g.arboreum_cottongen_reftransV1_0006205, g.arboreum_cottongen_reftransV1_0006205 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: C6TL30_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 1.062e-84 Identity = 157/223 (70.40%), Postives = 198/223 (88.79%), Query Frame = -2 Query: 151 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDD 819 LAFNAVFSY +NSQK TALI+NS V+L+LSAAL+AVNED+D PSG SKGKY++GF+CTLGASA+YSLLLSLMQL+F+KVL+KET++VVLEMQIYTS VA+ S GLF SGEW+ L EM+GF+ G V+YV+TLVW +++WQVC+VGVVGLIF VSSL+SNVIST+SLA+TP+AA++VFHD+MNGVK+I+MLLAL GF SYIYQNYLDD+K R +++ + + + Sbjct: 136 LAFNAVFSYFINSQKFTALIINSTVVLTLSAALLAVNEDTDEPSGFSKGKYIIGFLCTLGASAVYSLLLSLMQLTFEKVLKKETFSVVLEMQIYTSFVASGASVIGLFASGEWRTLHGEMEGFQKGYVAYVMTLVWTSIAWQVCSVGVVGLIFLVSSLYSNVISTVSLAVTPIAAVIVFHDKMNGVKIISMLLALWGFASYIYQNYLDDSKTRHAQAATKSQN 358
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: A0A059C4W4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01707 PE=4 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 1.292e-84 Identity = 171/227 (75.33%), Postives = 201/227 (88.55%), Query Frame = -2 Query: 148 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSE---SQSHTDDV 819 LAFNAVFS+ LNSQ+ TALILNSVV+LSLSAALIAVN+DSDG SGVSKGKY++GF+CTLGASA+YSLLLSLMQLSFQKVL+KET++VVLEMQIYT+LVATCVS GLF SGEWK L +EM+ F GR SYVLT+V+ AV WQ+C+VGVVGLIF VSSLFSNVIST+ LA+TP+A+++VFHD+MNGVKVIAMLLAL GF SYIYQNYLDD+KAR+ + ++ D V Sbjct: 162 LAFNAVFSFYLNSQRFTALILNSVVVLSLSAALIAVNDDSDGLSGVSKGKYILGFVCTLGASAIYSLLLSLMQLSFQKVLKKETFSVVLEMQIYTALVATCVSVLGLFASGEWKTLHEEMQSFGQGRASYVLTVVFTAVCWQICSVGVVGLIFIVSSLFSNVISTVGLAVTPIASVIVFHDKMNGVKVIAMLLALWGFASYIYQNYLDDSKARRMQGAGDETRNDSV 388
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: A0A022RKP6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008679mg PE=4 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 2.497e-84 Identity = 161/222 (72.52%), Postives = 193/222 (86.94%), Query Frame = -2 Query: 154 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTD 819 LAFNA+FSY LNSQK TALI NSVVILSLSAAL+A+N+DSD P GVSK KY++G + L ASALYSLLLSLMQL+F+KVL+KET+++VLEMQIYT++VATCV+ GLF SGEW+ LQ EM F SGRVSYV+TLVW AV+WQVC+VGVVGLIF VSSLFSNVISTLSLA+TPLA++++FHD MNGVK+IAML+A+ GF SYIYQNYLDD K+R + + + D Sbjct: 137 LAFNAIFSYFLNSQKFTALIFNSVVILSLSAALLAINDDSDKPLGVSKRKYIIGIVTALAASALYSLLLSLMQLTFEKVLKKETFSIVLEMQIYTAIVATCVAIVGLFASGEWRSLQGEMGNFTSGRVSYVMTLVWTAVAWQVCSVGVVGLIFVVSSLFSNVISTLSLAVTPLASVVIFHDSMNGVKIIAMLMAIWGFASYIYQNYLDDLKSRNDKIRGNND 358
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: V7B5H2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G051100g PE=4 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 2.682e-83 Identity = 159/223 (71.30%), Postives = 199/223 (89.24%), Query Frame = -2 Query: 151 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDD 819 LAFNAVFSY +N+QK T LI+NS VIL+LSA+L+AVNEDS+ PSG++KGKY++GF+CTLGASALYSLLLSLMQL+F+KVL+KET++VVLEMQIYTSLVAT VS GLF SGE L EM+GF G+V+YV+TLVW AV+WQVC+VGVVGLIF VSSL+SNVIST+SLA+TP+AA++VFHD+MNGVK+I+MLLA+ GF SYIYQNYLDD+KAR +++ + + + Sbjct: 170 LAFNAVFSYFINAQKFTVLIINSTVILTLSASLLAVNEDSEEPSGLAKGKYIIGFLCTLGASALYSLLLSLMQLTFEKVLKKETFSVVLEMQIYTSLVATSVSVIGLFASGESHTLHGEMEGFGKGQVAYVMTLVWTAVAWQVCSVGVVGLIFLVSSLYSNVISTVSLAVTPIAAVIVFHDKMNGVKIISMLLAIWGFVSYIYQNYLDDSKARHAQAVARSQN 392
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: A0A078HEY2_BRANA (BnaC08g05090D protein OS=Brassica napus GN=BnaC08g05090D PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 8.765e-83 Identity = 159/224 (70.98%), Postives = 191/224 (85.27%), Query Frame = -2 Query: 148 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDV 819 LAF+AVFSY +N+QK T+LILNSVV+LS SA LIA+N+++D PSGVS+ KY+VGF+CTL ASALYSLLLSLMQ SF+KVL+KET++VVLEMQIYTSLVATCVS GLF SGEW+ L EM G+ G+ SYVLTLV AV+WQVC+VGVVGLIF VSSLFSNVISTLSLA+TPLAAL VF D+M+G+KV+AML+AL GF SY+ QN+LDD K R++ Q+H V Sbjct: 72 LAFSAVFSYFINAQKFTSLILNSVVLLSFSATLIALNDNADAPSGVSRSKYIVGFVCTLAASALYSLLLSLMQFSFEKVLQKETFSVVLEMQIYTSLVATCVSVIGLFASGEWRTLHGEMDGYHKGQASYVLTLVGTAVTWQVCSVGVVGLIFLVSSLFSNVISTLSLAVTPLAALAVFRDKMSGIKVLAMLIALWGFASYVQQNHLDDLKLRRARKQAHASRV 295
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP16_ARATH (Probable purine permease 16 OS=Arabidopsis thaliana GN=PUP16 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.787e-13 Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = -2 Query: 286 FQKVL-------RKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLV 594 F KVL K+ + +VLEMQI S +AT + T GLF SGE+K L+ + + FK G+ Y+L+LV A+SWQV AVG++GL+ VS LF++V+ + +P+ ALLV Sbjct: 223 FDKVLVKTKRYGNKKVFRMVLEMQICVSFIATLICTVGLFASGEFKELKGDSERFKKGKTYYILSLVGLALSWQVWAVGLLGLVLLVSGLFADVV---HMGASPVVALLV 329
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP4_ARATH (Probable purine permease 4 OS=Arabidopsis thaliana GN=PUP4 PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.405e-10 Identity = 62/205 (30.24%), Postives = 111/205 (54.15%), Query Frame = -2 Query: 211 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKG-FKSGRVSY-VLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIY 819 L F + S ++ QK+T LN VV+L+LS+ L+A++ D PSG++K KY +G++ T+GA L++L L + + ++ V Y +V+E+Q+ AT +T G+ G +K + E F G Y ++ V+WQ+ G+++ S + + T LA+ + ++ + D GVK+++ +L + GF SY Y Sbjct: 135 LVFTLILSRIIVKQKITFSNLNCVVLLTLSSVLLALDSSKDKPSGLTKTKYFIGYVSTIGAGLLFALYLPVTEKLYRTVY---CYAMVMEVQLVMEFAATVFATIGMACEGGFKEMVKEANHVFTKGPTFYWTFAILANVVTWQLSFAATSGMVYLTSGITGGICMTALLAMNVIGGVVAYGDVFGGVKIVSTVLCIWGFSSYTY 336 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 22
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006205 ID=g.arboreum_cottongen_reftransV1_0006205; Name=g.arboreum_cottongen_reftransV1_0006205; organism=Gossypium arboreum; type=contig; length=820bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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