g.arboreum_cottongen_reftransV1_0016052, g.arboreum_cottongen_reftransV1_0016052 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2PPB7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_034455 PE=4 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.124e-57 Identity = 104/181 (57.46%), Postives = 134/181 (74.03%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDD-EVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 N + PR+D+WTT++ R+P+ + Q++S + +EP +DDD EVLD Q TE+ D A +N + ++E++TYPEVSAI ++ H+NFA+LIHLKAP P GR + QNSRAP+DLVTVLDVSGSM+GTKIALLKRAMGFVIQ+L SDRLSVI FS TARR+FPLRRMT+ Sbjct: 119 NRVNSPRNDSWTTLLGRVPTQQASTAPQLASPNNVAEPAIYDDDDEVLDQQTSVTEDM----DEAVHNLVNTMEIRTYPEVSAIAKSASHDNFAVLIHLKAP-PHSGRLSNNTESSAQNSRAPIDLVTVLDVSGSMSGTKIALLKRAMGFVIQNLSSSDRLSVITFSCTARRIFPLRRMTD 294
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A061FV73_THECC (Zinc finger (C3HC4-type RING finger) family protein OS=Theobroma cacao GN=TCM_043168 PE=4 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 4.207e-57 Identity = 108/187 (57.75%), Postives = 137/187 (73.26%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQ-ISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAP------HPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 +P WPR+DA TVVRRLP R D +R+ + LF EPG F+DDE LD Q E + +++ +S+ ++E+KTYPEVSA PR++ ++NF IL+HLKA +PS RN+ +QN RA VDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPLRRM++ Sbjct: 151 DPVGWPRNDALMTVVRRLPPSRRDLSRRHVVPLFQAPEPGIFNDDESLDHQPVIAE----SKNSSDCSSLRTMEIKTYPEVSAAPRSSSYDNFTILVHLKAAGAVASQNPS--RNQASLPQLSQNPRASVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGCNDRLSVIAFSSTARRLFPLRRMSD 331
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: K4C2T8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g056140.2 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 4.577e-56 Identity = 103/188 (54.79%), Postives = 131/188 (69.68%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDD-EVLDLQHETTEENVFAN---DAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NP DWP+++A TV+RRLP+ R P R IS LF EP FDDD E L Q +TE++ D ++ ++++TYPEV A+ R++ NF +L+ LKAP G+ + S +Q RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LGP+DRL+VIAFSSTARRLFPLRRM+E Sbjct: 148 NPVDWPQNNALMTVIRRLPTTRPTPNRHISPLFQAPEPAIFDDDDESLGHQLNSTEKSASDKSSIDGCESCDNRKVKIETYPEVPAVSRSSASANFTVLVQLKAPGSFSVQEPGKTQVNLSQVSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGPNDRLAVIAFSSTARRLFPLRRMSE 335
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A067LIF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20060 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.267e-54 Identity = 107/186 (57.53%), Postives = 128/186 (68.82%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRL-PSPRLDPTRQ-ISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAP----HPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 N WP +DA TVVRRL P PR D R+ I L EP F+DDE LDLQ + + DAA NS +IE+K YPEVSA R+ ++NF +L+HLKA + RN+ +Q RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPLRRM++ Sbjct: 141 NAVGWPHNDALMTVVRRLHPPPRRDLNRRHIVPLLQAPEPTVFNDDESLDLQPTFADRSSDNEDAAPQNSASTIEIKAYPEVSAASRSKSYDNFIVLVHLKAAATITRQNPRRNQASLPQLSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMSD 326
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2NZH0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000515 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.331e-54 Identity = 102/194 (52.58%), Postives = 132/194 (68.04%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISS-----LFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG---------GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 +P +WP++DA VV R+P P P R ++ L+ SEPG FDDDE L+ QH +E + ++ G++E+KT+PEVSA P + ++NF +L+HLKA + RN+T + +Q RAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPL RMT+ Sbjct: 147 SPVNWPQNDALMAVVHRVPLPLPHPHRDLNRRHVVPLYQASEPGIFDDDESLNHQHAFSERSTCNKSTEDTDAAGAMEIKTFPEVSAAPGSKTYSNFTVLVHLKATAAATAAAAKRQNLSRNQTNLAQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTD 340 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016052 ID=g.arboreum_cottongen_reftransV1_0016052; Name=g.arboreum_cottongen_reftransV1_0016052; organism=Gossypium arboreum; type=contig; length=544bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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