g.arboreum_cottongen_reftransV1_0003394, g.arboreum_cottongen_reftransV1_0003394 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003394
Unique Nameg.arboreum_cottongen_reftransV1_0003394
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0003394:1..1293 .
Chr6:20222490..20223894 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: B9RH46_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1447120 PE=4 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 2.792e-88
Identity = 174/275 (63.27%), Postives = 201/275 (73.09%), Query Frame = 1 
Query:  130 NKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM----GLGACTGSKDRNNWAMLGGNLGRSQ--IPSGAWSSSNGIGSGLVQASEQSTS--ASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNG-SNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVTDKDNSQGSKQ 927
            NKPAEIK+ QI+IA K++ KKQLAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASAL AAG SV  QG S+SAGLH K+    G  + T S  R +WAM+GGNLGR      +G W    G G    Q+S  +T    SN GNE+S+++ Q  GF G + P  NMG +SF+S+L G SN Q+PGLELGLSQD H GV NSQAFS  Y Q+GQ R   +  +Q Q    KD+SQGS Q
Sbjct:   50 NKPAEIKDFQIVIADKEEQKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALVAAGGSVSQQGTSLSAGLHQKIDDLGGSSSITSSNSRTSWAMVGGNLGRPHHVATTGLWPPVGGFG---FQSSSTTTGPVTSNLGNESSSYL-QKIGFPGFDLPGNNMGPMSFTSILGGTSNQQIPGLELGLSQDGHIGVLNSQAFSQIYQQMGQARVQHQHQHQHQQNPAKDDSQGSGQ 320
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: M5WYR6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009925mg PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.844e-86
Identity = 160/247 (64.78%), Postives = 184/247 (74.49%), Query Frame = 1 
Query:  127 NNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMG--LGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLL-NGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR 858
             NKPAEIK+ QI+IA K++ KKQLAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASAL AAG SV  QG S+SAGLH K+    G+  GS  R +WAM+GGNLGR  + +G W       S     S    S +N G+E+SN++ Q  GF G + P  NMG +SF+S+L  GSN Q+PGLELGLSQD H GV NSQA S  Y Q+G  R
Sbjct:    3 ENKPAEIKDFQIVIADKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALTAAGGSVSQQGTSLSAGLHQKIDELGGSSIGSGSRTSWAMVGGNLGRPHVATGLWPPV----SSFGFQSSSGPSTTNLGSESSNYM-QKIGFPGFDLPVSNMGPMSFTSILGGGSNQQLPGLELGLSQDGHIGVLNSQALSQIYQQMGHAR 244
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A067L058_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26810 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.257e-85
Identity = 164/271 (60.52%), Postives = 192/271 (70.85%), Query Frame = 1 
Query:  130 NKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMG-LGACTGSKDRNNWAMLGGNLGRSQ--IPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVTD--KDNSQGSKQ 927
            NKPAEIK+ QI+IA K++ KKQL PKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGT+PAS LAAAG SV   G S+SAGL+ K+  LG  + S  R +WAM+GGNLGR      +G W    G   G   +S    + +N G+E+S    Q  GF G + P  NMG +SF+S+L GSN Q+PGLELGLSQD H GV N QA S  Y Q+GQ R   +   QQ    +  KD+SQGS Q
Sbjct:   47 NKPAEIKDFQIVIADKEEQKKQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTVPASFLAAAGGSVSQPGTSLSAGLNQKIDELGGSSSS--RTSWAMVGGNLGRPHHVATTGLWPPVGGF--GFQSSSTTGPATTNLGSESSTSYLQKIGFPGFDLPGNNMGPMSFTSILAGSNQQIPGLELGLSQDGHIGVLNPQALSQIYQQMGQARVHQQQQQQQHQQQNPAKDDSQGSGQ 313
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A061EKM4_THECC (Teosinte branched 1 OS=Theobroma cacao GN=TCM_017259 PE=4 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.223e-84
Identity = 157/249 (63.05%), Postives = 186/249 (74.70%), Query Frame = 1 
Query:  127 NNKPAEIKNLQIMIASKDDNKKQ-LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM---GLGACTGSKDRNNWAMLGGNLGRS-QIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR 858
             NKPAEIK+ QI+IA K++ KKQ LAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALAAAG SV  QG S+SAGLH KM   G  +      R +WAM+GGNLGR   + +G W   +G G      S    S +N G+E+SN++ Q  GF G + P  NMG +SF+S+L G++ Q+PGLELGLSQD H G+ N+QA S  Y Q+GQ R
Sbjct:   44 ENKPAEIKDFQIVIADKEEGKKQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAGGSVSQQGASLSAGLHQKMEDLGGSSIGSGSSRTSWAMVGGNLGRPHHVATGLWPPVSGYGF----QSSSGPSTTNLGSESSNYL-QKIGFPGFDLPATNMGQMSFTSILGGASQQLPGLELGLSQDGHIGLLNTQALSQIYQQMGQAR 287
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: M5XSE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010032mg PE=4 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.655e-84
Identity = 162/261 (62.07%), Postives = 197/261 (75.48%), Query Frame = 1 
Query:  130 NKPAEIKNLQIMIASKDD-NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQ---GNSVSAGLHTKMG--LGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSS--NGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQ 888
            NKPA+IK+LQI+ A+KDD NKK LAPKRSSNKDRHKKVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GT+PASALAAAG+SV  Q    +SV++GLHT+M   +    GS+   NWA    ++GRS + SG W     +G+ SG  Q S Q+T   NFG+EN N +   +GF G + P +N+G + F ++L+GSN QVPGLELGLSQD H GV +SQA + F+   GQ+ GGV   NQQQ
Sbjct:    4 NKPAQIKDLQILKANKDDENKKHLAPKRSSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTVPASALAAAGSSVSEQGSSVSSVTSGLHTRMEGLIRPSVGSEGSANWAF---HMGRSNVASGVWPLPFLSGVRSGFDQNSGQAT--VNFGSENLNIMQHKFGFHGFDVPGMNLGSMGFPTILSGSNQQVPGLELGLSQDGHIGVVSSQALTQFHQHKGQRPGGVASFNQQQ 259
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: B9GF50_POPTR (TCP family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0001s33470g PE=4 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 2.813e-83
Identity = 166/276 (60.14%), Postives = 194/276 (70.29%), Query Frame = 1 
Query:  127 NNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLGACTGSKDRNNWAMLGGNLGRSQ--IPSGAWSSSNGIGSGLVQASEQST--SASNFGNENS----NHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVTDKDNSQGSKQ 927
            +NKPAEIK+ QI++A K++ KKQLAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAG ++  QG S+SAGLH K+  LG  + S  R +WAMLGGNLGR      +G W    G G    Q+S  ST  S +N G E +    +   Q  GF G + P  NMG +SF+S+L G   Q+PGLELGLSQD H GV + QA +  Y Q+G  R  V     QQ    KD+SQGS Q
Sbjct:   52 DNKPAEIKDFQIVVADKEEQKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGAISQQGASLSAGLHQKIDDLGGSSSS--RASWAMLGGNLGRPHHVTTAGLWPPVGGYG---FQSSSNSTGPSTTNIGTEAAAAGGSSYLQKLGFPGFDLPGNNMGPMSFTSILGGGTQQLPGLELGLSQDGHIGVLSPQALNQIYQQMGHAR--VHQQQHQQQNPSKDDSQGSGQ 320
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: V7CWP0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G089100g PE=4 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.854e-82
Identity = 164/273 (60.07%), Postives = 192/273 (70.33%), Query Frame = 1 
Query:  130 NKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMGL--GACTGS-KDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFP--NINMGFVSFSSLLNGSNP-QVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQ-QRGGVRPLNQQQIVTDKDNSQGSKQ 927
            NKPAE+K+ QI++A KD++KKQLAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAG SV  QG S+S+GLH K+    GA  GS   R +W M+GGNLGR  + +G W       SG    +    S +  G E+SN++ Q  GF G + P    NMG +SF+S+L G    Q+PGLELGLSQD H GV N  A S  Y Q+GQ  R   +   Q Q    KD+SQGS Q
Sbjct:   44 NKPAEMKDFQIVVAEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSPQGASLSSGLHQKIDELGGANMGSGSSRTSWQMVGGNLGRPHVATGLWPPHV---SGFGFQTSSGPSNATLGTESSNYL-QKIGFPGFDLPAAATNMGHMSFTSILGGGGTQQMPGLELGLSQDGHIGVLNPLALSQIYQQMGQATRVQQQQQQQHQQTPAKDDSQGSGQ 312
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: B9GMN9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13500g PE=4 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 2.663e-81
Identity = 160/236 (67.80%), Postives = 177/236 (75.00%), Query Frame = 1 
Query:   76 NHHPQEVPTCLTP-QKA---ENN------KPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLG-ACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQ--NYGFQGLEFPNINMGFVSFSSLL 741
            NHH  +VP+ L P QKA   ENN      +PAEIK+ QIMI ++D NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELG+KSDGETIQWLLQQ+EPSIIAATGTGT PASALA AGASV  QGNSVS GLHTKM GLG A  GS+DR NW M+  NLGRS + SG W S  GIGSG V  S QST  SNFGNENS  + +   + F G  + ++     SF SLL
Sbjct:    7 NHHQLQVPSFLNPPQKASMPENNINNHNKQPAEIKDFQIMIENRDHNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGNKSDGETIQWLLQQAEPSIIAATGTGTFPASALAVAGASVSEQGNSVSTGLHTKMEGLGPAVVGSRDRTNWTMMNTNLGRSNVASGVWPSVGGIGSGFVPNSGQST--SNFGNENSTTLPKIGAWTFTGWAWWDVQSS--SFESLL 238
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A0B0MJW9_GOSAR (Transcription factor TCP20-like protein OS=Gossypium arboreum GN=F383_03898 PE=4 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 1.590e-80
Identity = 161/272 (59.19%), Postives = 192/272 (70.59%), Query Frame = 1 
Query:  130 NKPAEIKNLQIMIASKDDNKKQ-LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM---GLGACTGSKDRNNWAMLGGNLGR-SQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVT-DKDNSQGSKQ 927
            NK AEIK+ QI++A K + KKQ LAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALAAA  SV   G S+SAGLH KM   G  +      R +W M+GGNLGR   + +G W   +G G      S    S +NFG+++SN++ Q  GF G + P  NMG +SF+S+L G+N Q+PGLELGLSQD H GV N  A    Y Q+ Q R   +  +Q+Q  T  KD+SQGS Q
Sbjct:   34 NKEAEIKDFQIVVADKGEGKKQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAWGSVSQPGASLSAGLHQKMEDLGGSSIGSGSSRTSWTMVGGNLGRPHHVATGLWPPVSGFGF----QSSSGPSTTNFGSDSSNYL-QKLGFPGFDLPASNMGQISFTSILGGANQQLPGLELGLSQDGHIGVLNPHALDQIYQQMEQARMQPQYQHQRQQQTPAKDDSQGSGQ 300
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A0D2TKZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G084600 PE=4 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.252e-79
Identity = 160/272 (58.82%), Postives = 189/272 (69.49%), Query Frame = 1 
Query:  130 NKPAEIKNLQIMIASKDDNKKQ-LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM---GLGACTGSKDRNNWAMLGGNLGR-SQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR-GGVRPLNQQQIVTDKDNSQGSKQ 927
            NK AEIK+ QI++A K + KKQ LAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALAAAG SV   G S+SAGLH KM   G  +      R +W M+GGNLGR   + +G W   +G G      S    S +N G+++SN++ Q  GF G + P  NMG +SF+S+L G+N Q+PGLELGLSQD H GV N  A +  Y Q+ Q R         QQ    KD+SQGS Q
Sbjct:   34 NKAAEIKDFQIVVADKGEGKKQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAAAGGSVSQPGASLSAGLHQKMEDLGGSSIGSGSSRTSWTMVGGNLGRPHHVATGLWPPVSGFGF----QSSSGPSTTNLGSDSSNYL-QKLGFPGFDLPASNMGQISFTSILGGANQQLPGLELGLSQDGHIGVLNPHALNQIYQQMEQARMQPQHQHQHQQQPPAKDDSQGSGQ 300
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.497e-65
Identity = 133/249 (53.41%), Postives = 166/249 (66.67%), Query Frame = 1 
Query:  124 ENNKPA-EIKNLQIMIASKDD-------NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXX-XQGNSVSAGLHTKMGLGACTGSKDRN-NWAMLGGN-LGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFY 837
            EN KP  EIK+ QI++++ D        N+ QL PKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALA++ A+    QG S++AGL     L   + S  R  NW + GG  + RS +P+G W +  G GSG+      S  A               GF G +FP +  G +SF+S+L G++ Q+PGLELGLSQ+ + GV N Q+F+  Y
Sbjct:   39 ENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLMSEGAG-----------YRIGFPGFDFPGV--GHMSFASILGGNHNQMPGLELGLSQEGNVGVLNPQSFTQIY 274
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.340e-34
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:  154 LQIMIASKDDNK--KQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            L I+  + + N   K+  PKR+S KDRH KV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQ+EP++IAATGTGTIP
Sbjct:   29 LAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIP 113
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.983e-33
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:  205 KRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            KR+S KDRH KVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQ+EPS+IAATGTGTIP
Sbjct:  113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIP 178
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.070e-31
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:  208 RSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            + S KDRH KVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQ+EP+I+AATGTGTIP
Sbjct:   57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP 121
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.049e-31
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:  205 KRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            KR+S KDRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLL+ +EP+IIAATGTGT+P
Sbjct:   71 KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVP 136
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.642e-31
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:  160 IMIASKDDN-----KKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +M+  ++D      K + APKR ++KDRH KV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLL+++EP+II ATGTGT+P
Sbjct:   33 MMLMKQEDGYLQPVKTKPAPKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVP 118
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.749e-31
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:  163 MIASKDDNKKQL-APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +I  +  NK  L A K+  +KDRH KVDGRGRRIRMP +CAAR+FQLTRELGHKSDG+TI+WLL+Q+EPSIIAATGTGT P
Sbjct:   12 IIVEQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTP 92
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.982e-31
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:  208 RSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +   KDRH KVDGRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQ+EP+IIA+TGTGTIP
Sbjct:   60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIP 124
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.019e-30
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:  217 NKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            N+DRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQSEP+IIAATGTGT+P
Sbjct:   75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136
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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.019e-30
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:  217 NKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            N+DRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQSEP+IIAATGTGT+P
Sbjct:   75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9RH46_RICCO2.792e-8863.27Transcription factor, putative OS=Ricinus communis... [more]
M5WYR6_PRUPE1.844e-8664.78Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067L058_JATCU1.257e-8560.52Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A061EKM4_THECC1.223e-8463.05Teosinte branched 1 OS=Theobroma cacao GN=TCM_0172... [more]
M5XSE7_PRUPE2.655e-8462.07Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9GF50_POPTR2.813e-8360.14TCP family transcription factor family protein OS=... [more]
V7CWP0_PHAVU2.854e-8260.07Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
B9GMN9_POPTR2.663e-8167.80Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0B0MJW9_GOSAR1.590e-8059.19Transcription factor TCP20-like protein OS=Gossypi... [more]
A0A0D2TKZ1_GOSRA1.252e-7958.82Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP20_ARATH3.497e-6553.41Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP15_ARATH5.340e-3471.76Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP14_ARATH5.983e-3389.39Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
TCP8_ARATH1.070e-3186.15Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP9_ARATH2.049e-3183.33Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]
TCP19_ARATH3.642e-3166.28Transcription factor TCP19 OS=Arabidopsis thaliana... [more]
TCP21_ARATH7.749e-3171.60Transcription factor TCP21 OS=Arabidopsis thaliana... [more]
TCP22_ARATH8.982e-3183.08Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
PCF2_ORYSJ2.019e-3088.71Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI2.019e-3088.71Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005333Transcription factor, TCPPFAMPF03634TCPcoord: 61..177
e-value: 7.6E-31
score: 107.6
NoneNo IPR availablePANTHERPTHR31072:SF4TRANSCRIPTION FACTOR TCP20-RELATEDcoord: 28..149
NoneNo IPR availablePANTHERPTHR31072FAMILY NOT NAMEDcoord: 28..149
IPR017887Transcription factor TCP subgroupPROSITEPS51369TCPcoord: 62..116
score: 27.613

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003394 ID=g.arboreum_cottongen_reftransV1_0003394; Name=g.arboreum_cottongen_reftransV1_0003394; organism=Gossypium arboreum; type=contig; length=1293bp
CGCCAATCAAGGAGGCCCCATAATTGAGTTTACATGGAGCCTAAGGGCAA
GAGCAAGGGCAAGGGCAAGGGCTCAAATCATCATCCACAAGAGGTGCCCA
CCTGCTTGACTCCTCAGAAAGCAGAGAACAATAAACCTGCAGAAATAAAA
AACTTGCAAATCATGATTGCGAGCAAAGATGATAACAAGAAGCAACTAGC
TCCCAAAAGAAGCTCAAACAAAGACAGGCACAAGAAAGTAGATGGCAGAG
GTAGAAGAATAAGGATGCCTGCTCTGTGCGCCGCCAGGATTTTCCAATTG
ACCCGAGAATTGGGTCACAAATCCGATGGCGAGACCATTCAGTGGTTGTT
GCAGCAATCGGAACCATCTATCATTGCTGCAACTGGAACTGGGACGATTC
CCGCTTCAGCTCTGGCGGCTGCTGGAGCCTCTGTTTGTGCGCAGGGGAAC
TCTGTCTCTGCTGGTTTGCATACCAAAATGGGACTGGGGGCATGTACTGG
GTCCAAAGATAGGAATAATTGGGCAATGTTGGGTGGTAATTTAGGAAGAT
CCCAAATCCCAAGTGGGGCATGGTCTTCTAGTAATGGAATTGGATCAGGG
CTTGTTCAAGCTTCAGAGCAATCCACATCAGCTTCAAATTTTGGGAATGA
AAACTCAAATCATATCCACCAAAACTATGGGTTCCAGGGGCTTGAATTTC
CAAATATTAATATGGGTTTTGTGAGTTTTTCGTCGCTGCTCAACGGTAGT
AACCCCCAGGTTCCAGGTTTGGAGCTTGGGCTTTCACAGGATCCGCATTT
TGGTGTGTCTAATTCCCAAGCTTTTAGCCACTTTTACCCGCAGATTGGGC
AGCAGCGAGGTGGTGTACGTCCCTTGAATCAGCAGCAGATTGTTACTGAT
AAGGATAATTCCCAGGGATCCAAGCAGTAGCTAGTCTTTCTAAACAACAA
CAAGATGATGACGACGACTGGTCAACCCGATTATATATTGCGTTCCTTGA
CCAGAAACTAAAGGTAAAATGATTTCTGAACAGTTCAATTTGCTGGGATG
AGTTGTGAAGAGAATAACAATGGCCAGGAAATTGGATTTACTTCTGCTGC
TTGTTAAACATTGATGGATTTAGTTTGGTGTTTGTTAAACTGAACTTTGA
GGTGTGTTTATTATTGTTTAGTACAATTTTGTCGGGCAAATATCACTTGT
TTGCTCTATATTTCATGTCTAAGCGAAGTAGATTGGTATCTTAAAGCAAT
AGAGATGAGGGGGATTTCCATTGTTTTCAACTTTAAAGTAGCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005333Transcription_factor_TCP
IPR017887TF_TCP_subgr