g.arboreum_cottongen_reftransV1_0010994, g.arboreum_cottongen_reftransV1_0010994 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010994
Unique Nameg.arboreum_cottongen_reftransV1_0010994
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0010994:1..1210 .
Chr12:145445565..145446880 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A096RWH6_MAIZE (Uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.162e-9
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = -3
Query:  507 QWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 770
            QW+PP E  +K+N D +F K N +   G I+R+++GF I +   ++E        +T   L  +  A NLG + I+LE D LN+VK L
Sbjct:   42 QWQPPPEYVLKINFDGTFTKENRKGAWGFIIRDHSGFGIAAGAGTMEYAFQALHTKTEGCLAALQSAFNLGIRNIVLESDCLNLVKAL 129          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: M5VU98_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022115mg PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.763e-9
Identity = 46/208 (22.12%), Postives = 81/208 (38.94%), Query Frame = -3
Query:  501 EAMCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINE-IKMLDNNLVRNHRIQD-LQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRK 1118
            + MC  CG+  ES  HVL  C  A   +   ++ + T H                                       H GV++  + ++ F + +++E I   D       R++D ++W  P   ++K N D +F   + R   G++ R+ +G  + +   S+  +      E  A    VA A +LG    I EGD   VV  +++
Sbjct: 1501 QDMCMFCGDITESALHVLAMCPFA---VATWNISLLTRHA--------------------------------------HQGVQRSPHEVVGFAQQYVHEFITANDTPSKVTDRVRDPVRWAAPPSGRLKFNFDGAFDPTSGRGAVGVVARDADGGFVAAVAKSVGEVLSAEHAEILAAREGVALALSLGTASPIFEGDSAVVVSAIKR 1667          

HSP 2 Score: 31.187 bits (69), Expect = 3.763e-9
Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = -1
Query: 1139 IPSKIKINLWRITNNFMPTLSNL 1207
            +P+K+KI  WR+ ++ +PT +NL
Sbjct: 1471 VPTKLKIFAWRVAHDILPTKANL 1493          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: I1I4I2_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI3G28170 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.167e-9
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = -3
Query:  507 LVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 800
            LV  H++    W PP    VK+N+D SF + +N A  G I+R++ G V+GS   +IEN  D  + E  A LH +    +L    II+E D  +V++ +
Sbjct:    3 LVLLHKLLQQTWDPPDATYVKLNVDGSFLQQDNSAAWGAILRDHRGVVLGSAWSTIENCIDADMAEASACLHGIQALRHLSPLPIIVECDSSSVIQAI 100          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: B8BBX0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28249 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.357e-9
Identity = 60/232 (25.86%), Postives = 101/232 (43.53%), Query Frame = -3
Query:  492 AMCSTCGEKEESTAHVLCDCYVAKLVLQKM-DVQIATMHENTEW--KIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYH--AGVRQGINN--IISFIKAFINEIKMLDNNLVR--------------NH-RIQD--LQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMK 1115
            +MCS CG +EE  AH LC C  AK + + M   +  T+  +  W    W+ D  +  + ++R  L +    I + R+   H  A V   ++   I S+I + +   +  D NL +              NH R+    ++W  P    +K+N+D S+   +     G ++RN+ G +I +   S+         E  A    +  A    F  II+E D L +VK + +Q K
Sbjct: 1002 SMCSICGTEEEDVAHALCRCPHAKYLWEVMRRAKAITVQADRNWTGADWIFDISERISKEERPTLLMMLWRIWYVRNEITHGKAAVPAEVSQRFISSYITSLLEIRQFPDANLCKGKHVIRCAAAGAQVNHPRVNSVPVRWVRPQAGWMKLNVDGSYDPRDGSGGIGAVLRNSEGKLIFAACGSMCRPVSALEAELVACKEGIILALQWTFLPIIVETDCLELVKLVAEQGK 1233          

HSP 2 Score: 28.4906 bits (62), Expect = 4.357e-9
Identity = 12/34 (35.29%), Postives = 21/34 (61.76%), Query Frame = -1
Query: 1106 IPSKIKINLWRITNNFMPTLSNLKFKNSYLKRCA 1207
            +P K++I +WR  +N + T+ N K K   L+ C+
Sbjct:  971 VPQKVRIFIWRAASNSLATMVNKKKKR--LEHCS 1002          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2LZX5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G176100 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.497e-9
Identity = 34/118 (28.81%), Postives = 63/118 (53.39%), Query Frame = -3
Query:  504 IISFIKAFINEIKMLDNNLVRNHRIQDLQW-KPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLR 854
            +I  +  ++ E+ +    L+R  R+  ++W +PPS   +K+N D  F   +  + + +++RN  G V+GS     ++I    +      LH V     LGF Y+I+EGD L V++K++
Sbjct:    4 LIQQVDTYLLELDVAQVKLLR--RLVGVEWWQPPSGYCLKINFDADFHSLSKTSYAEVVIRNRYGIVLGSHIVVYKHIHSTFVALPTTCLHAVRLGLALGFSYVIVEGDSLTVLRKVQ 119          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A096RWH6_MAIZE3.162e-937.50Uncharacterized protein OS=Zea mays PE=4 SV=1[more]
M5VU98_PRUPE3.763e-922.12Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
I1I4I2_BRADI4.167e-935.71Uncharacterized protein OS=Brachypodium distachyon... [more]
B8BBX0_ORYSI4.357e-925.86Putative uncharacterized protein OS=Oryza sativa s... [more]
A0A0D2LZX5_GOSRA5.497e-928.81Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13456RVT_3coord: 54..134
e-value: 1.1E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 4..132

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010994 ID=g.arboreum_cottongen_reftransV1_0010994; Name=g.arboreum_cottongen_reftransV1_0010994; organism=Gossypium arboreum; type=contig; length=1210bp
CTGAAGCTCCTCAATTCAAATCCTAATAAATAAAAGCAACAAGAAAAATC
CTAAAATCAAAAAAACCTTTCCCCTTCCCTTCTCATTTTTAACTACATCT
GTTGAAGAGTTTCTTTTGCTTGAGAACTTGGAACCCACAAGATTTTGTGC
TAAAACAATTTTCTTCCCACAGTTCCTTCTATTAACTGAGCTCATCGGAG
GCCTTGTTCTTTCTTCTTCGGACTCAGACCCTTAAAACTGTCGTCGACTC
TGTATCCTCCTTTTTCCTTTCTTTGTTCCTTTGTCTCTCTCTTTTTTTTT
TTTAGTTTTGCGATTTTGGTGACTGTAGTTCTCATAAATAAGAAACCAGT
GTTCTTTTTTGTGTTTTTGTGCCCTAATTCCATACCCCTTTGATCCTTCT
GAATGAATGGATCGTCCTCCCTCGGAGTTTTTTTCCACCCAAAAGGTCGG
CAAATCCCTTCCTTTTCCCCACATTACGATCACATGTGCTGCTTCATTTG
CTTCCTGAGCTTTTTTACGACATTCAGTGGATCTCCTTCTAAAATGATGT
ATTGAAACCCTAGGTTTTCTGCGAAGGCTACTTCGTGAAGGCGTGCATAG
GTTTCTACTATTGTTGGATCTCGTATGTTCTCAATCGAGTAGGTGCATGA
ACCGATTACAAAACCGTTGTTATTTCTTACTATAATTCCAGAAACTGCCC
TATTATTTGGCTTTTGAAAACTGGTGTCGATATTAACTTTAACTTGGTCT
TCTGATGGGGGTTTCCATTGTAGATCTTGTATTCTGTGGTTTCTTACAAG
ATTATTGTCCAACATTTTAATTTCGTTTATAAAGGCTTTGATGAAACTTA
TGATGTTGTTAATACCTTGTCGAACACCTGCATGATAAAACAAGTCTCTA
TTGTGTCAAATCGCCTAGAATGCGATTGCTAAACATATTCTCTGTTTTGT
ATTATTTGACTTAAAAGTATCGGTTAACCAAATTTTCCACTCTGTGTTTT
CATGCATGGTTGCAATTTGAACATCCATCTTTTGGAGAACAAGCTTTGCA
ACGTAACAATCGCATAAGACATGTGCAGTTGATTCTTCTTTTTCACCACA
TGTCGAGCACATCGCTTCAAATATGAGTTTTTGAATTTAAGATTACTTAG
AGTAGGCATGAAATTGTTTGTAATCCGCCATAGGTTGATTTTAATTTTGC
TGGGAATTTT
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