g.arboreum_cottongen_reftransV1_0006192, g.arboreum_cottongen_reftransV1_0006192 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0006192
Unique Name	g.arboreum_cottongen_reftransV1_0006192
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0006192:1..465 . Chr12:5704900..5705364 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: A0A022RB80_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005195mg PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.575e-33
Identity = 92/151 (60.93%), Postives = 109/151 (72.19%), Query Frame = -3

Query:   11 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQEVTE 463
            GVIFLSWMSFQEILEFLNFLY+IGML EFAAFIKLRIKKP+LHRPYRVPLET G  +LCLPP LLLVLVM LAS  T++VS  V++ G  +YP L+ AK+R+W +F       + + N D     QE  +EAS SLL DL S      V++
Sbjct:  339 GVIFLSWMSFQEILEFLNFLYAIGMLFEFAAFIKLRIKKPELHRPYRVPLETSGAVILCLPPVLLLVLVMSLASLKTVLVSGAVVVFGFGLYPFLIRAKERRWMEF---RSDAIAVGNSDNDVEGQE--NEASESLLTDLPSSSRTSCVSD 484

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: K4D0C1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g049640.1 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.056e-32
Identity = 87/140 (62.14%), Postives = 109/140 (77.86%), Query Frame = -3

Query:   53 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPK---QEVSDEASVSLL 463
            G IFLSWM+FQEILEFLNFLYS+GMLLEFAAFI LRIKKP+LHRPY+VPL+T G  +LCLPP+LLL+ VM LAS  T IVS  VII+G+ +YP +++AK+++W  F+  EQL +  D  D   P    Q V+D+AS+SLL
Sbjct:  331 GTIFLSWMTFQEILEFLNFLYSVGMLLEFAAFINLRIKKPNLHRPYKVPLQTVGAMLLCLPPSLLLLFVMYLASLKTFIVSGSVIIVGLFLYPAVMYAKEKQWCHFNTSEQLGLSNDLEDRSSPTELDQIVADDASLSLL 470

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: V4LBW8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10020631mg PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.606e-31
Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = -3

Query:   50 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDN-LDTPRPKQEVSDEASVSLLP 463
            GVIFLSWMSFQEI+EFLNFLY++GMLLEFAAF+KLRIKKPDLHRPYRVPL TFG  MLCLPP+ L++LVM LA+  T ++S  +I++G  +YP L   K++ W +F  I +   P+   L  P+  QE  DE+S SLLP
Sbjct:  342 GVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGTLMLCLPPSFLVILVMVLAAPKTFLISGAIIVVGFCLYPFLELVKEKGWARF--IPEETRPVSRVLSEPQLDQEHGDESSASLLP 478

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: R0I2A4_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013593mg PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.329e-31
Identity = 83/139 (59.71%), Postives = 110/139 (79.14%), Query Frame = -3

Query:   50 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDT-PRPKQEVSDEASVSLLP 463
            GVIFLSWMSFQEI+EFLNFLY++GMLLEFAAF+KLRIKKPDLHRPYRVPL TFGV++LCLPP+LL++LVM LA+  T ++S ++II+G  +YP L   K+++W +F  I +   P+  + +  +  +E  DE+S SLLP
Sbjct:  343 GVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSLLCLPPSLLVILVMVLATPKTFLISGLIIILGFCLYPFLTLVKEKRWARF--IPEETRPVSGVPSESQLDEEHGDESSASLLP 479

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: W1P7J5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00144p00042270 PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.040e-30
Identity = 88/153 (57.52%), Postives = 116/153 (75.82%), Query Frame = -3

Query:   23 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDI------EQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQ 463
            GVIFLSWMSFQEI+EFLNFLYS+GMLLEFAAF++LRIKKPDL RPY+VPLETFGV +LC+PPA+LL+LVMCLAS  T IVS  VII+G L+YP + +AK  +  +F         +  ++P+     P+ +Q+++DEA+V LL +L+   + Q
Sbjct:  341 GVIFLSWMSFQEIVEFLNFLYSVGMLLEFAAFVRLRIKKPDLQRPYKVPLETFGVIVLCMPPAVLLLLVMCLASFKTFIVSSFVIILGFLLYPSIEYAKQNRCVRFGSTLVPSKQDHEIIPV----VPQ-QQDIADEAAVGLLEELSDIKVKQ 488

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PHSD_ARATH (Probable polyamine transporter At3g19553 OS=Arabidopsis thaliana GN=At3g19553 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.407e-33
Identity = 82/139 (58.99%), Postives = 110/139 (79.14%), Query Frame = -3

Query:   50 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDT-PRPKQEVSDEASVSLLP 463
            GVIFLSWMSFQEI+EFLNFLY++GMLLEFAAF+KLRIKKPDLHRPYRVPL TFGV+MLCLPP+LL++LVM LA+  T ++S ++I++G  +YP L   K+++W +F  I +   P+  + +  +  +E  DE++ SLLP
Sbjct:  343 GVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIVLGFCLYPFLTLVKEKQWARF--IPEETRPVSGVSSESQLDEEHGDESAASLLP 479

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PHSB_ARATH (Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.651e-16
Identity = 47/107 (43.93%), Postives = 76/107 (71.03%), Query Frame = -3

Query:  143 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFD 463
            GV+ LSW+SFQEI+   N LY +GM+LEF AF+++R+K P   RPY++P+ T G  ++C+PP +L+  V+ L+S     VS++++IIG L++P+L H   ++W +F 
Sbjct:  368 GVVLLSWLSFQEIVAAENLLYCVGMILEFIAFVRMRMKHPAASRPYKIPIGTTGSILMCIPPTILICAVVALSSLKVAAVSIVMMIIGFLIHPLLNHMDRKRWVKFS 474

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PUT1_ORYSJ (Polyamine transporter PUT1 OS=Oryza sativa subsp. japonica GN=PUT1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.776e-14
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = -3

Query:  146 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQF 463
            GV+ LS MSFQEI+   NFLY  GMLLEF AFI  R+++PD  RPYRVPL T G   + +PP  L+ +V+ L++    +VS+  + +G+++ P L   + ++W +F
Sbjct:  402 GVLLLSMMSFQEIVAAENFLYCFGMLLEFVAFILHRVRRPDAARPYRVPLGTAGCVAMLVPPTALIAVVLALSTLKVAVVSLGAVAMGLVLQPALRFVEKKRWLRF 507

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PUT1_ORYSI (Polyamine transporter PUT1 OS=Oryza sativa subsp. indica GN=PUT1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.776e-14
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = -3

Query:  146 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQF 463
            GV+ LS MSFQEI+   NFLY  GMLLEF AFI  R+++PD  RPYRVPL T G   + +PP  L+ +V+ L++    +VS+  + +G+++ P L   + ++W +F
Sbjct:  402 GVLLLSMMSFQEIVAAENFLYCFGMLLEFVAFILHRVRRPDAARPYRVPLGTAGCVAMLVPPTALIAVVLALSTLKVAVVSLGAVAMGLVLQPALRFVEKKRWLRF 507

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PHSA_ARATH (Probable polyamine transporter At1g31820 OS=Arabidopsis thaliana GN=At1g31820 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.220e-12
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = -3

Query:  146 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQF 463
            GV+ LS +SFQEI+   N LY  GM+LEF AF++LR K P   RPY++P+ T G  ++C+PP +L+ LV+ L++    +VS ++++IG LM P L H   +KW +F
Sbjct:  355 GVLLLSGLSFQEIIAAENLLYCGGMILEFIAFVRLRKKHPAASRPYKIPVGTVGSILICVPPIVLICLVIVLSTIKVALVSFVMVVIGFLMKPCLNHMDGKKWVKF 460

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: RMV1_ARATH (Polyamine transporter RMV1 OS=Arabidopsis thaliana GN=RMV1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.830e-12
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = -3

Query:  302 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFG 463
            GVI LSW+SFQEI+   N LY  GM+LEF  F++LR+K P   RP+++P+   G
Sbjct:  374 GVIILSWLSFQEIVAAENLLYCFGMVLEFITFVRLRMKYPAASRPFKIPVGVLG 427

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PHSC_ARATH (Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.673e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = -3

Query:  299 LSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGV 451
            LS+M+F +I+   NFLY++GM LEFA+FI LR K P L RPYRVPL+  G+
Sbjct:  354 LSYMNFTDIISSANFLYTLGMFLEFASFIWLRRKLPQLKRPYRVPLKIPGL 404

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A022RB80_ERYGU	7.575e-33	60.93	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
K4D0C1_SOLLC	1.056e-32	62.14	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
V4LBW8_EUTSA	3.606e-31	60.43	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
R0I2A4_9BRAS	7.329e-31	59.71	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
W1P7J5_AMBTC	2.040e-30	57.52	Uncharacterized protein OS=Amborella trichopoda GN...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 7


Match Name	E-value	Identity	Description
PHSD_ARATH	7.407e-33	58.99	Probable polyamine transporter At3g19553 OS=Arabid...	[more]
PHSB_ARATH	7.651e-16	43.93	Probable polyamine transporter At1g31830 OS=Arabid...	[more]
PUT1_ORYSJ	3.776e-14	44.34	Polyamine transporter PUT1 OS=Oryza sativa subsp. ...	[more]
PUT1_ORYSI	3.776e-14	44.34	Polyamine transporter PUT1 OS=Oryza sativa subsp. ...	[more]
PHSA_ARATH	2.220e-12	45.28	Probable polyamine transporter At1g31820 OS=Arabid...	[more]
RMV1_ARATH	4.830e-12	51.85	Polyamine transporter RMV1 OS=Arabidopsis thaliana...	[more]
PHSC_ARATH	3.673e-11	58.82	Probable polyamine transporter At3g13620 OS=Arabid...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002293	Amino acid/polyamine transporter I	PANTHER	PTHR11785	AMINO ACID TRANSPORTER	coord: 1..127
None	No IPR available	PANTHER	PTHR11785:SF366	SUBFAMILY NOT NAMED	coord: 1..127
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..65
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..91
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 66..70
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 92..150
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 33..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	TMHMM	TMhelix		coord: 10..32
None	No IPR available	TMHMM	TMhelix		coord: 70..92
None	No IPR available	TMHMM	TMhelix		coord: 44..66

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0006192 ID=g.arboreum_cottongen_reftransV1_0006192; Name=g.arboreum_cottongen_reftransV1_0006192; organism=Gossypium arboreum; type=contig; length=465bp
CAGGTGAAGTTTCTGTGACTTCTTGGTTAATCCCCGGTGATGTTAAATCT
GGAAGAAGACTAACCGAGGCTTCATCCGAAACTTCTTGTTTAGGTCGGGG
CGTGTCCAGATTATCTAAAGGCACCACCAGTTGTTCTATATCATCAAATT
GGGTCCATTTCCTATCCTTTGCATGAACTAAAACAGGGTACATTAAGATC
CCAATGATAATAACTATAACACTTACAATTAATGTTGTTGCAGAAGCTAG
GCACATGACAAGAACAAGTAACAATGCAGGTGGCAAGCAAAGCATTGTTA
CACCAAATGTTTCCAAAGGGACCCTGTAAGGTCTATGCAGATCTGGCTTT
TTGATTCTCAGTTTTATGAAAGCAGCAAATTCGAGAAGCATTCCAATTGA
GTAAAGGAAATTCAGGAATTCCAGAATTTCCTGGAAACTCATCCATGACA
AGAAAATAACTCCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002293	AA/rel_permease1

Vocabulary: **Molecular Function**
Term	Definition
GO:0015171	amino acid transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0003333	amino acid transmembrane transport

Search form

g.arboreum_cottongen_reftransV1_0006192, g.arboreum_cottongen_reftransV1_0006192 (contig) Gossypium arboreum

Pages