g.arboreum_cottongen_reftransV1_0003394, g.arboreum_cottongen_reftransV1_0003394 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: W9R7U5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017473 PE=4 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 3.775e-79 Identity = 156/235 (66.38%), Postives = 180/235 (76.60%), Query Frame = 1 Query: 133 KPAEIKNLQIMIASKDD-----NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEF-PNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNS 816 KPAEIK+ QI+IA+K+D K+QLAPKRSSNKDRHKKVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAG+SV QGNSVS+ LHT+M LG R NWA++ GNLGRS G W G GSG S QST++ FG EN+N + +GF G +F P +N+G VSF++++ G N QVPGLELGLSQD H V NS Sbjct: 5 KPAEIKDFQIIIANKEDANNNTKKQQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGSSVSEQGNSVSSALHTRMEDLG-------RANWAVMSGNLGRSH---GIWPGIGGFGSGFFPNSGQSTTS--FGGENANMLLPKFGFHGFDFPPGVNLGAVSFNTVIGGGNQQVPGLELGLSQDGHIRVLNS 227
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: B9N0Z2_POPTR (TCP family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0017s09820g PE=4 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 2.297e-78 Identity = 165/281 (58.72%), Postives = 198/281 (70.46%), Query Frame = 1 Query: 106 LTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRS-QIPS-GAWSSSNGIGSGLVQASEQST--SASNFGNE---NSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVTDKDNSQGSKQ 927 L P EN K AEIK+ QI++A K++ KKQLAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAG ++ QG S+SAGLH K+ + S+ R +WAMLGGNLGR Q+ S G W G G Q+S +T S +N +E S+++ +N GF G + P N+G +S +S+L + Q+PGLELGLSQD H GV + QA S Y Q+GQ R QQ KD+SQGS Q Sbjct: 51 LQPNMGEN-KAAEIKDFQIVVADKEEQKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGAISQQGASLSAGLHQKIDDIGESSSR-RTSWAMLGGNLGRPHQVTSAGLWPPVGGYG---FQSSSNTTGPSTTNIVSEGGGGSSYLQKN-GFSGFDMPGNNIGPMSLTSILGVGSQQLPGLELGLSQDGHIGVLSPQALSQIYQQMGQ----ARVQQHQQQNPSKDDSQGSGQ 321
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A0B0MX67_GOSAR (Transcription factor TCP20-like protein OS=Gossypium arboreum GN=F383_31403 PE=4 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 1.611e-77 Identity = 150/249 (60.24%), Postives = 181/249 (72.69%), Query Frame = 1 Query: 127 NNKPAEIKNLQIMIASKDDNKKQ-LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM---GLGACTGSKDRNNWAMLGGNLGR-SQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR 858 +K AE K+ +++A K++ KKQ LAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALAAAGASV QG S+SAGLH KM G + R NW M+GGNLGR + +G+W +G G S + S +N G+E SN++ Q GF G + MG +SF+S+L +N Q+PGLELGLSQ+ HFGV N QA + Y Q+GQ R Sbjct: 3 ESKAAETKD--VVVADKEEGKKQQLAPKRSSNKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAGASVSQQGGSLSAGLHQKMEDLGGSSVGSGSSRTNWGMVGGNLGRPHHVATGSWPPVSGYGF----QSSSAPSTTNLGSEGSNYL-QKIGFPGFDLTATTMGQMSFTSMLGAANQQLPGLELGLSQEGHFGVLNPQALTQIYQQMGQAR 244
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A0D2UR16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G086900 PE=4 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 2.706e-77 Identity = 150/249 (60.24%), Postives = 181/249 (72.69%), Query Frame = 1 Query: 127 NNKPAEIKNLQIMIASKDDNKKQ-LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM---GLGACTGSKDRNNWAMLGGNLGR-SQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR 858 +K AE K+ +++A K++ KKQ LAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALAAAGASV QG S+SAGLH KM G + R NW M+GGNLGR + +G+W +G G S + S +N G+E SN++ Q GF G + MG +SF+S+L +N Q+PGLELGLSQ+ HFGV N QA + Y Q+GQ R Sbjct: 28 ESKTAETKD--VVVADKEEGKKQQLAPKRSSNKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAGASVSQQGGSLSAGLHQKMEDLGGSSVGSGSSRTNWGMVGGNLGRPPHVAAGSWPPVSGYGF----QSSSAPSTTNLGSEGSNYL-QKIGFPGFDLTATTMGQMSFTSMLGAANQQLPGLELGLSQEGHFGVLNPQALTQIYQQMGQAR 269
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: W1PF11_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00016p00227430 PE=4 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 7.246e-76 Identity = 158/307 (51.47%), Postives = 195/307 (63.52%), Query Frame = 1 Query: 85 PQEVPTC-----LTPQKAENN-------KPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMGLGACTGSK-----DRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGS------NPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIV---TDKDNSQGSKQ 927 P EVP L P+K EN+ +P ++ +++M + K++ KKQLAPKRSSNKDRH KVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASAL SAG A +GSK +R NW M+ NL RS + S W S G GSG + S + S+SN G+EN++ + + GF G E P+ ++G ++ SS+L + N Q+PGLELGLS D H GV ++QA S FY QIGQ RGG Q + KD+SQGS+Q Sbjct: 10 PHEVPKFHQALGLQPEKRENSNSTKGGGEPRDLPIVEVM-SEKEEAKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASAL-------------ASAGPMANQASSASSGSKMEELGNRANWTMV-SNLHRSPLTSSLWPSVGGFGSGFLHHS--APSSSNLGSENASFVPR-IGFSGFEMPSSHLGHMNLSSILGNTSGGGNHNQQLPGLELGLSPDGHIGVLSTQALSQFYQQIGQSRGGSMHHQHQNQQQGPSSKDDSQGSRQ 298
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 3.497e-65 Identity = 133/249 (53.41%), Postives = 166/249 (66.67%), Query Frame = 1 Query: 124 ENNKPA-EIKNLQIMIASKDD-------NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXX-XQGNSVSAGLHTKMGLGACTGSKDRN-NWAMLGGN-LGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFY 837 EN KP EIK+ QI++++ D N+ QL PKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALA++ A+ QG S++AGL L + S R NW + GG + RS +P+G W + G GSG+ S A GF G +FP + G +SF+S+L G++ Q+PGLELGLSQ+ + GV N Q+F+ Y Sbjct: 39 ENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLMSEGAG-----------YRIGFPGFDFPGV--GHMSFASILGGNHNQMPGLELGLSQEGNVGVLNPQSFTQIY 274
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.340e-34 Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = 1 Query: 154 LQIMIASKDDNK--KQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 L I+ + + N K+ PKR+S KDRH KV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQ+EP++IAATGTGTIP Sbjct: 29 LAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIP 113
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 5.983e-33 Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1 Query: 205 KRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 KR+S KDRH KVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQ+EPS+IAATGTGTIP Sbjct: 113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIP 178
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.070e-31 Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1 Query: 208 RSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 + S KDRH KVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQ+EP+I+AATGTGTIP Sbjct: 57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP 121
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.049e-31 Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 Query: 205 KRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 KR+S KDRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLL+ +EP+IIAATGTGT+P Sbjct: 71 KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVP 136
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.642e-31 Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 1 Query: 160 IMIASKDDN-----KKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 +M+ ++D K + APKR ++KDRH KV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLL+++EP+II ATGTGT+P Sbjct: 33 MMLMKQEDGYLQPVKTKPAPKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVP 118
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 7.749e-31 Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 Query: 163 MIASKDDNKKQL-APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 +I + NK L A K+ +KDRH KVDGRGRRIRMP +CAAR+FQLTRELGHKSDG+TI+WLL+Q+EPSIIAATGTGT P Sbjct: 12 IIVEQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTP 92
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 8.982e-31 Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1 Query: 208 RSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 + KDRH KVDGRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQ+EP+IIA+TGTGTIP Sbjct: 60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIP 124
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.019e-30 Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 Query: 217 NKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 N+DRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQSEP+IIAATGTGT+P Sbjct: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.019e-30 Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 Query: 217 NKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402 N+DRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQSEP+IIAATGTGT+P Sbjct: 75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 17
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003394 ID=g.arboreum_cottongen_reftransV1_0003394; Name=g.arboreum_cottongen_reftransV1_0003394; organism=Gossypium arboreum; type=contig; length=1293bpback to top |