g.arboreum_cottongen_reftransV1_0016052, g.arboreum_cottongen_reftransV1_0016052 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2S0L0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_008299 PE=4 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.619e-67 Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = -3 Query: 3 PRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTE-ENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG-----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 527 PR++ W TV+RRLPSP+ D RQISSL+H +EP FDDDE LD Q T +N ND I ++E+KTYPEVS++P++ H+ FA+LIHLKAPH SG G N T P +NSRA VDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVIAFSSTARR+FPLR+MT+ Sbjct: 147 PREEGWATVLRRLPSPQGDAARQISSLYHVTEPAIFDDDEALDQQTSVTHPKNEIDNDV-----INTVEIKTYPEVSSVPKSASHDAFAVLIHLKAPH-SGRKQNIGENNTESPPLVENSRASVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRIFPLRKMTD 321
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A067L9V3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05495 PE=4 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 4.017e-66 Identity = 120/183 (65.57%), Postives = 134/183 (73.22%), Query Frame = -3 Query: 3 NPADWP-RDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNE-TMFSPT-TQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 N WP RDDAW TV+RRLP R D R ISS +H EP FDDDE LD E E N+ A +S+ IEVKTYPEVSA+ R+ H+NF +L+HLKAP SG N T F+ QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVIAFSSTARRLF L+RM E Sbjct: 142 NSVGWPARDDAWMTVLRRLPPARPDSNRHISSFYHAPEPSMFDDDETLDQHGEVGERNMPIKSNADTSSMRKIEVKTYPEVSAVSRSAFHDNFTVLVHLKAPVKSGRCNSSTDFAELPQQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRLFHLQRMNE 324
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0A0KDB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G146940 PE=4 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 1.661e-64 Identity = 109/184 (59.24%), Postives = 137/184 (74.46%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHP----SGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NPA DD W T+VRR+P PR + TRQI+S+FH EP +DDDE LD Q TE N + A+ ++ +EV+ YPE+SA+PR+ H++F++L+H+KAP + RN+ P Q SRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSV++FSSTARRLFPL RMT+ Sbjct: 135 NPAGLAPDDPWMTIVRRMPPPRSNTTRQITSIFHGPEPVAYDDDEALDQQPHATERNTTNDGASVHSCTDKVEVEMYPEISAVPRSVSHDHFSVLVHVKAPLSIATVNNSRNQASLPPLNQPSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVVSFSSTARRLFPLCRMTD 318
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: F6HNF6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04440 PE=4 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.007e-63 Identity = 112/184 (60.87%), Postives = 137/184 (74.46%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRN---ETMFSP-TTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NP DW +++ T++RRLP PRLD R I +L SEPG F+DDE LD Q E N +AA+NN + ++E+KTYPEVSA PR+ ++NF +L+HLKA + G+N SP + N RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG SDRLSVIAFSSTARRLFPLRRMT+ Sbjct: 135 NPVDWHQNNDLMTIIRRLPPPRLDSNRNIMALHQASEPGVFNDDESLDHQPVPAERNSSNGNAAENNPVRTVEIKTYPEVSAAPRSKSYDNFTVLVHLKAAVANTGQNIQRNMSNSPLNSHNPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLRRMTD 318
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A5BTD1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016246 PE=4 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.158e-63 Identity = 112/184 (60.87%), Postives = 137/184 (74.46%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRN---ETMFSP-TTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NP DW +++ T++RRLP PRLD R I +L SEPG F+DDE LD Q E N +AA+NN + ++E+KTYPEVSA PR+ ++NF +L+HLKA + G+N SP + N RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG SDRLSVIAFSSTARRLFPLRRMT+ Sbjct: 140 NPVDWHQNNDLMTIIRRLPPPRLDSNRNIMALHQASEPGVFNDDESLDHQPVPAERNSSNGNAAENNPVRTVEIKTYPEVSAAPRSKSYDNFTVLVHLKAAVANTGQNIQRNMSNSPLNSHNPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLRRMTD 323
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0A0LXX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G124000 PE=4 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 5.587e-61 Identity = 112/183 (61.20%), Postives = 137/183 (74.86%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRN---ETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 N DWP+DD+W TV+RR+ P +D +RQI++L H EP FDDDEVLD Q + DA + S G+IEVKTYPEVSA+ R+ H+NF +L+H+KA + ++ S +Q+SRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVI+FSS ARRLFPLRRMTE Sbjct: 148 NQIDWPQDDSWMTVLRRIRPPPIDASRQIAALSHGPEPSLFDDDEVLDHQSDIPNGETSVVDAI-DGSTGTIEVKTYPEVSAVARSAVHDNFTVLVHIKASLANQRQHCCENQSSSLLSQSSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVISFSSAARRLFPLRRMTE 329
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: M1C509_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023339 PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 1.235e-59 Identity = 107/189 (56.61%), Postives = 137/189 (72.49%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGS-----IEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NP DWP+++A TV+RRLP+ R P R IS LF EP FDDDE L Q +TE++ A+D + +S S ++++TYPEV A+ R++ +NF +L+ LKAP G+N+ S +Q RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LGP+DRL+VIAFSSTARRLFPLRRM+E Sbjct: 148 NPVDWPQNNALMTVIRRLPTTRPTPNRHISPLFQAPEPAIFDDDESLGHQLNSTEKS--ASDKSSIDSCESCDNRKVKIETYPEVPAVSRSSASDNFTVLVQLKAPGSVSVQEPGKNQVNLSQVSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGPNDRLAVIAFSSTARRLFPLRRMSE 334
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B0N5L1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_31999 PE=4 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.178e-58 Identity = 109/185 (58.92%), Postives = 134/185 (72.43%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQ-ISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAP----HPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NP WP++DA TVVRRLP PR D +R+ + LF EPG F+DDE LD E + +A+ N+S+ +IE+KTYPEV PR++ ++NF IL+HLKA + S RN QN RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPLRRM++ Sbjct: 154 NPVGWPQNDALMTVVRRLPPPRRDLSRRHVVPLFQAPEPGVFNDDESLDHLPVVAE----STNASDNSSLRTIEIKTYPEVLEAPRSSSYDNFTILLHLKAAATVANQSSSRNHASLPQLYQNPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMSD 334
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: W9QZV9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012261 PE=4 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.732e-58 Identity = 107/184 (58.15%), Postives = 129/184 (70.11%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKA----PHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 +P WP++DA T+VRRLPSPR R + L+ EPG FDDDE L Q E N F DAA N ++E+KTYPEVSA PR+ +++F +L+HLKA + R+ Q RAPVDLVTVLD+SGSMAGTK+ALLKRAMGFVIQ+LG +DRLSVIAFSSTARRLFPLRRMT+ Sbjct: 154 SPVGWPQNDAVMTLVRRLPSPR----RHVVPLYQAPEPGIFDDDESLGDQAAFFERNTFNKDAADNIPSRTLEIKTYPEVSAAPRSKSYDDFTVLVHLKAAATIKRQNLSRHHASLQQLCQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMTD 333
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2QJ59_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_021086 PE=4 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 7.445e-58 Identity = 107/183 (58.47%), Postives = 136/183 (74.32%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDD-EVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGR--NETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 N + PR+D+WTT++ R+PS ++ Q +S +EP FDDD EVLD Q T++ + A +N + ++E+KTYPEVSA+ ++ H NFA+LIHLKAP P GR N+T S + QNSRAP+DLVTVLDVSGSM+GTKIALLKRAMGFVIQ+L SDRLSVI FS TARR+FPLRRMT+ Sbjct: 65 NRVNSPRNDSWTTLLGRVPSQQVGTAPQHASSNDVTEPALFDDDDEVLDQQTSVTDDM----NEADHNVVNTMEIKTYPEVSAVAKSASHENFAVLIHLKAP-PHSGRPSNDTESSASAQNSRAPIDLVTVLDVSGSMSGTKIALLKRAMGFVIQNLSSSDRLSVITFSCTARRIFPLRRMTD 242 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016052 ID=g.arboreum_cottongen_reftransV1_0016052; Name=g.arboreum_cottongen_reftransV1_0016052; organism=Gossypium arboreum; type=contig; length=544bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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