g.arboreum_cottongen_reftransV1_0016052, g.arboreum_cottongen_reftransV1_0016052 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016052
Unique Nameg.arboreum_cottongen_reftransV1_0016052
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length544
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0016052:1..544 .
Chr3:88985090..88985633 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2S0L0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_008299 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.619e-67
Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = -3
Query:    3 PRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTE-ENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG-----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 527
            PR++ W TV+RRLPSP+ D  RQISSL+H +EP  FDDDE LD Q   T  +N   ND      I ++E+KTYPEVS++P++  H+ FA+LIHLKAPH SG     G N T   P  +NSRA VDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVIAFSSTARR+FPLR+MT+
Sbjct:  147 PREEGWATVLRRLPSPQGDAARQISSLYHVTEPAIFDDDEALDQQTSVTHPKNEIDNDV-----INTVEIKTYPEVSSVPKSASHDAFAVLIHLKAPH-SGRKQNIGENNTESPPLVENSRASVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRIFPLRKMTD 321          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A067L9V3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05495 PE=4 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 4.017e-66
Identity = 120/183 (65.57%), Postives = 134/183 (73.22%), Query Frame = -3
Query:    3 NPADWP-RDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNE-TMFSPT-TQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            N   WP RDDAW TV+RRLP  R D  R ISS +H  EP  FDDDE LD   E  E N+     A  +S+  IEVKTYPEVSA+ R+  H+NF +L+HLKAP  SG  N  T F+    QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVIAFSSTARRLF L+RM E
Sbjct:  142 NSVGWPARDDAWMTVLRRLPPARPDSNRHISSFYHAPEPSMFDDDETLDQHGEVGERNMPIKSNADTSSMRKIEVKTYPEVSAVSRSAFHDNFTVLVHLKAPVKSGRCNSSTDFAELPQQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRLFHLQRMNE 324          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0A0KDB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G146940 PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.661e-64
Identity = 109/184 (59.24%), Postives = 137/184 (74.46%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHP----SGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NPA    DD W T+VRR+P PR + TRQI+S+FH  EP  +DDDE LD Q   TE N   + A+ ++    +EV+ YPE+SA+PR+  H++F++L+H+KAP      +  RN+    P  Q SRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSV++FSSTARRLFPL RMT+
Sbjct:  135 NPAGLAPDDPWMTIVRRMPPPRSNTTRQITSIFHGPEPVAYDDDEALDQQPHATERNTTNDGASVHSCTDKVEVEMYPEISAVPRSVSHDHFSVLVHVKAPLSIATVNNSRNQASLPPLNQPSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVVSFSSTARRLFPLCRMTD 318          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: F6HNF6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04440 PE=4 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.007e-63
Identity = 112/184 (60.87%), Postives = 137/184 (74.46%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRN---ETMFSP-TTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NP DW +++   T++RRLP PRLD  R I +L   SEPG F+DDE LD Q    E N    +AA+NN + ++E+KTYPEVSA PR+  ++NF +L+HLKA   + G+N       SP  + N RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG SDRLSVIAFSSTARRLFPLRRMT+
Sbjct:  135 NPVDWHQNNDLMTIIRRLPPPRLDSNRNIMALHQASEPGVFNDDESLDHQPVPAERNSSNGNAAENNPVRTVEIKTYPEVSAAPRSKSYDNFTVLVHLKAAVANTGQNIQRNMSNSPLNSHNPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLRRMTD 318          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A5BTD1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016246 PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.158e-63
Identity = 112/184 (60.87%), Postives = 137/184 (74.46%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRN---ETMFSP-TTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NP DW +++   T++RRLP PRLD  R I +L   SEPG F+DDE LD Q    E N    +AA+NN + ++E+KTYPEVSA PR+  ++NF +L+HLKA   + G+N       SP  + N RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG SDRLSVIAFSSTARRLFPLRRMT+
Sbjct:  140 NPVDWHQNNDLMTIIRRLPPPRLDSNRNIMALHQASEPGVFNDDESLDHQPVPAERNSSNGNAAENNPVRTVEIKTYPEVSAAPRSKSYDNFTVLVHLKAAVANTGQNIQRNMSNSPLNSHNPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLRRMTD 323          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0A0LXX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G124000 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 5.587e-61
Identity = 112/183 (61.20%), Postives = 137/183 (74.86%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRN---ETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            N  DWP+DD+W TV+RR+  P +D +RQI++L H  EP  FDDDEVLD Q +         DA  + S G+IEVKTYPEVSA+ R+  H+NF +L+H+KA   +  ++       S  +Q+SRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVI+FSS ARRLFPLRRMTE
Sbjct:  148 NQIDWPQDDSWMTVLRRIRPPPIDASRQIAALSHGPEPSLFDDDEVLDHQSDIPNGETSVVDAI-DGSTGTIEVKTYPEVSAVARSAVHDNFTVLVHIKASLANQRQHCCENQSSSLLSQSSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVISFSSAARRLFPLRRMTE 329          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: M1C509_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023339 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.235e-59
Identity = 107/189 (56.61%), Postives = 137/189 (72.49%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGS-----IEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NP DWP+++A  TV+RRLP+ R  P R IS LF   EP  FDDDE L  Q  +TE++  A+D +  +S  S     ++++TYPEV A+ R++  +NF +L+ LKAP        G+N+   S  +Q  RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LGP+DRL+VIAFSSTARRLFPLRRM+E
Sbjct:  148 NPVDWPQNNALMTVIRRLPTTRPTPNRHISPLFQAPEPAIFDDDESLGHQLNSTEKS--ASDKSSIDSCESCDNRKVKIETYPEVPAVSRSSASDNFTVLVQLKAPGSVSVQEPGKNQVNLSQVSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGPNDRLAVIAFSSTARRLFPLRRMSE 334          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B0N5L1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_31999 PE=4 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.178e-58
Identity = 109/185 (58.92%), Postives = 134/185 (72.43%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQ-ISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAP----HPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NP  WP++DA  TVVRRLP PR D +R+ +  LF   EPG F+DDE LD      E    + +A+ N+S+ +IE+KTYPEV   PR++ ++NF IL+HLKA     + S  RN        QN RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPLRRM++
Sbjct:  154 NPVGWPQNDALMTVVRRLPPPRRDLSRRHVVPLFQAPEPGVFNDDESLDHLPVVAE----STNASDNSSLRTIEIKTYPEVLEAPRSSSYDNFTILLHLKAAATVANQSSSRNHASLPQLYQNPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMSD 334          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: W9QZV9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012261 PE=4 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.732e-58
Identity = 107/184 (58.15%), Postives = 129/184 (70.11%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKA----PHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            +P  WP++DA  T+VRRLPSPR    R +  L+   EPG FDDDE L  Q    E N F  DAA N    ++E+KTYPEVSA PR+  +++F +L+HLKA       +  R+        Q  RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPLRRMT+
Sbjct:  154 SPVGWPQNDAVMTLVRRLPSPR----RHVVPLYQAPEPGIFDDDESLGDQAAFFERNTFNKDAADNIPSRTLEIKTYPEVSAAPRSKSYDDFTVLVHLKAAATIKRQNLSRHHASLQQLCQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMTD 333          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2QJ59_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_021086 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 7.445e-58
Identity = 107/183 (58.47%), Postives = 136/183 (74.32%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDD-EVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGR--NETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            N  + PR+D+WTT++ R+PS ++    Q +S    +EP  FDDD EVLD Q   T++     + A +N + ++E+KTYPEVSA+ ++  H NFA+LIHLKAP P  GR  N+T  S + QNSRAP+DLVTVLDVSGSM+GTKIALLKRAMGFVIQ+L  SDRLSVI FS TARR+FPLRRMT+
Sbjct:   65 NRVNSPRNDSWTTLLGRVPSQQVGTAPQHASSNDVTEPALFDDDDEVLDQQTSVTDDM----NEADHNVVNTMEIKTYPEVSAVAKSASHENFAVLIHLKAP-PHSGRPSNDTESSASAQNSRAPIDLVTVLDVSGSMSGTKIALLKRAMGFVIQNLSSSDRLSVITFSCTARRIFPLRRMTD 242          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2S0L0_GLYSO2.619e-6764.64Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
A0A067L9V3_JATCU4.017e-6665.57Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A0A0KDB9_CUCSA1.661e-6459.24Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
F6HNF6_VITVI1.007e-6360.87Putative uncharacterized protein OS=Vitis vinifera... [more]
A5BTD1_VITVI1.158e-6360.87Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0A0LXX5_CUCSA5.587e-6161.20Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
M1C509_SOLTU1.235e-5956.61Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0B0N5L1_GOSAR1.178e-5858.92Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
W9QZV9_9ROSA1.732e-5858.15Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A0B2QJ59_GLYSO7.445e-5858.47Uncharacterized protein (Fragment) OS=Glycine soja... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 98..156
e-value: 5.9E-13
score: 48.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 102..156
e-value: 2.5E-8
score: 34.2
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 102..158
score: 9.478
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 100..155
NoneNo IPR availablePANTHERPTHR10579CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATORcoord: 1..158
NoneNo IPR availablePANTHERPTHR10579:SF61C3H4 TYPE ZINC FINGER PROTEIN-RELATEDcoord: 1..158

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016052 ID=g.arboreum_cottongen_reftransV1_0016052; Name=g.arboreum_cottongen_reftransV1_0016052; organism=Gossypium arboreum; type=contig; length=544bp
GTTTCAGTCATCCGGCGAAGAGGAAAGAGGCGACGGGCTGTGGAGGAGAA
TGCAATAACAGAGAGCCGGTCAGATGGCCCAAGATGCTGTATAACAAACC
CCATAGCTCGCTTTAGTAACGCAATCTTGGTACCAGCCATGCTTCCACTA
ACATCAAGAACTGTGACAAGGTCAACTGGTGCCCGAGAATTTTGAGTTGT
AGGGGAAAACATAGTTTCATTTCTTCCCCCACTTGGATGGGGAGCCTTCA
GATGGATTAATATGGCAAAATTATTGTGACAGGTTGCTCTTGGAATGGCA
GAAACTTCAGGATATGTTTTAACTTCTATTGAACCAATAGAGTTATTCTT
AGCAGCATCATTGGCAAAGACATTTTCTTCAGTTGTCTCATGCTGCAGAT
CTAGTACTTCGTCATCATCAAAAGTACCTGGCTCAGAAGTATGAAAGAGT
GAAGAAATCTGCCTAGTTGGATCCAACCGAGGGGAAGGTAGCCGCCGTAC
CACAGTTGTCCACGCATCATCCCGGGGCCAGTCTGCTGGGTTGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A