g.arboreum_cottongen_reftransV1_0003394, g.arboreum_cottongen_reftransV1_0003394 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003394
Unique Nameg.arboreum_cottongen_reftransV1_0003394
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0003394:1..1293 .
Chr6:20222490..20223894 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: W9R7U5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017473 PE=4 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.775e-79
Identity = 156/235 (66.38%), Postives = 180/235 (76.60%), Query Frame = 1
Query:  133 KPAEIKNLQIMIASKDD-----NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEF-PNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNS 816
            KPAEIK+ QI+IA+K+D      K+QLAPKRSSNKDRHKKVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAG+SV  QGNSVS+ LHT+M  LG       R NWA++ GNLGRS    G W    G GSG    S QST++  FG EN+N +   +GF G +F P +N+G VSF++++ G N QVPGLELGLSQD H  V NS
Sbjct:    5 KPAEIKDFQIIIANKEDANNNTKKQQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGSSVSEQGNSVSSALHTRMEDLG-------RANWAVMSGNLGRSH---GIWPGIGGFGSGFFPNSGQSTTS--FGGENANMLLPKFGFHGFDFPPGVNLGAVSFNTVIGGGNQQVPGLELGLSQDGHIRVLNS 227          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: B9N0Z2_POPTR (TCP family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0017s09820g PE=4 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.297e-78
Identity = 165/281 (58.72%), Postives = 198/281 (70.46%), Query Frame = 1
Query:  106 LTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRS-QIPS-GAWSSSNGIGSGLVQASEQST--SASNFGNE---NSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVTDKDNSQGSKQ 927
            L P   EN K AEIK+ QI++A K++ KKQLAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAG ++  QG S+SAGLH K+     + S+ R +WAMLGGNLGR  Q+ S G W    G G    Q+S  +T  S +N  +E    S+++ +N GF G + P  N+G +S +S+L   + Q+PGLELGLSQD H GV + QA S  Y Q+GQ     R    QQ    KD+SQGS Q
Sbjct:   51 LQPNMGEN-KAAEIKDFQIVVADKEEQKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGAISQQGASLSAGLHQKIDDIGESSSR-RTSWAMLGGNLGRPHQVTSAGLWPPVGGYG---FQSSSNTTGPSTTNIVSEGGGGSSYLQKN-GFSGFDMPGNNIGPMSLTSILGVGSQQLPGLELGLSQDGHIGVLSPQALSQIYQQMGQ----ARVQQHQQQNPSKDDSQGSGQ 321          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A0B0MX67_GOSAR (Transcription factor TCP20-like protein OS=Gossypium arboreum GN=F383_31403 PE=4 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.611e-77
Identity = 150/249 (60.24%), Postives = 181/249 (72.69%), Query Frame = 1
Query:  127 NNKPAEIKNLQIMIASKDDNKKQ-LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM---GLGACTGSKDRNNWAMLGGNLGR-SQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR 858
             +K AE K+  +++A K++ KKQ LAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALAAAGASV  QG S+SAGLH KM   G  +      R NW M+GGNLGR   + +G+W   +G G      S  + S +N G+E SN++ Q  GF G +     MG +SF+S+L  +N Q+PGLELGLSQ+ HFGV N QA +  Y Q+GQ R
Sbjct:    3 ESKAAETKD--VVVADKEEGKKQQLAPKRSSNKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAGASVSQQGGSLSAGLHQKMEDLGGSSVGSGSSRTNWGMVGGNLGRPHHVATGSWPPVSGYGF----QSSSAPSTTNLGSEGSNYL-QKIGFPGFDLTATTMGQMSFTSMLGAANQQLPGLELGLSQEGHFGVLNPQALTQIYQQMGQAR 244          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A0D2UR16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G086900 PE=4 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.706e-77
Identity = 150/249 (60.24%), Postives = 181/249 (72.69%), Query Frame = 1
Query:  127 NNKPAEIKNLQIMIASKDDNKKQ-LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM---GLGACTGSKDRNNWAMLGGNLGR-SQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR 858
             +K AE K+  +++A K++ KKQ LAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALAAAGASV  QG S+SAGLH KM   G  +      R NW M+GGNLGR   + +G+W   +G G      S  + S +N G+E SN++ Q  GF G +     MG +SF+S+L  +N Q+PGLELGLSQ+ HFGV N QA +  Y Q+GQ R
Sbjct:   28 ESKTAETKD--VVVADKEEGKKQQLAPKRSSNKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAGASVSQQGGSLSAGLHQKMEDLGGSSVGSGSSRTNWGMVGGNLGRPPHVAAGSWPPVSGYGF----QSSSAPSTTNLGSEGSNYL-QKIGFPGFDLTATTMGQMSFTSMLGAANQQLPGLELGLSQEGHFGVLNPQALTQIYQQMGQAR 269          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: W1PF11_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00016p00227430 PE=4 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.246e-76
Identity = 158/307 (51.47%), Postives = 195/307 (63.52%), Query Frame = 1
Query:   85 PQEVPTC-----LTPQKAENN-------KPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMGLGACTGSK-----DRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGS------NPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIV---TDKDNSQGSKQ 927
            P EVP       L P+K EN+       +P ++  +++M + K++ KKQLAPKRSSNKDRH KVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASAL              SAG        A +GSK     +R NW M+  NL RS + S  W S  G GSG +  S  + S+SN G+EN++ + +  GF G E P+ ++G ++ SS+L  +      N Q+PGLELGLS D H GV ++QA S FY QIGQ RGG      Q      + KD+SQGS+Q
Sbjct:   10 PHEVPKFHQALGLQPEKRENSNSTKGGGEPRDLPIVEVM-SEKEEAKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASAL-------------ASAGPMANQASSASSGSKMEELGNRANWTMV-SNLHRSPLTSSLWPSVGGFGSGFLHHS--APSSSNLGSENASFVPR-IGFSGFEMPSSHLGHMNLSSILGNTSGGGNHNQQLPGLELGLSPDGHIGVLSTQALSQFYQQIGQSRGGSMHHQHQNQQQGPSSKDDSQGSRQ 298          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.497e-65
Identity = 133/249 (53.41%), Postives = 166/249 (66.67%), Query Frame = 1
Query:  124 ENNKPA-EIKNLQIMIASKDD-------NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXX-XQGNSVSAGLHTKMGLGACTGSKDRN-NWAMLGGN-LGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFY 837
            EN KP  EIK+ QI++++ D        N+ QL PKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALA++ A+    QG S++AGL     L   + S  R  NW + GG  + RS +P+G W +  G GSG+      S  A               GF G +FP +  G +SF+S+L G++ Q+PGLELGLSQ+ + GV N Q+F+  Y
Sbjct:   39 ENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLMSEGAG-----------YRIGFPGFDFPGV--GHMSFASILGGNHNQMPGLELGLSQEGNVGVLNPQSFTQIY 274          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.340e-34
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = 1
Query:  154 LQIMIASKDDNK--KQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            L I+  + + N   K+  PKR+S KDRH KV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQ+EP++IAATGTGTIP
Sbjct:   29 LAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIP 113          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.983e-33
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1
Query:  205 KRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            KR+S KDRH KVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQ+EPS+IAATGTGTIP
Sbjct:  113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIP 178          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.070e-31
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1
Query:  208 RSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            + S KDRH KVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQ+EP+I+AATGTGTIP
Sbjct:   57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP 121          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.049e-31
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1
Query:  205 KRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            KR+S KDRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLL+ +EP+IIAATGTGT+P
Sbjct:   71 KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVP 136          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.642e-31
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 1
Query:  160 IMIASKDDN-----KKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +M+  ++D      K + APKR ++KDRH KV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLL+++EP+II ATGTGT+P
Sbjct:   33 MMLMKQEDGYLQPVKTKPAPKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVP 118          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.749e-31
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  163 MIASKDDNKKQL-APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +I  +  NK  L A K+  +KDRH KVDGRGRRIRMP +CAAR+FQLTRELGHKSDG+TI+WLL+Q+EPSIIAATGTGT P
Sbjct:   12 IIVEQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTP 92          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.982e-31
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1
Query:  208 RSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +   KDRH KVDGRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQ+EP+IIA+TGTGTIP
Sbjct:   60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIP 124          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.019e-30
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1
Query:  217 NKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            N+DRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQSEP+IIAATGTGT+P
Sbjct:   75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136          
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.019e-30
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1
Query:  217 NKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            N+DRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQSEP+IIAATGTGT+P
Sbjct:   75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9R7U5_9ROSA3.775e-7966.38Uncharacterized protein OS=Morus notabilis GN=L484... [more]
B9N0Z2_POPTR2.297e-7858.72TCP family transcription factor family protein OS=... [more]
A0A0B0MX67_GOSAR1.611e-7760.24Transcription factor TCP20-like protein OS=Gossypi... [more]
A0A0D2UR16_GOSRA2.706e-7760.24Uncharacterized protein OS=Gossypium raimondii GN=... [more]
W1PF11_AMBTC7.246e-7651.47Uncharacterized protein OS=Amborella trichopoda GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP20_ARATH3.497e-6553.41Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP15_ARATH5.340e-3471.76Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP14_ARATH5.983e-3389.39Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
TCP8_ARATH1.070e-3186.15Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP9_ARATH2.049e-3183.33Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]
TCP19_ARATH3.642e-3166.28Transcription factor TCP19 OS=Arabidopsis thaliana... [more]
TCP21_ARATH7.749e-3171.60Transcription factor TCP21 OS=Arabidopsis thaliana... [more]
TCP22_ARATH8.982e-3183.08Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
PCF2_ORYSJ2.019e-3088.71Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI2.019e-3088.71Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005333Transcription factor, TCPPFAMPF03634TCPcoord: 61..177
e-value: 7.6E-31
score: 107.6
NoneNo IPR availablePANTHERPTHR31072:SF4TRANSCRIPTION FACTOR TCP20-RELATEDcoord: 28..149
NoneNo IPR availablePANTHERPTHR31072FAMILY NOT NAMEDcoord: 28..149
IPR017887Transcription factor TCP subgroupPROSITEPS51369TCPcoord: 62..116
score: 27.613

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003394 ID=g.arboreum_cottongen_reftransV1_0003394; Name=g.arboreum_cottongen_reftransV1_0003394; organism=Gossypium arboreum; type=contig; length=1293bp
CGCCAATCAAGGAGGCCCCATAATTGAGTTTACATGGAGCCTAAGGGCAA
GAGCAAGGGCAAGGGCAAGGGCTCAAATCATCATCCACAAGAGGTGCCCA
CCTGCTTGACTCCTCAGAAAGCAGAGAACAATAAACCTGCAGAAATAAAA
AACTTGCAAATCATGATTGCGAGCAAAGATGATAACAAGAAGCAACTAGC
TCCCAAAAGAAGCTCAAACAAAGACAGGCACAAGAAAGTAGATGGCAGAG
GTAGAAGAATAAGGATGCCTGCTCTGTGCGCCGCCAGGATTTTCCAATTG
ACCCGAGAATTGGGTCACAAATCCGATGGCGAGACCATTCAGTGGTTGTT
GCAGCAATCGGAACCATCTATCATTGCTGCAACTGGAACTGGGACGATTC
CCGCTTCAGCTCTGGCGGCTGCTGGAGCCTCTGTTTGTGCGCAGGGGAAC
TCTGTCTCTGCTGGTTTGCATACCAAAATGGGACTGGGGGCATGTACTGG
GTCCAAAGATAGGAATAATTGGGCAATGTTGGGTGGTAATTTAGGAAGAT
CCCAAATCCCAAGTGGGGCATGGTCTTCTAGTAATGGAATTGGATCAGGG
CTTGTTCAAGCTTCAGAGCAATCCACATCAGCTTCAAATTTTGGGAATGA
AAACTCAAATCATATCCACCAAAACTATGGGTTCCAGGGGCTTGAATTTC
CAAATATTAATATGGGTTTTGTGAGTTTTTCGTCGCTGCTCAACGGTAGT
AACCCCCAGGTTCCAGGTTTGGAGCTTGGGCTTTCACAGGATCCGCATTT
TGGTGTGTCTAATTCCCAAGCTTTTAGCCACTTTTACCCGCAGATTGGGC
AGCAGCGAGGTGGTGTACGTCCCTTGAATCAGCAGCAGATTGTTACTGAT
AAGGATAATTCCCAGGGATCCAAGCAGTAGCTAGTCTTTCTAAACAACAA
CAAGATGATGACGACGACTGGTCAACCCGATTATATATTGCGTTCCTTGA
CCAGAAACTAAAGGTAAAATGATTTCTGAACAGTTCAATTTGCTGGGATG
AGTTGTGAAGAGAATAACAATGGCCAGGAAATTGGATTTACTTCTGCTGC
TTGTTAAACATTGATGGATTTAGTTTGGTGTTTGTTAAACTGAACTTTGA
GGTGTGTTTATTATTGTTTAGTACAATTTTGTCGGGCAAATATCACTTGT
TTGCTCTATATTTCATGTCTAAGCGAAGTAGATTGGTATCTTAAAGCAAT
AGAGATGAGGGGGATTTCCATTGTTTTCAACTTTAAAGTAGCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005333Transcription_factor_TCP
IPR017887TF_TCP_subgr