g.arboreum_cottongen_reftransV1_0010994, g.arboreum_cottongen_reftransV1_0010994 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A096RWH6_MAIZE (Uncharacterized protein OS=Zea mays PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.162e-9 Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = -3 Query: 507 QWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 770 QW+PP E +K+N D +F K N + G I+R+++GF I + ++E +T L + A NLG + I+LE D LN+VK L Sbjct: 42 QWQPPPEYVLKINFDGTFTKENRKGAWGFIIRDHSGFGIAAGAGTMEYAFQALHTKTEGCLAALQSAFNLGIRNIVLESDCLNLVKAL 129
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: M5VU98_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022115mg PE=4 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 3.763e-9 Identity = 46/208 (22.12%), Postives = 81/208 (38.94%), Query Frame = -3 Query: 501 EAMCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINE-IKMLDNNLVRNHRIQD-LQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRK 1118 + MC CG+ ES HVL C A + ++ + T H H GV++ + ++ F + +++E I D R++D ++W P ++K N D +F + R G++ R+ +G + + S+ + E A VA A +LG I EGD VV +++ Sbjct: 1501 QDMCMFCGDITESALHVLAMCPFA---VATWNISLLTRHA--------------------------------------HQGVQRSPHEVVGFAQQYVHEFITANDTPSKVTDRVRDPVRWAAPPSGRLKFNFDGAFDPTSGRGAVGVVARDADGGFVAAVAKSVGEVLSAEHAEILAAREGVALALSLGTASPIFEGDSAVVVSAIKR 1667 HSP 2 Score: 31.187 bits (69), Expect = 3.763e-9 Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = -1 Query: 1139 IPSKIKINLWRITNNFMPTLSNL 1207 +P+K+KI WR+ ++ +PT +NL Sbjct: 1471 VPTKLKIFAWRVAHDILPTKANL 1493
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: I1I4I2_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI3G28170 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 4.167e-9 Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = -3 Query: 507 LVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 800 LV H++ W PP VK+N+D SF + +N A G I+R++ G V+GS +IEN D + E A LH + +L II+E D +V++ + Sbjct: 3 LVLLHKLLQQTWDPPDATYVKLNVDGSFLQQDNSAAWGAILRDHRGVVLGSAWSTIENCIDADMAEASACLHGIQALRHLSPLPIIVECDSSSVIQAI 100
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: B8BBX0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28249 PE=4 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 4.357e-9 Identity = 60/232 (25.86%), Postives = 101/232 (43.53%), Query Frame = -3 Query: 492 AMCSTCGEKEESTAHVLCDCYVAKLVLQKM-DVQIATMHENTEW--KIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYH--AGVRQGINN--IISFIKAFINEIKMLDNNLVR--------------NH-RIQD--LQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMK 1115 +MCS CG +EE AH LC C AK + + M + T+ + W W+ D + + ++R L + I + R+ H A V ++ I S+I + + + D NL + NH R+ ++W P +K+N+D S+ + G ++RN+ G +I + S+ E A + A F II+E D L +VK + +Q K Sbjct: 1002 SMCSICGTEEEDVAHALCRCPHAKYLWEVMRRAKAITVQADRNWTGADWIFDISERISKEERPTLLMMLWRIWYVRNEITHGKAAVPAEVSQRFISSYITSLLEIRQFPDANLCKGKHVIRCAAAGAQVNHPRVNSVPVRWVRPQAGWMKLNVDGSYDPRDGSGGIGAVLRNSEGKLIFAACGSMCRPVSALEAELVACKEGIILALQWTFLPIIVETDCLELVKLVAEQGK 1233 HSP 2 Score: 28.4906 bits (62), Expect = 4.357e-9 Identity = 12/34 (35.29%), Postives = 21/34 (61.76%), Query Frame = -1 Query: 1106 IPSKIKINLWRITNNFMPTLSNLKFKNSYLKRCA 1207 +P K++I +WR +N + T+ N K K L+ C+ Sbjct: 971 VPQKVRIFIWRAASNSLATMVNKKKKR--LEHCS 1002
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2LZX5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G176100 PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 5.497e-9 Identity = 34/118 (28.81%), Postives = 63/118 (53.39%), Query Frame = -3 Query: 504 IISFIKAFINEIKMLDNNLVRNHRIQDLQW-KPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLR 854 +I + ++ E+ + L+R R+ ++W +PPS +K+N D F + + + +++RN G V+GS ++I + LH V LGF Y+I+EGD L V++K++ Sbjct: 4 LIQQVDTYLLELDVAQVKLLR--RLVGVEWWQPPSGYCLKINFDADFHSLSKTSYAEVVIRNRYGIVLGSHIVVYKHIHSTFVALPTTCLHAVRLGLALGFSYVIVEGDSLTVLRKVQ 119 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010994 ID=g.arboreum_cottongen_reftransV1_0010994; Name=g.arboreum_cottongen_reftransV1_0010994; organism=Gossypium arboreum; type=contig; length=1210bpback to top |