g.arboreum_cottongen_reftransV1_0012411, g.arboreum_cottongen_reftransV1_0012411 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0012411
Unique Nameg.arboreum_cottongen_reftransV1_0012411
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length647
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0012411:1..647 .
Chr5:48827198..48828920 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: I1MDX0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.888e-52
Identity = 111/138 (80.43%), Postives = 122/138 (88.41%), Query Frame = 1
Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            EQVS+A  + PLPD NG+M  SELLKEKGNAAFKG+ WNKAV+YYTEAI LNGTNATYY+NRAAAYLELGCFQ+AEEDCN AI  DKKNVKAYLRRGTAR+ LL YKEAL+DF+HALVLEPQNK A+LAEKRLRK  S
Sbjct:  462 EQVSVAY-ALPLPDTNGSMGTSELLKEKGNAAFKGRLWNKAVDYYTEAINLNGTNATYYSNRAAAYLELGCFQEAEEDCNMAILHDKKNVKAYLRRGTARELLLRYKEALKDFQHALVLEPQNKTASLAEKRLRKSTS 598          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: V7BTP2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G206200g PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.309e-51
Identity = 106/135 (78.52%), Postives = 123/135 (91.11%), Query Frame = 1
Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405
            EQVS+ + + PLPD NG +++S+LLKEKGNAAFKG+ WNKAVNYY+EAI LNGTNATY++NRAAAYLELGCFQ+AEEDCNKAI  DKKNVKAYLRRGTAR+ LL Y+EAL+DF+HALVLEPQNK A+LAEKRLRK
Sbjct:  463 EQVSV-TYTLPLPDANGGIESSDLLKEKGNAAFKGRLWNKAVNYYSEAINLNGTNATYFSNRAAAYLELGCFQEAEEDCNKAILHDKKNVKAYLRRGTARELLLRYEEALKDFQHALVLEPQNKTASLAEKRLRK 596          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A072UQ78_MEDTR (Translocon at the outer membrane ofs-like protein OS=Medicago truncatula GN=MTR_4g094205 PE=4 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.691e-51
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            EQ S   NS PLP++NGN + SELLKEKGNAAFK +QW+KAV +YT AI+LNGTNATYY NRAAA L+LGCFQ AEEDC+KAI  DKKNVKAYLRRGTAR+SLL YKEALEDFKHALVLEPQNK A+LAE+R+RKL S
Sbjct:  467 EQASSGFNSMPLPNINGNTEPSELLKEKGNAAFKEQQWDKAVTHYTGAIELNGTNATYYCNRAAACLKLGCFQLAEEDCSKAILLDKKNVKAYLRRGTARESLLRYKEALEDFKHALVLEPQNKYASLAEQRVRKLTS 604          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: U5CWW2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00038p00191060 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.507e-51
Identity = 100/138 (72.46%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            +  SI S+  PL D  G+M+ +EL KEKGNAAFK KQWNKAVN+YTEAIK+NG +AT+Y+NRAAAYLELGCFQQAE DCN+AI  DKKNVKAYLRRGTAR++LL YKEA +DF+HALVLEPQNK A  AEKRL+K V+
Sbjct:  147 KHASIISDMQPLSDSEGDMETAELFKEKGNAAFKRKQWNKAVNFYTEAIKINGESATFYSNRAAAYLELGCFQQAEADCNQAILLDKKNVKAYLRRGTARENLLSYKEAAQDFRHALVLEPQNKAALQAEKRLKKKVT 284          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: V4LM12_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10013019mg PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.691e-47
Identity = 101/138 (73.19%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            +Q  IAS+ AP+ + +G M+ SE++KEKGNAA+KG+QWNKAV++YTEAIKLNG NATY+ NRAAAYLELG FQQAEEDC +A+S DKKNVKAYLRRGTAR+SL+ YKEA  DF+HALVLEPQNK A  AEKRLRKL+S
Sbjct:  466 DQADIASSLAPVTESDG-MEVSEVMKEKGNAAYKGRQWNKAVSFYTEAIKLNGANATYFCNRAAAYLELGRFQQAEEDCTEAVSIDKKNVKAYLRRGTARESLIRYKEAAADFRHALVLEPQNKTAKNAEKRLRKLMS 602          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: OE64M_ARATH (Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.521e-54
Identity = 104/137 (75.91%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411
            +Q  +ASN AP+ D NGNM+ASE++KEKGNAA+KGKQWNKAVN+YTEAIKLNG NATYY NRAAA+LEL CFQQAE+DC KA+  DKKNVKAYLRRGTAR+SL+ YKEA  DF+HALVLEPQNK A +AEKRLRK +
Sbjct:  467 DQAKLASNLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKRLRKHI 603          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: TOC64_PEA (Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.894e-36
Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKL 408
            EQ  IA+ S     +     ++E+ KEKGN A+K KQW KA+ +YTEAIKL G NATYY+NRA AYLELG + QAEEDC  AISFDKKNVKAY RRGTAR+ L  YKEA++DFK+ALVLEP NK A  + +RLRKL
Sbjct:  456 EQADIAAPSKSSKSVVSKEQSAEISKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKL 591          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: OE64C_ARATH (Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.298e-33
Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 1
Query:   58 DASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKL 408
            +++E+ KEKGN AFK K W KA+  Y+EAIKL+  NATYY+NRAAAYLELG F QAEEDC KAI+ DKKNVKAYLRRGTAR+ L   K A+EDF++ALVLEP NK A+L+ +RLRK 
Sbjct:  472 ESAEIAKEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLRKF 588          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: TOM34_RAT (Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.202e-11
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   49 GNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVAN 381
            G+++ + +LKE+GN   K     KA+  Y+E++  +   +  Y+NRA  +L L  +++AE+DC +A+  D KNVKA+ RR  A  +L  YK +L D    L +EP+N  A+
Sbjct:  188 GDVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNGPAH 298          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.124e-11
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405
            K+ GN  FK  ++ +A+  YT  I  + TNA    NRA AYL++  +++AE DC +AI  D    KA+ RRGTAR  L    EA +DF+  L+LEP NK A     R++K
Sbjct:  288 KDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKK 397          

HSP 2 Score: 62.7734 bits (151), Expect = 3.554e-10
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369
            +LKEKGN  FK  ++++A+  YT+ +  +  N     NRA+AY  L  F  AE DCN AI+  +   KAY RRG AR +L   ++A +D++  L LEP N
Sbjct:  136 VLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDN 235          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.702e-11
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   19 SNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKV--ANL--AEKRLRKLVS 414
            SNS P      ++  ++ LK++GN   K + +  AV+ YT+AI+L+  NA YY NRAAA  +LG +  A +DC KAI+ D K  KAY R G A  +L  ++EA+  ++ AL L+P+N    +NL  AE++LR++ S
Sbjct:   75 SNSVP-----EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSS 205          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=1 SV=3)

HSP 1 Score: 65.0846 bits (157), Expect = 4.956e-11
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = 1
Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411
            E+   A      P  +G +  +E LK + N  FK K +  A+ +Y++AI+LN  NA YY NR+ AYL   C+  A  D  +AI  DKK +K Y RR  +  +L  ++ AL D++  + ++P +K A +  +   K+V
Sbjct:    7 ERTECAETPRDEPPADGTLKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIV 143          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.282e-11
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   37 PDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411
            P  +G +  +E LK + N  FK K +  A+ +Y++AI+LN +NA YY NR+ AYL   C+  A  D  +AI  DKK +K Y RR  +  +L  ++ AL D++  + ++P +K A +  +   K+V
Sbjct:   19 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 143          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 5.509e-11
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405
            K++GN  FK  ++ +A+  YT  I  +G NA    NRA AYL++  +++AE+DC +AI  D    KA+ RRGTAR  L    EA +DF+  L+LEP NK A     +++K
Sbjct:  286 KDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKK 395          

HSP 2 Score: 64.3142 bits (155), Expect = 1.098e-10
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369
            +LKEKGN  FK  ++++A++ YT+ +  +  N     NRA+AY  L  F  AE DCN A++ ++   KAY RRG AR +L   +EA +D++  L LEP N
Sbjct:  135 VLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNN 234          
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.371e-11
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405
            K+ GN  FK  ++ +A+  YT  I  + TNA    NRA AYL++  +++AE DC +AI  D    KA+ RRGTAR  L    EA +DF+  L+LEP NK A     R++K
Sbjct:  286 KDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKK 395          

HSP 2 Score: 61.6178 bits (148), Expect = 7.316e-10
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369
            +LKEKGN  FK  ++++A+  YT+ +  +  N     NRA+AY  L  F  AE DCN AI+  +   KAY RRG AR +L   ++A +D+   L LEP N
Sbjct:  135 VLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDN 234          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1MDX0_SOYBN1.888e-5280.43Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
V7BTP2_PHAVU2.309e-5178.52Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A072UQ78_MEDTR3.691e-5177.54Translocon at the outer membrane ofs-like protein ... [more]
U5CWW2_AMBTC7.507e-5172.46Uncharacterized protein OS=Amborella trichopoda GN... [more]
V4LM12_EUTSA1.691e-4773.19Uncharacterized protein OS=Eutrema salsugineum GN=... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
OE64M_ARATH8.521e-5475.91Outer envelope protein 64, mitochondrial OS=Arabid... [more]
TOC64_PEA1.894e-3663.24Translocon at the outer membrane of chloroplasts 6... [more]
OE64C_ARATH1.298e-3367.52Outer envelope protein 64, chloroplastic OS=Arabid... [more]
TOM34_RAT1.202e-1136.94Mitochondrial import receptor subunit TOM34 OS=Rat... [more]
RPAP3_MOUSE3.124e-1142.73RNA polymerase II-associated protein 3 OS=Mus musc... [more]
SGTB_HUMAN3.702e-1141.18Small glutamine-rich tetratricopeptide repeat-cont... [more]
PPP5_MOUSE4.956e-1134.31Serine/threonine-protein phosphatase 5 OS=Mus musc... [more]
PPP5_HUMAN5.282e-1136.00Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
RPAP3_HUMAN5.509e-1141.82RNA polymerase II-associated protein 3 OS=Homo sap... [more]
RPAP3_RAT7.371e-1142.73RNA polymerase II-associated protein 3 OS=Rattus n... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 45..78
e-value: 2.8E-6
score: 36.9
coord: 79..112
e-value: 0.0022
score: 27.2
coord: 11..44
e-value: 8.0E-5
score: 32.0
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 45..78
score: 8.378
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 79..112
score: 10.001
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 11..44
score: 8.703
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 12..44
e-value: 1.8E-5
score: 24.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 9..115
e-value: 2.0E-35
score: 121.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 7..116
IPR001440Tetratricopeptide repeat 1PFAMPF00515TPR_1coord: 46..78
e-value: 4.5E-8
score: 32.4
NoneNo IPR availablePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 7..125
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 11..112
score: 23.644

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0012411 ID=g.arboreum_cottongen_reftransV1_0012411; Name=g.arboreum_cottongen_reftransV1_0012411; organism=Gossypium arboreum; type=contig; length=647bp
GAACAAGTCAGCATAGCATCCAATTCAGCACCATTGCCTGATCTCAATGG
TAATATGGATGCTTCTGAACTGTTGAAGGAAAAGGGAAATGCTGCTTTTA
AGGGAAAGCAATGGAACAAGGCAGTTAATTATTACACTGAAGCTATTAAG
TTAAATGGGACAAATGCGACATACTATAACAACCGGGCAGCAGCTTACTT
GGAACTAGGATGCTTTCAGCAAGCTGAAGAGGACTGCAATAAGGCAATAT
CATTTGACAAAAAGAATGTGAAGGCATATCTGAGACGTGGGACAGCCAGA
GACTCACTACTCTGTTATAAAGAGGCCCTTGAAGATTTCAAACACGCATT
GGTTCTAGAGCCTCAAAATAAAGTAGCCAACCTCGCAGAGAAAAGACTAC
GAAAACTGGTTAGTTGATACTGCTCTTCTCTGCTTCGCTTCTTGTCTAAC
AAATGCGAAACAAGGTTGACCGAAGATAGGCGCAATCTTTGTGCAATTTA
CCCTAACCTTCGGTAAACGGAAAATCAAAGTAAAAGCATGTTGGTTAGAG
GGTGCTGCTGGTGCAGTTTTTGGCCGCAATTTCTTTTCCTTCGACACATT
GTTTCTGTGTAATCAGTATATGTTCGACCTATGCAATCTTGTTGAGA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR013105TPR_2
IPR011990TPR-like_helical_dom_sf
IPR001440TPR_1
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding