g.arboreum_cottongen_reftransV1_0006205, g.arboreum_cottongen_reftransV1_0006205 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0006205
Unique Name	g.arboreum_cottongen_reftransV1_0006205
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	820

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0006205:1..820 . Chr12:115128122..115128941 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: A0A0D2SGF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G084100 PE=4 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.071e-128
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = -2

Query:  127 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDVIQESHHV 819
            LAFNAVFSYLLNSQKLTALILNSVVILSLSAALIAVNEDSDGPSGVSKGKYLVGFICTLGASALYSLLLSLMQLSFQKVLRKETYNVVLEMQIYTSLVATCVSTAG+FGSGEWKGLQDEMKGFKSGRVSYVLTLVW AVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDVIQESHHV
Sbjct:  141 LAFNAVFSYLLNSQKLTALILNSVVILSLSAALIAVNEDSDGPSGVSKGKYLVGFICTLGASALYSLLLSLMQLSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGMFGSGEWKGLQDEMKGFKSGRVSYVLTLVWTAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDVIQESHHV 371

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: A0A061DV33_THECC (Purine permease 11 isoform 2 OS=Theobroma cacao GN=TCM_005801 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 5.340e-98
Identity = 188/229 (82.10%), Postives = 209/229 (91.27%), Query Frame = -2

Query:  133 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDVIQESH 819
            LAFNAVFS+ LNSQK TALILNSVVILSLSAALIAVN+DS+GPSGVSKGK+L+GF+CT+GASALYSLLLSLMQLSFQKVL+KET++VVLEMQIYTSLVA+CVST GLF SGEWK L  EM+ F SGRVSYVLTLVW AV+WQVCAVGVVGLIF VSSLFSNVISTLSLA+TPLAAL+VFHD+MNGVKVIAMLLALCGF SYIYQNYLDD KAR+S++       +QE+H
Sbjct:  124 LAFNAVFSFFLNSQKFTALILNSVVILSLSAALIAVNDDSEGPSGVSKGKFLLGFLCTVGASALYSLLLSLMQLSFQKVLKKETFSVVLEMQIYTSLVASCVSTVGLFASGEWKTLHHEMEDFNSGRVSYVLTLVWTAVTWQVCAVGVVGLIFVVSSLFSNVISTLSLAVTPLAALVVFHDKMNGVKVIAMLLALCGFASYIYQNYLDDKKARRSQTD------VQENH 346

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: A0A061DUU7_THECC (Purine permease 11 isoform 1 OS=Theobroma cacao GN=TCM_005801 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.001e-97
Identity = 188/229 (82.10%), Postives = 209/229 (91.27%), Query Frame = -2

Query:  133 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDVIQESH 819
            LAFNAVFS+ LNSQK TALILNSVVILSLSAALIAVN+DS+GPSGVSKGK+L+GF+CT+GASALYSLLLSLMQLSFQKVL+KET++VVLEMQIYTSLVA+CVST GLF SGEWK L  EM+ F SGRVSYVLTLVW AV+WQVCAVGVVGLIF VSSLFSNVISTLSLA+TPLAAL+VFHD+MNGVKVIAMLLALCGF SYIYQNYLDD KAR+S++       +QE+H
Sbjct:  139 LAFNAVFSFFLNSQKFTALILNSVVILSLSAALIAVNDDSEGPSGVSKGKFLLGFLCTVGASALYSLLLSLMQLSFQKVLKKETFSVVLEMQIYTSLVASCVSTVGLFASGEWKTLHHEMEDFNSGRVSYVLTLVWTAVTWQVCAVGVVGLIFVVSSLFSNVISTLSLAVTPLAALVVFHDKMNGVKVIAMLLALCGFASYIYQNYLDDKKARRSQTD------VQENH 361

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: A0A0D2PSU4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G111600 PE=4 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 1.241e-95
Identity = 183/224 (81.70%), Postives = 204/224 (91.07%), Query Frame = -2

Query:  148 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDV 819
            LAFNAVFSY LNSQK TALILNSVVILSLSAALIAVN+DSDGPSGV KGK+L+GF+CTLGASALYSLLLS MQLSFQKVL+KET++VVLEMQIYTS+VA+C+ST GLF SGEWK LQ EM+ F +GRVSYVLTLVW A++WQVCAVGVVGLIF VSSLFSNVISTLSLA+TPLAAL+VFHD+MNGVKVIAMLLALCGF SYIYQNY+DD KAR    Q+H  ++
Sbjct:  139 LAFNAVFSYFLNSQKFTALILNSVVILSLSAALIAVNDDSDGPSGVPKGKFLIGFLCTLGASALYSLLLSFMQLSFQKVLKKETFSVVLEMQIYTSVVASCLSTIGLFASGEWKSLQHEMEVFGTGRVSYVLTLVWTAITWQVCAVGVVGLIFVVSSLFSNVISTLSLAVTPLAALVVFHDKMNGVKVIAMLLALCGFASYIYQNYIDDKKART--LQTHVREI 360

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: A0A0B2S886_GLYSO (Putative purine permease 11 OS=Glycine soja GN=glysoja_001002 PE=4 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.479e-91
Identity = 165/225 (73.33%), Postives = 201/225 (89.33%), Query Frame = -2

Query:  151 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSE--SQSHTDD 819
            LAFNAVFSY +NSQK TALI+NS V+L+LSAAL+AVNEDSD PSG+S GKY++GF+CTLGASA+YSLLLSLMQL+F+KVL+KET++VVL+MQIYTSLVATC S  GLF SGEW  L  EMKGF+ G V+YV+TLVW A++WQVC+VGVVGLIF VSSL+SNVIST+SLA+TP+AA++VFHD+MNGVK+I+MLLAL GF SYIYQNYLDD+KAR ++  ++SH D 
Sbjct:   75 LAFNAVFSYFINSQKFTALIINSTVVLTLSAALLAVNEDSDEPSGLSMGKYIIGFLCTLGASAVYSLLLSLMQLTFEKVLKKETFSVVLQMQIYTSLVATCASVIGLFASGEWHTLHGEMKGFQKGHVAYVMTLVWTAIAWQVCSVGVVGLIFLVSSLYSNVISTVSLAVTPIAAVIVFHDKMNGVKIISMLLALWGFASYIYQNYLDDSKARHAQAVAKSHNDS 299

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: W9RFX8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023902 PE=4 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.470e-90
Identity = 169/227 (74.45%), Postives = 201/227 (88.55%), Query Frame = -2

Query:  148 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKS---ESQSHTDDV 819
            LAFNAVFSY +NSQK TAL+LNSVV+LSLSAALIAVN+DSDGP+GVSK KY++GFICTL ASA+YSLLLSLMQLSFQKVL++ET+ VVLEMQIYTSLVAT VS  GLF SGEW+ L  EM+GF  G  +YV+TLVW AV+WQVC+VGVVGLIF VSSLFSNVISTLSLA+TP+A+++VFHD+MNGVK++AML+A+ GF SYIYQNYLDD+KAR++   E++S  D V
Sbjct:   76 LAFNAVFSYFINSQKFTALVLNSVVVLSLSAALIAVNDDSDGPTGVSKAKYIIGFICTLAASAIYSLLLSLMQLSFQKVLKRETFTVVLEMQIYTSLVATSVSLIGLFASGEWRILHGEMQGFGKGGFAYVMTLVWTAVAWQVCSVGVVGLIFVVSSLFSNVISTLSLAVTPIASVIVFHDKMNGVKIVAMLMAIWGFASYIYQNYLDDSKARRTQTRETESQNDSV 302

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: I1N423_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.112e-89
Identity = 165/225 (73.33%), Postives = 201/225 (89.33%), Query Frame = -2

Query:  151 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSE--SQSHTDD 819
            LAFNAVFSY +NSQK TALI+NS V+L+LSAAL+AVNEDSD PSG+S GKY++GF+CTLGASA+YSLLLSLMQL+F+KVL+KET++VVL+MQIYTSLVATC S  GLF SGEW  L  EMKGF+ G V+YV+TLVW A++WQVC+VGVVGLIF VSSL+SNVIST+SLA+TP+AA++VFHD+MNGVK+I+MLLAL GF SYIYQNYLDD+KAR ++  ++SH D 
Sbjct:  136 LAFNAVFSYFINSQKFTALIINSTVVLTLSAALLAVNEDSDEPSGLSMGKYIIGFLCTLGASAVYSLLLSLMQLTFEKVLKKETFSVVLQMQIYTSLVATCASVIGLFASGEWHTLHGEMKGFQKGHVAYVMTLVWTAIAWQVCSVGVVGLIFLVSSLYSNVISTVSLAVTPIAAVIVFHDKMNGVKIISMLLALWGFASYIYQNYLDDSKARHAQAVAKSHNDS 360

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: K7MUJ0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.720e-89
Identity = 165/225 (73.33%), Postives = 201/225 (89.33%), Query Frame = -2

Query:  151 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSE--SQSHTDD 819
            LAFNAVFSY +NSQK TALI+NS V+L+LSAAL+AVNEDSD PSG+S GKY++GF+CTLGASA+YSLLLSLMQL+F+KVL+KET++VVL+MQIYTSLVATC S  GLF SGEW  L  EMKGF+ G V+YV+TLVW A++WQVC+VGVVGLIF VSSL+SNVIST+SLA+TP+AA++VFHD+MNGVK+I+MLLAL GF SYIYQNYLDD+KAR ++  ++SH D 
Sbjct:  139 LAFNAVFSYFINSQKFTALIINSTVVLTLSAALLAVNEDSDEPSGLSMGKYIIGFLCTLGASAVYSLLLSLMQLTFEKVLKKETFSVVLQMQIYTSLVATCASVIGLFASGEWHTLHGEMKGFQKGHVAYVMTLVWTAIAWQVCSVGVVGLIFLVSSLYSNVISTVSLAVTPIAAVIVFHDKMNGVKIISMLLALWGFASYIYQNYLDDSKARHAQAVAKSHNDS 363

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: W9QQS4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021136 PE=4 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 3.312e-88
Identity = 169/227 (74.45%), Postives = 201/227 (88.55%), Query Frame = -2

Query:  148 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKS---ESQSHTDDV 819
            LAFNAVFSY +NSQK TAL+LNSVV+LSLSAALIAVN+DSDGP+GVSK KY++GFICTL ASA+YSLLLSLMQLSFQKVL++ET+ VVLEMQIYTSLVAT VS  GLF SGEW+ L  EM+GF  G  +YV+TLVW AV+WQVC+VGVVGLIF VSSLFSNVISTLSLA+TP+A+++VFHD+MNGVK++AML+A+ GF SYIYQNYLDD+KAR++   E++S  D V
Sbjct:  163 LAFNAVFSYFINSQKFTALVLNSVVVLSLSAALIAVNDDSDGPTGVSKAKYIIGFICTLAASAIYSLLLSLMQLSFQKVLKRETFTVVLEMQIYTSLVATSVSLIGLFASGEWRILHGEMQGFGKGGFAYVMTLVWTAVAWQVCSVGVVGLIFVVSSLFSNVISTLSLAVTPIASVIVFHDKMNGVKIVAMLMAIWGFASYIYQNYLDDSKARRTQTRETESQNDSV 389

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Match: M5WZV3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007245mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.411e-88
Identity = 164/225 (72.89%), Postives = 201/225 (89.33%), Query Frame = -2

Query:  154 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSE---SQSHTD 819
            LAFNAVFSY +NSQK TALILNSV+I+S SAALIAV++DS GP+GVSK K+++GFICTLGASA+YSLLLSLMQL+FQKVL+KET++VVLEMQIYT+LVA+C +T GLF SGEW+ L  EM+ F  GRVSYV+TLVW AV+WQVC+VGVVGLIF VSSLFSNVISTLSLA+TP+AA+++FHD+M+GVK+IAMLLA+ GF +YIYQNYLDD+K R+ +   ++SH D
Sbjct:  141 LAFNAVFSYFINSQKFTALILNSVIIVSFSAALIAVSDDSSGPAGVSKWKHILGFICTLGASAIYSLLLSLMQLTFQKVLKKETFSVVLEMQIYTALVASCAATVGLFASGEWRTLHGEMENFGEGRVSYVMTLVWTAVAWQVCSVGVVGLIFVVSSLFSNVISTLSLAVTPIAAVIIFHDKMDGVKIIAMLLAIWGFATYIYQNYLDDSKVRRRQTGVTESHND 365

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP1_ARATH (Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.461e-25
Identity = 79/233 (33.91%), Postives = 139/233 (59.66%), Query Frame = -2

Query:  127 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFK-SGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTD-DVIQESHHV 819
            LAFNA+F++LL  QK T   +N+VV+L++   ++A++ D D P+  SK +Y+VGF+ T+ A+ LY+ +L L++L+++K  ++ T+ +VLE+Q+   L AT     G+F  G++K +  E + FK  G V Y   +V   + WQ   +G +G++F  SSL S V+ ++ L +T + A++ F ++    K +++LL+L GF SY Y  +    K         T+  ++  S +V
Sbjct:  123 LAFNALFAFLLVKQKFTPFSINAVVLLTVGIGILALHSDGDKPAKESKKEYVVGFLMTVVAALLYAFILPLVELTYKKARQEITFPLVLEIQMVMCLAATFFCVIGMFIVGDFKVIAREAREFKIGGSVFYYALIVITGIIWQGFFLGAIGIVFCASSLASGVLISVLLPVTEVFAVVCFREKFQAEKGVSLLLSLWGFVSYFYGEFKSGKKVVDKPQPPETELPILPVSDYV 355

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP14_ARATH (Probable purine permease 14 OS=Arabidopsis thaliana GN=PUP14 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.233e-22
Identity = 53/135 (39.26%), Postives = 86/135 (63.70%), Query Frame = -2

Query:  184 RKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFH---DEMNGVKVIAMLLALCGFCSYIYQNYLDDTKA 579
            +K ++  V E+ I++SLVAT +S  GL  +GE   L+ EM GF  G+ SYV+ +V  AVSWQV  VG+VGL+++VSS+ SNVIS ++  I  +  ++ F+   DE +  K +A++ A+    +Y ++ + D+  A
Sbjct:  258 QKPSFASVFEVIIFSSLVATIISVVGLLIAGEQHDLKREMNGFSKGKGSYVMAMVGQAVSWQVYWVGIVGLVYSVSSVLSNVISVITWPIVSVLVVIFFNFMDDEFDAFKGVALVTAVLSAAAYFFRLHKDNRMA 392

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP2_ARATH (Purine permease 2 OS=Arabidopsis thaliana GN=PUP2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.995e-21
Identity = 77/229 (33.62%), Postives = 130/229 (56.77%), Query Frame = -2

Query:  166 LAFNAVFSYLLNSQKLTXXXXXXXXXXXXXXXXXXXNEDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKG-----------LQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQ 819
            L F A+F++ +  QK T   +N++V+L+  A ++A+N DSD  +  +  +Y+VGFI TLGA+ LY  +L L++LS++K  ++ TY + LE Q+     ATCV   G+  +G++K            +  E + FK G   Y + +V+ A+ WQ   VG +GLIF  SSL S ++ +  L +T + A++ F ++    K +A+ L+L G  SY Y     + K +  ++Q
Sbjct:  119 LGFTALFAFFMVKQKFTPFTINAIVLLTGGAVVLALNSDSDKLANETHKEYVVGFIMTLGAALLYGFILPLVELSYKKSGQRITYTLALEFQMVLCFAATCVCLVGMLAAGDFKVKHALFIFKNRVIAGEARDFKLGESLYYVVIVFTAIIWQAFFVGAIGLIFCASSLVSGIMVSALLPVTVILAVICFQEKFQAGKGVALALSLWGSVSYFYGQVKSEEKTKAQDTQ 347

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP5_ARATH (Probable purine permease 5 OS=Arabidopsis thaliana GN=PUP5 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.551e-21
Identity = 55/161 (34.16%), Postives = 98/161 (60.87%), Query Frame = -2

Query:  226 EDSDGPSGVSKGKYLVGFICTXXXXXXXXXXXXXXXXSFQKVLRKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVIAMLLALCGF 708
              SD  S +S  +Y  GF   +  SAL+ L+ +L +L F K+L + +++V LE Q+  SL A   +T G+  S +++G+  E K FK G   Y   LVW+AV++Q+  +G   ++F  S++ + V++ + + IT +AA+++ HD M+G K+++++L   GF
Sbjct:  180 SSSDRYSYISNSQYFAGFFWDIMGSALHGLIFALSELLFVKLLGRRSFHVALEQQVMVSLTAFAFTTIGMVVSNDFQGMSHEAKSFKGGESLYTQVLVWSAVTFQLGVLGATAVLFLASTVMAGVLNAVRVPITSVAAVILMHDPMSGFKILSLVLTFWGF 340

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP20_ARATH (Putative purine permease 20 OS=Arabidopsis thaliana GN=PUP20 PE=5 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.693e-20
Identity = 60/157 (38.22%), Postives = 93/157 (59.24%), Query Frame = -2

Query:  148 FQKVLRKETYNV--VLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLV------FHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDV 594
            FQKV+ K    V  V+ MQ   S++AT +   GLF SGE+K ++++ + FK+G+  YVL+L+  +++WQV ++G+VGL+   SSLFSNV+   S + TP+A + V        D++   K  A+L  + GF SY+Y  Y      +K E  S T+ V
Sbjct:  237 FQKVIPKTESRVSAVMLMQTNASMIATLICLVGLFVSGEFKDIKEDFETFKTGKPLYVLSLIGLSLAWQVMSLGLVGLVCLASSLFSNVV---SFSATPVANIFVVLAFRFMDDDIGWFKGGALLAGILGFASYVYSLY---KAIKKQEIASQTELV 387

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP19_ARATH (Putative purine permease 19 OS=Arabidopsis thaliana GN=PUP19 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-20
Identity = 59/154 (38.31%), Postives = 90/154 (58.44%), Query Frame = -2

Query:  148 FQKVLRKETYNV--VLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGVKVI---AMLLALCGFCSYIYQNYLDDTKARKSESQSHTDDV 594
            FQKV+      V  V+ MQ   S++AT +   GLF SGE+K ++++ + FK G+  YVL+L+  +++WQV ++G+VGL+   SSLFSNV+S  S  +  +  +L F      VK     A++  + GF SY+Y  Y   TK ++  SQS T  V
Sbjct:  240 FQKVIPTTQSRVSAVILMQTNASMIATLICLVGLFVSGEFKDIKEDFETFKKGKPLYVLSLIGLSLAWQVMSLGLVGLVCLASSLFSNVVSFCSTPLVNILLVLAFRFTDADVKFFKEGALVAGILGFASYVYSLY-KSTKKKEIASQSQTTRV 392

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP22_ARATH (Probable purine permease 22 OS=Arabidopsis thaliana GN=PUP22 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.026e-20
Identity = 55/147 (37.41%), Postives = 86/147 (58.50%), Query Frame = -2

Query:  154 KETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLV------FHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTD 576
            K+ + +VLEMQI  S VA+ V   GLF SGE+K L+ + + FK G   YVL+LV  A+SWQV AVG++GL+  VSS+FSN++    +  +PL A +V        D+ +  ++ A++ ++    SY Y  +  + K     +QS  +
Sbjct:  248 KKVFRMVLEMQICVSSVASVVCLVGLFASGEYKELKGDSERFKKGETYYVLSLVGLALSWQVWAVGLIGLVLYVSSVFSNIV---HMCASPLMAFIVVLAFDFIDDDFSWPRIGALIGSVLALGSYFYTLHKRNKKKMVEFNQSENN 391

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP15_ARATH (Putative purine permease 15 OS=Arabidopsis thaliana GN=PUP15 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.133e-19
Identity = 51/125 (40.80%), Postives = 76/125 (60.80%), Query Frame = -2

Query:  211 RKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVF--HDEMNGVKVIAMLLALCGFCSYIY 579
            ++ ++ VVLEM I+ SLV T +  A +  SGE   ++ EM+ F  G ++YV T+V  AV+WQ+  VG+VGL+FAVS++FSNVIS  +  I  L    ++  HD  +  + IA+  A      YIY
Sbjct:  248 KQPSFVVVLEMIIFLSLVVTIILVAAVLISGEHHDMKKEMETFTKGDIAYVRTMVGQAVAWQIYWVGIVGLVFAVSAVFSNVISVCTWPIVSLLVAFLYNTHDHFDVFRGIALGAAALSVSCYIY 372

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP18_ARATH (Probable purine permease 18 OS=Arabidopsis thaliana GN=PUP18 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.181e-18
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = -2

Query:  154 FQKVL-------RKETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLV------FHDEMNGVKVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTD 594
            F+KVL        K+ + +V+EMQI  S VAT V   GLF SGE K LQ +   FK G   YVL+L+  A+SWQV AVG++GL+  VS +F +V+    +  +PL AL V        DE +  ++  ++  +    SY Y  +  + K      Q+  +
Sbjct:  231 FEKVLVKTKRYGNKKVFRMVIEMQICVSFVATVVCLVGLFASGENKELQGDSHRFKKGETYYVLSLIGLALSWQVWAVGLMGLVLYVSGVFGDVV---HMCTSPLVALFVVLAFDFMDDEFSWPRIGTLIATVVALGSYFYTLHKRNKKKMVELYQTENN 387

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Match: PUP17_ARATH (Probable purine permease 17 OS=Arabidopsis thaliana GN=PUP17 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.109e-17
Identity = 53/145 (36.55%), Postives = 81/145 (55.86%), Query Frame = -2

Query:  154 KETYNVVLEMQIYTSLVATCVSTAGLFGSGEWKGLQDEMKGFKSGRVSYVLTLVWAAVSWQVCAVGVVGLIFAVSSLFSNVISTLSLAITPLAALLVFHDEMNGV----KVIAMLLALCGFCSYIYQNYLDDTKARKSESQSHTD 576
            ++ + +VLEMQI  + VA+ V   GLF S E+K L+ + K FK G   YVL+LV  A+SWQV AVG++GL+  VS LF +V+   +     L  +L F D M+ V    ++ A++  +    SY Y  +  + K     +QS  +
Sbjct:  252 EKVFRMVLEMQICVAFVASVVCLVGLFASDEYKELKGDSKRFKKGETYYVLSLVGLALSWQVWAVGMIGLVHYVSGLFGDVVHMCASPFVALFVVLAF-DFMDDVFSWPRIGALIGTVLALGSYFYTLHKRNKKKMAELNQSENN 395

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2SGF0_GOSRA	1.071e-128	99.13	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DV33_THECC	5.340e-98	82.10	Purine permease 11 isoform 2 OS=Theobroma cacao GN...	[more]
A0A061DUU7_THECC	1.001e-97	82.10	Purine permease 11 isoform 1 OS=Theobroma cacao GN...	[more]
A0A0D2PSU4_GOSRA	1.241e-95	81.70	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B2S886_GLYSO	2.479e-91	73.33	Putative purine permease 11 OS=Glycine soja GN=gly...	[more]
W9RFX8_9ROSA	4.470e-90	74.45	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
I1N423_SOYBN	1.112e-89	73.33	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
K7MUJ0_SOYBN	1.720e-89	73.33	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
W9QQS4_9ROSA	3.312e-88	74.45	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
M5WZV3_PRUPE	5.411e-88	72.89	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0006205 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 22


Match Name	E-value	Identity	Description
PUP1_ARATH	4.461e-25	33.91	Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 ...	[more]
PUP14_ARATH	2.233e-22	39.26	Probable purine permease 14 OS=Arabidopsis thalian...	[more]
PUP2_ARATH	1.995e-21	33.62	Purine permease 2 OS=Arabidopsis thaliana GN=PUP2 ...	[more]
PUP5_ARATH	4.551e-21	34.16	Probable purine permease 5 OS=Arabidopsis thaliana...	[more]
PUP20_ARATH	1.693e-20	38.22	Putative purine permease 20 OS=Arabidopsis thalian...	[more]
PUP19_ARATH	1.694e-20	38.31	Putative purine permease 19 OS=Arabidopsis thalian...	[more]
PUP22_ARATH	6.026e-20	37.41	Probable purine permease 22 OS=Arabidopsis thalian...	[more]
PUP15_ARATH	2.133e-19	40.80	Putative purine permease 15 OS=Arabidopsis thalian...	[more]
PUP18_ARATH	3.181e-18	35.63	Probable purine permease 18 OS=Arabidopsis thalian...	[more]
PUP17_ARATH	2.109e-17	36.55	Probable purine permease 17 OS=Arabidopsis thalian...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF16913	PUNUT	coord: 2..202 e-value: 9.2E-83 score: 278.0
None	No IPR available	PANTHER	PTHR31376:SF2	PURINE PERMEASE 11-RELATED	coord: 1..210
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 171..175
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..27
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 195..222
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 147..152
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 102..120
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 64..83
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 153..170
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 84..101
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 121..146
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 176..194
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..41
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 42..63
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..25 score: 0.484
None	No IPR available	SIGNALP_EUK	SignalP-TM	SignalP-TM	coord: 1..23 score: 0.519
None	No IPR available	TMHMM	TMhelix		coord: 7..27
None	No IPR available	TMHMM	TMhelix		coord: 42..64
None	No IPR available	TMHMM	TMhelix		coord: 77..99
None	No IPR available	TMHMM	TMhelix		coord: 148..170
None	No IPR available	TMHMM	TMhelix		coord: 180..198
None	No IPR available	TMHMM	TMhelix		coord: 119..141
IPR030182	Purine permease, plant	PANTHER	PTHR31376	FAMILY NOT NAMED	coord: 1..210

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0006205 ID=g.arboreum_cottongen_reftransV1_0006205; Name=g.arboreum_cottongen_reftransV1_0006205; organism=Gossypium arboreum; type=contig; length=820bp
GTTTTTTATTTCCTATTCCAAGAAAAAAAAAGAAAAAGAAAAAAGGATAA
AAGACTATCCAATCCATTTTCTATGAGAGTAAATTGAATGCATTGGCACC
AAGTAAGTTAGCAAGAGGAAGAACTATACATGATGGCTCTCCTGAATAAC
ATCATCAGTATGTGATTGTGATTCCGATTTCCTTGCCTTCGTATCATCTA
GATAATTTTGATAAATATAAGAGCAAAAACCACAGAGTGCTAGAAGCATA
GCAATTACCTTCACCCCATTCATCTCGTCATGAAAAACCAGCAGAGCAGC
TAGAGGTGTAATAGCCAATGATAGAGTACTGATCACGTTGGAGAAGAGGG
ACGACACTGCAAAAATCAACCCTACCACCCCAACAGCACATACCTGCCAA
CTTACGGCCGCCCAAACCAACGTCAGCACATACGAAACTCTTCCGCTTTT
GAAACCCTTCATCTCATCCTGCAATCCTTTCCATTCCCCACTCCCAAACA
GACCCGCAGTCGAAACACATGTCGCCACAAGTGATGTATAAATTTGCATT
TCCAAAACCACATTATATGTTTCCTTTCTCAACACTTTCTGAAACGAAAG
TTGCATAAGGGAGAGTAAAAGAGAGTAAAGAGCAGAAGCCCCAAGGGTAC
AGATAAAGCCAACCAGATACTTCCCCTTGGAAACTCCTGACGGTCCATCT
GAATCTTCATTCACTGCTATCAGAGCAGCGGACAACGAGAGGATAACCAC
GGAGTTGAGGATTAAAGCAGTCAACTTCTGTGAATTAAGCAAATACGAAA
AAACTGCATTGAAAGCTAAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR030182	PUP_plant

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral to membrane

Search form

g.arboreum_cottongen_reftransV1_0006205, g.arboreum_cottongen_reftransV1_0006205 (contig) Gossypium arboreum

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