D K KAY R G A +L ++EA+ ++ AL L+P+N +NL AE++LR++ S Sbjct: 75 SNSVP-----EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSS 205
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=1 SV=3) HSP 1 Score: 65.0846 bits (157), Expect = 4.956e-11 Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = 1 Query: 1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411 E+ A P +G + +E LK + N FK K + A+ +Y++AI+LN NA YY NR+ AYL C+ A D +AI DKK +K Y RR + +L ++ AL D++ + ++P +K A + + K+V Sbjct: 7 ERTECAETPRDEPPADGTLKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIV 143
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 5.282e-11 Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 1 Query: 37 PDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411 P +G + +E LK + N FK K + A+ +Y++AI+LN +NA YY NR+ AYL C+ A D +AI DKK +K Y RR + +L ++ AL D++ + ++P +K A + + K+V Sbjct: 19 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 143
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 5.509e-11 Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405 K++GN FK ++ +A+ YT I +G NA NRA AYL++ +++AE+DC +AI D KA+ RRGTAR L EA +DF+ L+LEP NK A +++K Sbjct: 286 KDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKK 395 HSP 2 Score: 64.3142 bits (155), Expect = 1.098e-10 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369 +LKEKGN FK ++++A++ YT+ + + N NRA+AY L F AE DCN A++ ++ KAY RRG AR +L +EA +D++ L LEP N Sbjct: 135 VLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNN 234
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 7.371e-11 Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405 K+ GN FK ++ +A+ YT I + TNA NRA AYL++ +++AE DC +AI D KA+ RRGTAR L EA +DF+ L+LEP NK A R++K Sbjct: 286 KDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKK 395 HSP 2 Score: 61.6178 bits (148), Expect = 7.316e-10 Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369 +LKEKGN FK ++++A+ YT+ + + N NRA+AY L F AE DCN AI+ + KAY RRG AR +L ++A +D+ L LEP N Sbjct: 135 VLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDN 234 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012411 ID=g.arboreum_cottongen_reftransV1_0012411; Name=g.arboreum_cottongen_reftransV1_0012411; organism=Gossypium arboreum; type=contig; length=647bpback to top |