g.arboreum_cottongen_reftransV1_0001666, g.arboreum_cottongen_reftransV1_0001666 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001666
Unique Nameg.arboreum_cottongen_reftransV1_0001666
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length750
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0001666:5..750 .
Chr12:30816247..30819385 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2RUX0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_012G1630001 PE=4 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 4.219e-124
Identity = 177/187 (94.65%), Postives = 181/187 (96.79%), Query Frame = -1
Query:    4 DGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVF 564
            DGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGL DCVD+IDAQRLLGYTLYKDGKEA VSFPLEKFQSHVAGRTFHNGRFVQ LRKKVASLHN+SLEQGTVTSLIEENGIVKGVQYK+ESGQVLTAYA LTIVCDGCFSNLRRSLC PKVDIPSYFVGFILTNCNLP KNYGAII+AHPSPIVF
Sbjct:    1 DGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLEDCVDEIDAQRLLGYTLYKDGKEAQVSFPLEKFQSHVAGRTFHNGRFVQRLRKKVASLHNISLEQGTVTSLIEENGIVKGVQYKNESGQVLTAYASLTIVCDGCFSNLRRSLCYPKVDIPSYFVGFILTNCNLPTKNYGAIILAHPSPIVF 187          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2TFL8_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_012G1630001 PE=4 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 5.808e-123
Identity = 177/187 (94.65%), Postives = 181/187 (96.79%), Query Frame = -1
Query:    4 DGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVF 564
            DGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGL DCVD+IDAQRLLGYTLYKDGKEA VSFPLEKFQSHVAGRTFHNGRFVQ LRKKVASLHN+SLEQGTVTSLIEENGIVKGVQYK+ESGQVLTAYA LTIVCDGCFSNLRRSLC PKVDIPSYFVGFILTNCNLP KNYGAII+AHPSPIVF
Sbjct:    1 DGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLEDCVDEIDAQRLLGYTLYKDGKEAQVSFPLEKFQSHVAGRTFHNGRFVQRLRKKVASLHNISLEQGTVTSLIEENGIVKGVQYKNESGQVLTAYASLTIVCDGCFSNLRRSLCYPKVDIPSYFVGFILTNCNLPTKNYGAIILAHPSPIVF 187          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2V784_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G162900 PE=4 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 5.361e-118
Identity = 195/248 (78.63%), Postives = 212/248 (85.48%), Query Frame = -1
Query:    1 LIRFGGQRKLNRVASMEFPKKNSVNKTGS-----EXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 729
            L+R  G  KL R ASMEFPK+N VNK G+     E VGT ++IIVGAGVAGAALAYSLGKD  RV+VIERDLNA NR+AGE L+PGGYLKLIELGL DCVD+IDAQ +LGYTL KDGKEA VSFPLEKFQSHV G+TFHNGRFVQ LRKK ASLHNVSLEQGTVTSL+EENGIVKGV YK +SGQ+LTAYAPLTIVCDGCFSNLRRSLC  KVDIPSYFVGFILTNC LP + YG  I+A PSPI+FY
Sbjct:   22 LVRSWGLSKLKRAASMEFPKENCVNKNGNGEGEGEAVGTTEVIIVGAGVAGAALAYSLGKDECRVQVIERDLNALNRIAGEFLMPGGYLKLIELGLGDCVDEIDAQPILGYTLNKDGKEALVSFPLEKFQSHVVGKTFHNGRFVQRLRKKAASLHNVSLEQGTVTSLLEENGIVKGVYYKDKSGQLLTAYAPLTIVCDGCFSNLRRSLCHSKVDIPSYFVGFILTNCKLPKEKYGVFILADPSPILFY 269          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0B0N3I3_GOSAR (Squalene monooxygenase OS=Gossypium arboreum GN=F383_31416 PE=4 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.504e-112
Identity = 192/264 (72.73%), Postives = 207/264 (78.41%), Query Frame = -1
Query:    1 LNRVASMEFPKKNSVNKTG------------------------------SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 702
            + R ASM FPK N VNK G                              SE VGT DIIIVGAGVAGAALAYSLGKDGR+V VIERDLNAPNR+AGESL+PGGYLKLIELGL DCVD+IDAQR+LGY LYKDGK   VSFPLEKFQ HVAGR FHNGRFVQ LRKK ASLHNV+LEQG  TSL+EENG VKGV YK++SGQ+LTAYAPLTIVCDGCFSNLRRSLC PKVDIPSY VG ILTNC LPI+NYGA+I+A PSPI+FY
Sbjct:    1 MERAASMVFPKGNCVNKNGNSEDVGTTDIIIVGAGVTGAALGYSLGKENSEAVGTTDIIIVGAGVAGAALAYSLGKDGRQVLVIERDLNAPNRIAGESLLPGGYLKLIELGLQDCVDEIDAQRILGYILYKDGKNVPVSFPLEKFQPHVAGRNFHNGRFVQKLRKKAASLHNVNLEQGIATSLLEENGTVKGVHYKNKSGQMLTAYAPLTIVCDGCFSNLRRSLCYPKVDIPSYTVGVILTNCKLPIENYGALILADPSPILFY 264          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A061DWU9_THECC (Squalene monooxygenase, putative OS=Theobroma cacao GN=TCM_006348 PE=4 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 3.164e-102
Identity = 182/251 (72.51%), Postives = 205/251 (81.67%), Query Frame = -1
Query:    1 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTGS-EXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            VF Y NSL+R   + K  R +SMEFP +N V KTG+ E  G  D+IIVGAGVAGAALAY+LGKDGRRV VIER+LN P+R+AGE L+PGGY+KL ELGL DCV  IDAQR+LGY LYKDGK   +SFPLEKFQSHVAGRTFHNGRFVQ LR+K ASL NV+LEQGTVTSL+EENG + GV YK++SGQ LTA APLTIVCDG FSNLRRSLC  KVDIPSYFVG +L NC LP  NYGAII+  PSPI+FY
Sbjct:   18 VFWY-NSLVR---ELKKTRTSSMEFPVENRVKKTGNGEVAGAIDVIIVGAGVAGAALAYTLGKDGRRVHVIERELNEPDRIAGEGLLPGGYVKLTELGLEDCVAGIDAQRILGYDLYKDGKSTKISFPLEKFQSHVAGRTFHNGRFVQKLREKAASLPNVNLEQGTVTSLLEENGTILGVHYKNKSGQELTASAPLTIVCDGGFSNLRRSLCYRKVDIPSYFVGLVLENCKLPHANYGAIILEDPSPILFY 264          

HSP 2 Score: 325.865 bits (834), Expect = 1.339e-100
Identity = 179/245 (73.06%), Postives = 202/245 (82.45%), Query Frame = -1
Query:    1 LIRFGGQRKLNRV-ASMEFPKKNSVNKTGS-EXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 729
            LI     R+L +   SMEFP +N V KTG+ E VG  DIIIVGAGVAGAALAYSLGKDGRRV VIER+LN P+R+AGE+L+PGGY+KLIELGL DCVD IDAQR+ GY LYKDG    +SFPLEKFQSHVAGR FHNGRFVQ LR+K ASL NV+LEQGTVTSL+EE+G ++GV YK++SGQ LTA APLTIVCDG FSNLRRSLC PKVDIPSYFVG +L NC LP  NYGAII+  PSPI+FY
Sbjct:  485 LIWVASVRRLKKTRISMEFPVENCVKKTGNGEVVGATDIIIVGAGVAGAALAYSLGKDGRRVHVIERELNPPDRIAGEALLPGGYVKLIELGLDDCVDGIDAQRISGYDLYKDGNGTKISFPLEKFQSHVAGRNFHNGRFVQKLREKAASLPNVNLEQGTVTSLLEESGTIQGVHYKNKSGQELTASAPLTIVCDGGFSNLRRSLCYPKVDIPSYFVGLVLENCKLPHANYGAIILEDPSPILFY 729          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2V604_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_012G1621001 PE=4 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 5.557e-101
Identity = 147/188 (78.19%), Postives = 166/188 (88.30%), Query Frame = -1
Query:    1 DGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 564
            DGR+VRVIERDLN P+R+AGESL+PGGYLKLIELGL DCVD+IDAQR  GY LYKDGK A +S+PLEKF SHV G++FHN RFVQ LRKK ASLHNVSLEQGTVTSL+EENG +KG  YK +S Q+LTAYA LT+VCDGCFSNLRRSLC+PKVD+PSYFVGFILTNC L  +N+GAII+A PSPIVFY
Sbjct:    1 DGRQVRVIERDLNPPDRIAGESLMPGGYLKLIELGLEDCVDEIDAQRNQGYILYKDGKNAPISYPLEKFHSHVVGKSFHNNRFVQKLRKKAASLHNVSLEQGTVTSLLEENGTIKGGHYKDKSSQMLTAYASLTVVCDGCFSNLRRSLCNPKVDVPSYFVGFILTNCKLSDQNHGAIILADPSPIVFY 188          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A061E4U9_THECC (Squalene monooxygenase OS=Theobroma cacao GN=TCM_006347 PE=4 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 5.060e-100
Identity = 172/257 (66.93%), Postives = 203/257 (78.99%), Query Frame = -1
Query:    1 VFLYCNSLIRFGGQRKLNRVAS------MEFPKKNSVNKTGS-EXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            VFLY N+ +R   + K    A+      M  P +N V KTG+ E  G+ DIIIVGAGVAG+ALAY+ GKDGRRV VIERDL+ P+R+ GE L PGGYLKLIELGL DCVDDIDAQ++ GY LYKDGK   +S+PLEKF S VAGR+FHNGRF+Q +R+K ASL NV+LEQGTVTSL+EENG +KGVQYK++ GQ LTAYAPLTIVCDGCFSNLRRSLC PKV++PS FVG +L NC LP  NYG +I+A PSPI+FY
Sbjct:   18 VFLY-NAFVRGFNKTKAAAGAASSSSSSMVSPMENCVRKTGNGEVAGSTDIIIVGAGVAGSALAYTFGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDDIDAQQVFGYALYKDGKNTRLSYPLEKFHSDVAGRSFHNGRFIQRMRQKAASLPNVTLEQGTVTSLLEENGTIKGVQYKTKGGQELTAYAPLTIVCDGCFSNLRRSLCDPKVEVPSCFVGLVLENCELPHANYGHVILADPSPILFY 273          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2TQH6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G162200 PE=4 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 4.908e-98
Identity = 146/188 (77.66%), Postives = 165/188 (87.77%), Query Frame = -1
Query:    1 DGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 564
            DGR+V VIER+LNAPNR+AGE+L+PGGYLKLIELGL D   +IDAQR+LGY LYKDGK   VSFPLEKFQ HVAGR FHNG F Q L+KK ASLHNV+LEQGTV SL+EENGIVKGV YK++SGQ+LTAYAPLTIVC+GCFSNLRRSLC PKVDIPSY VG ILTNC LP +NYGA+I+A PSP++FY
Sbjct:   28 DGRQVLVIERNLNAPNRIAGENLLPGGYLKLIELGLQD---EIDAQRILGYILYKDGKNVLVSFPLEKFQPHVAGRNFHNGHFFQKLQKKAASLHNVNLEQGTVISLLEENGIVKGVHYKNKSGQMLTAYAPLTIVCNGCFSNLRRSLCYPKVDIPSYTVGVILTNCKLPNENYGALILADPSPVLFY 212          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: K4A894_SETIT (Uncharacterized protein OS=Setaria italica GN=Si035100m.g PE=4 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 7.236e-98
Identity = 142/195 (72.82%), Postives = 168/195 (86.15%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+LGKDGRRV VIERDL  P+R+ GE L PGGYLKLIELGL DCV++IDAQR+LGY L+KDG+   +++PLEKF S VAGR+FHNGRF+Q +R+K ASL NV LEQGTVTSL+EENG VKGVQYK++SGQ L AYAPLTIVCDGCFSNLRR+LCSPKVD+PS FVG +L NC LP  N+G +I+A+PSPI+FY
Sbjct:   83 LAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCVEEIDAQRVLGYALFKDGRNTKLAYPLEKFHSDVAGRSFHNGRFIQRMRQKAASLPNVQLEQGTVTSLLEENGTVKGVQYKTKSGQELKAYAPLTIVCDGCFSNLRRALCSPKVDVPSCFVGLVLENCQLPHPNHGHVILANPSPILFY 277          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: B8A3C6_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 1.595e-97
Identity = 141/195 (72.31%), Postives = 168/195 (86.15%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+LGKDGRRV VIERDL  P+R+ GE L PGGYLKLIELGL DCV++IDAQR+LGY L+KDG+   +++PLEKF S VAGR+FHNGRF+Q +R+K ASL NV LEQGTVTSL+EENG VKGVQYK++SG+ L AYAPLTIVCDGCFSNLRR+LCSPKVD+PS FVG +L NC LP  N+G +I+A+PSPI+FY
Sbjct:   76 LAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLQDCVEEIDAQRVLGYALFKDGRNTKLAYPLEKFHSDVAGRSFHNGRFIQRMRQKAASLPNVQLEQGTVTSLLEENGTVKGVQYKTKSGEELKAYAPLTIVCDGCFSNLRRALCSPKVDVPSCFVGLVLENCQLPHPNHGHVILANPSPILFY 270          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG16_ARATH (Squalene epoxidase 3 OS=Arabidopsis thaliana GN=SQE3 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 2.395e-94
Identity = 133/195 (68.21%), Postives = 163/195 (83.59%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LA++LGK+GRRV VIERDL  P+R+ GE L PGGYLKLIELGL DCV DIDAQR+LGY L+KDGK   +S+PL++F S VAGR+FHNGRFVQ +R+K + L NV +EQGTVTSL+EENGI+KGVQYK++ GQ L ++APLTIVCDGCFSNLRRSLC PKV++PS FVG +L NC LP  N+G +++  PSPI+FY
Sbjct:   69 LAHTLGKEGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCVKDIDAQRVLGYALFKDGKHTKLSYPLDQFDSDVAGRSFHNGRFVQRMREKASLLPNVRMEQGTVTSLVEENGIIKGVQYKTKDGQELKSFAPLTIVCDGCFSNLRRSLCKPKVEVPSNFVGLVLENCELPFPNHGHVVLGDPSPILFY 263          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 5.592e-91
Identity = 135/195 (69.23%), Postives = 161/195 (82.56%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L  DGRRV VIERDL   +R+ GE L PGGYLKLIELGL DCV++IDAQR+ GY LY DGK   +S+PLEKF S VAGR+FHNGRFVQ +R+K ASL NV +EQGTVTSL+E+ G VKGVQYK++ GQ L+A+APLTIVCDGCFSNLRRSLC+PKV++PS FVG IL N +LP  N+G +I+A PSPI+FY
Sbjct:   89 LAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKAASLPNVRMEQGTVTSLVEKKGSVKGVQYKTKDGQELSAFAPLTIVCDGCFSNLRRSLCNPKVEVPSCFVGLILENIDLPHINHGHVILADPSPILFY 283          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG14_ARATH (Squalene epoxidase 1 OS=Arabidopsis thaliana GN=SQE1 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 5.347e-89
Identity = 126/195 (64.62%), Postives = 163/195 (83.59%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+LGKD RRV VIERDL+ P+R+ GE L PGGYLKL+ELG+ DCV++IDAQR+ GY L+K+GK   +++PLEKF   V+GR+FHNGRF+Q +R+K ASL NV LEQGTV SL+EENG +KGV+YK+++G+  TA+A LTIVCDGCFSNLRRSLC+P+V++PS FVG +L NCNLP  N+G +++A PSPI+ Y
Sbjct:   75 LAYTLGKDKRRVHVIERDLSEPDRIVGELLQPGGYLKLLELGIEDCVEEIDAQRVYGYALFKNGKRIRLAYPLEKFHEDVSGRSFHNGRFIQRMREKAASLPNVQLEQGTVLSLLEENGTIKGVRYKNKAGEEQTAFAALTIVCDGCFSNLRRSLCNPQVEVPSCFVGLVLENCNLPYANHGHVVLADPSPILMY 269          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG15_ARATH (Squalene epoxidase 2, mitochondrial OS=Arabidopsis thaliana GN=SQE2 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.754e-88
Identity = 125/195 (64.10%), Postives = 156/195 (80.00%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LA++LGK+GRRV VIERD +  +R+ GE L PGGYLKLIELGL DCV  IDAQR+LGY L+KDGK   +++PLE F S VAGR+FHNGRFVQ +R+K  +L NV LEQGTVTSL+EE+G +KGV+Y+++ G    ++APLTIVCDGCFSNLRRSLC PKVD+PS FVG +L NC LP  N+G +++  PSPI+ Y
Sbjct:  137 LAHTLGKEGRRVHVIERDFSEQDRIVGELLQPGGYLKLIELGLEDCVKKIDAQRVLGYVLFKDGKHTKLAYPLETFDSDVAGRSFHNGRFVQRMREKALTLSNVRLEQGTVTSLLEEHGTIKGVRYRTKEGNEFRSFAPLTIVCDGCFSNLRRSLCKPKVDVPSTFVGLVLENCELPFANHGHVVLGDPSPILMY 331          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene epoxidase 5 OS=Arabidopsis thaliana GN=SQE5 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 5.609e-67
Identity = 111/197 (56.35%), Postives = 139/197 (70.56%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEK--FQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERDL  P R+ GE + PGG L L +LGL DC++ IDAQ+  G T+YKDGKEA  SFP++   F    + R+FHNGRFVQ LR+K +SL NV LE+GTV SLIEE G++KGV YK+ +G+  TA APLT+VCDGC+SNLRRSL     ++ SY VGFI  NC L       +I++ PS  + Y
Sbjct:   60 LAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPSFTMLY 256          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene epoxidase 6 OS=Arabidopsis thaliana GN=SQE6 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.218e-65
Identity = 110/198 (55.56%), Postives = 137/198 (69.19%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEK--FQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSP-KVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERD+  P RM GE + PGG L L +LGL DC++DIDAQ+  G  +YKDGKEA   FP++   F    + R+FHNGRFVQ LR+K  SL NV LE+GTV SL+EE G+VKGV YK++ G+  TA APLT+VCDGC+SNLRRSL      +I SY VG+I  NC L       +I++ PS  + Y
Sbjct:   60 LAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCLEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRKAFSLSNVRLEEGTVKSLLEEKGVVKGVTYKNKEGEETTALAPLTVVCDGCYSNLRRSLNDDNNAEIMSYIVGYISKNCRLEEPEKLHLILSKPSFTMVY 257          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.224e-65
Identity = 108/196 (55.10%), Postives = 138/196 (70.41%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLE-KFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERD+  P RM GE + PGG L L +LGL DC+++IDAQ+  G  L+KDGKE    FP++  F    +GR FHNGRFVQ LR+K +SL NV LE+GTV SLIEE G+VKGV YK+ SG+  T++APLT+VCDGC SNLRRSL     ++ +Y +G+I  NC L   +   +I+A PS  + Y
Sbjct:   63 LAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCLEEIDAQKSTGIRLFKDGKETVACFPVDTNFPYEPSGRFFHNGRFVQRLRQKASSLPNVRLEEGTVRSLIEEKGVVKGVTYKNSSGEETTSFAPLTVVCDGCHSNLRRSLNDNNAEVTAYEIGYISRNCRLEQPDKLHLIMAKPSFAMLY 258          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 6.996e-62
Identity = 104/196 (53.06%), Postives = 135/196 (68.88%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEK-FQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERD+  P RM GE + PGG L L +LGL DC++ ID Q   G  +YKDG++A VSFP +  F     GR F+NGRFVQ LR+K +SL  V LE+GTV SLIEE G++KGV YK+ +G+  TA+APLT+VCDGC+SNLRRS+     ++ SY VG++  NC L       +I++ PS  + Y
Sbjct:   62 LAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAVYKDGQKALVSFPEDNDFPYEPTGRAFYNGRFVQRLRQKASSLPTVQLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAFAPLTVVCDGCYSNLRRSVNDNNAEVISYQVGYVSKNCQLEDPEKLKLIMSKPSFTMLY 257          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene epoxidase 4 OS=Arabidopsis thaliana GN=SQE4 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 9.185e-61
Identity = 104/196 (53.06%), Postives = 129/196 (65.82%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEK-FQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERDL  P R  GE +  GG   L +LGL DC++DIDAQ      +YKDGK A + FP +K F     GR   NGR VQ LR+K ASL NV LE+GTV SLIEE G+VKGV YK+ +G+ +TA+APLT+VCDGC+SNLRRSL     ++ SY VG++  N  L   +   +I + P   V Y
Sbjct:   58 LAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQKAASLSNVQLEEGTVKSLIEEEGVVKGVTYKNSAGEEITAFAPLTVVCDGCYSNLRRSLVDNTEEVLSYMVGYVTKNSRLEDPHSLHLIFSKPLVCVIY 253          
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 2.147e-48
Identity = 89/198 (44.95%), Postives = 126/198 (63.64%), Query Frame = -1
Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLY--KDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKS-ESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LA  L +DGR+V VIERDL  P+R+ GE L PGGY  L +LGL D V+ +DAQ + GY ++  +   E  + +PL +     +GR FH+GRF+ SLRK   +  N    +G V  L+EE+ +V GVQYK  E+G +   +APLT+V DG FS  R+SL S KV + S+FVGF++ N      N+  +I+A+PSP++ Y
Sbjct:  138 LAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAEPNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIY 335          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2RUX0_GOSRA4.219e-12494.65Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0D2TFL8_GOSRA5.808e-12394.65Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0D2V784_GOSRA5.361e-11878.63Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0N3I3_GOSAR1.504e-11272.73Squalene monooxygenase OS=Gossypium arboreum GN=F3... [more]
A0A061DWU9_THECC3.164e-10272.51Squalene monooxygenase, putative OS=Theobroma caca... [more]
A0A0D2V604_GOSRA5.557e-10178.19Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A061E4U9_THECC5.060e-10066.93Squalene monooxygenase OS=Theobroma cacao GN=TCM_0... [more]
A0A0D2TQH6_GOSRA4.908e-9877.66Uncharacterized protein OS=Gossypium raimondii GN=... [more]
K4A894_SETIT7.236e-9872.82Uncharacterized protein OS=Setaria italica GN=Si03... [more]
B8A3C6_MAIZE1.595e-9772.31Uncharacterized protein OS=Zea mays PE=2 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ERG16_ARATH2.395e-9468.21Squalene epoxidase 3 OS=Arabidopsis thaliana GN=SQ... [more]
ERG1_PANGI5.592e-9169.23Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG14_ARATH5.347e-8964.62Squalene epoxidase 1 OS=Arabidopsis thaliana GN=SQ... [more]
ERG15_ARATH9.754e-8864.10Squalene epoxidase 2, mitochondrial OS=Arabidopsis... [more]
ERG11_ARATH5.609e-6756.35Squalene epoxidase 5 OS=Arabidopsis thaliana GN=SQ... [more]
ERG12_ARATH1.218e-6555.56Squalene epoxidase 6 OS=Arabidopsis thaliana GN=SQ... [more]
ERG12_BRANA6.224e-6555.10Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG11_BRANA6.996e-6253.06Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG13_ARATH9.185e-6153.06Squalene epoxidase 4 OS=Arabidopsis thaliana GN=SQ... [more]
ERG1_HUMAN2.147e-4844.95Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00420RNGMNOXGNASEcoord: 41..63
score: 39.28
coord: 190..205
score: 31.25
NoneNo IPR availablePANTHERPTHR10835SQUALENE MONOOXYGENASEcoord: 4..248
NoneNo IPR availablePANTHERPTHR10835:SF1SQUALENE EPOXIDASE 2, MITOCHONDRIAL-RELATEDcoord: 4..248
IPR006076FAD dependent oxidoreductasePFAMPF01266DAOcoord: 41..73
e-value: 1.2E-5
score: 25.0
IPR013698Squalene epoxidasePFAMPF08491SEcoord: 191..248
e-value: 3.8E-19
score: 68.7
IPR023753FAD/NAD(P)-binding domainGENE3D3.50.50.60coord: 40..207
e-value: 4.3E-20
score: 71.6
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 41..211

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001666 ID=g.arboreum_cottongen_reftransV1_0001666; Name=g.arboreum_cottongen_reftransV1_0001666; organism=Gossypium arboreum; type=contig; length=750bp
ATAAAATACGATTGGTGAAGGGTGTGCTACTATAATAGCTCCATAATTTT
TAATTGGTAGGTTACAGTTCGTCAGTATAAAACCAACAAAATAAGAGGGT
ATATCAACCTTAGGAGAGCAAAGAGAGCGTCTCAAATTTGAGAAACAACC
ATCGCATACAATTGTGAGAGGAGCGTAAGCTGTCAACACTTGACCACTCT
CACTTTTGTACTGCACTCCTTTGACAATACCATTTTCTTCAATCAGAGAT
GTAACTGTCCCTTGTTCTAAACTTACGTTGTGAAGAGATGCAACTTTTTT
CCGCAAGCTTTGAACGAAACGACCATTATGAAATGTTCTTCCTGCAACAT
GAGATTGAAACTTTTCTAAAGGAAAAGATACGTGAGCCTCCTTTCCATCC
TTGTATAGAGTATAACCCAAAAGTCGTTGCGCATCAATATCATCTACACA
ATCCACGAGGCCTAATTCAATTAACTTTAAGTAGCCCCCTGGTATTAGAC
TTTCACCAGCCATTCTATTAGGCGCATTTAAGTCCCTTTCTATCACTCGT
ACTCGACGTCCATCCTTTCCAAGAGAATAGGCAAGAGCAGCACCGGCAAC
ACCGGCGCCGACTATGATAATATCCGCAGTGCCAACACCCTCACTTCCAG
TTTTGTTTACACTGTTTTTCTTTGGAAACTCCATTGAAGCTACTCTGTTT
AGCTTCCTCTGTCCCCCAAATCTGATTAGGGAATTGCAGTACAAGAAAAC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006076FAD-dep_OxRdtase
IPR013698Squalene_epoxidase
IPR023753FAD/NAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114obsolete oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0050660flavin adenine dinucleotide binding
GO:0004506squalene monooxygenase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral to membrane