g.arboreum_cottongen_reftransV1_0016052, g.arboreum_cottongen_reftransV1_0016052 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016052
Unique Nameg.arboreum_cottongen_reftransV1_0016052
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length544
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0016052:1..544 .
Chr3:88985090..88985633 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2PPB7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_034455 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.124e-57
Identity = 104/181 (57.46%), Postives = 134/181 (74.03%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDD-EVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            N  + PR+D+WTT++ R+P+ +     Q++S  + +EP  +DDD EVLD Q   TE+     D A +N + ++E++TYPEVSAI ++  H+NFA+LIHLKAP P  GR       + QNSRAP+DLVTVLDVSGSM+GTKIALLKRAMGFVIQ+L  SDRLSVI FS TARR+FPLRRMT+
Sbjct:  119 NRVNSPRNDSWTTLLGRVPTQQASTAPQLASPNNVAEPAIYDDDDEVLDQQTSVTEDM----DEAVHNLVNTMEIRTYPEVSAIAKSASHDNFAVLIHLKAP-PHSGRLSNNTESSAQNSRAPIDLVTVLDVSGSMSGTKIALLKRAMGFVIQNLSSSDRLSVITFSCTARRIFPLRRMTD 294          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A061FV73_THECC (Zinc finger (C3HC4-type RING finger) family protein OS=Theobroma cacao GN=TCM_043168 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.207e-57
Identity = 108/187 (57.75%), Postives = 137/187 (73.26%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQ-ISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAP------HPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            +P  WPR+DA  TVVRRLP  R D +R+ +  LF   EPG F+DDE LD Q    E    + +++  +S+ ++E+KTYPEVSA PR++ ++NF IL+HLKA       +PS  RN+      +QN RA VDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPLRRM++
Sbjct:  151 DPVGWPRNDALMTVVRRLPPSRRDLSRRHVVPLFQAPEPGIFNDDESLDHQPVIAE----SKNSSDCSSLRTMEIKTYPEVSAAPRSSSYDNFTILVHLKAAGAVASQNPS--RNQASLPQLSQNPRASVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGCNDRLSVIAFSSTARRLFPLRRMSD 331          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: K4C2T8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g056140.2 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.577e-56
Identity = 103/188 (54.79%), Postives = 131/188 (69.68%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDD-EVLDLQHETTEENVFAN---DAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NP DWP+++A  TV+RRLP+ R  P R IS LF   EP  FDDD E L  Q  +TE++       D  ++     ++++TYPEV A+ R++   NF +L+ LKAP        G+ +   S  +Q  RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LGP+DRL+VIAFSSTARRLFPLRRM+E
Sbjct:  148 NPVDWPQNNALMTVIRRLPTTRPTPNRHISPLFQAPEPAIFDDDDESLGHQLNSTEKSASDKSSIDGCESCDNRKVKIETYPEVPAVSRSSASANFTVLVQLKAPGSFSVQEPGKTQVNLSQVSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGPNDRLAVIAFSSTARRLFPLRRMSE 335          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A067LIF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20060 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.267e-54
Identity = 107/186 (57.53%), Postives = 128/186 (68.82%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRL-PSPRLDPTRQ-ISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAP----HPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            N   WP +DA  TVVRRL P PR D  R+ I  L    EP  F+DDE LDLQ    + +    DAA  NS  +IE+K YPEVSA  R+  ++NF +L+HLKA       +  RN+      +Q  RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPLRRM++
Sbjct:  141 NAVGWPHNDALMTVVRRLHPPPRRDLNRRHIVPLLQAPEPTVFNDDESLDLQPTFADRSSDNEDAAPQNSASTIEIKAYPEVSAASRSKSYDNFIVLVHLKAAATITRQNPRRNQASLPQLSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMSD 326          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2NZH0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000515 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.331e-54
Identity = 102/194 (52.58%), Postives = 132/194 (68.04%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISS-----LFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG---------GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            +P +WP++DA   VV R+P P   P R ++      L+  SEPG FDDDE L+ QH  +E +         ++ G++E+KT+PEVSA P +  ++NF +L+HLKA   +           RN+T  +  +Q  RAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPL RMT+
Sbjct:  147 SPVNWPQNDALMAVVHRVPLPLPHPHRDLNRRHVVPLYQASEPGIFDDDESLNHQHAFSERSTCNKSTEDTDAAGAMEIKTFPEVSAAPGSKTYSNFTVLVHLKATAAATAAAAKRQNLSRNQTNLAQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTD 340          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2PPB7_GLYSO2.124e-5757.46Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
A0A061FV73_THECC4.207e-5757.75Zinc finger (C3HC4-type RING finger) family protei... [more]
K4C2T8_SOLLC4.577e-5654.79Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A067LIF0_JATCU1.267e-5457.53Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A0B2NZH0_GLYSO1.331e-5452.58Uncharacterized protein OS=Glycine soja GN=glysoja... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 98..156
e-value: 5.9E-13
score: 48.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 102..156
e-value: 2.5E-8
score: 34.2
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 102..158
score: 9.478
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 100..155
NoneNo IPR availablePANTHERPTHR10579CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATORcoord: 1..158
NoneNo IPR availablePANTHERPTHR10579:SF61C3H4 TYPE ZINC FINGER PROTEIN-RELATEDcoord: 1..158

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016052 ID=g.arboreum_cottongen_reftransV1_0016052; Name=g.arboreum_cottongen_reftransV1_0016052; organism=Gossypium arboreum; type=contig; length=544bp
GTTTCAGTCATCCGGCGAAGAGGAAAGAGGCGACGGGCTGTGGAGGAGAA
TGCAATAACAGAGAGCCGGTCAGATGGCCCAAGATGCTGTATAACAAACC
CCATAGCTCGCTTTAGTAACGCAATCTTGGTACCAGCCATGCTTCCACTA
ACATCAAGAACTGTGACAAGGTCAACTGGTGCCCGAGAATTTTGAGTTGT
AGGGGAAAACATAGTTTCATTTCTTCCCCCACTTGGATGGGGAGCCTTCA
GATGGATTAATATGGCAAAATTATTGTGACAGGTTGCTCTTGGAATGGCA
GAAACTTCAGGATATGTTTTAACTTCTATTGAACCAATAGAGTTATTCTT
AGCAGCATCATTGGCAAAGACATTTTCTTCAGTTGTCTCATGCTGCAGAT
CTAGTACTTCGTCATCATCAAAAGTACCTGGCTCAGAAGTATGAAAGAGT
GAAGAAATCTGCCTAGTTGGATCCAACCGAGGGGAAGGTAGCCGCCGTAC
CACAGTTGTCCACGCATCATCCCGGGGCCAGTCTGCTGGGTTGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A