g.arboreum_cottongen_reftransV1_0010994, g.arboreum_cottongen_reftransV1_0010994 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2TWL8_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_008G037100 PE=4 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.240e-12 Identity = 39/127 (30.71%), Postives = 73/127 (57.48%), Query Frame = -3 Query: 498 GVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQ 878 G Q +N I + I++F+ E+ ++ L N R+ +W+ P V+VN D +F++ ++ SG+++RNN G V+GS ++ D E A L+ + FA ++GF +++EGD ++ K +K+ Sbjct: 43 GKNQIVNEIRTKIESFVLEMTVIKEKLPVNQRLMSSKWQHPDRRSVRVNFDAAFRQHLKQSSSGVVIRNNMGLVMGSGVVFHRHVADAFAAEALACLNAITFARDMGFMKVVVEGDSRTIIVKAQKR 169
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2TX68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G352100 PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.734e-11 Identity = 41/136 (30.15%), Postives = 77/136 (56.62%), Query Frame = -3 Query: 498 RDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTI--VETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQ 899 R+ H Q + + I FI ++ E + +++ L R+ + +W+PP D++K+N D +F K + GI+ R+ G ++ +C + N R PT VE A L V +LG++ +++EGD L+++KKL+++ Sbjct: 5 RNKILHEKKVQSVEDTIFFICKYLREWEEVNHRLP-GQRVVEERWRPPKPDEIKINFDGAFDKQTFKFGIGIVCRDPEGKIL-NCRSKVNN-RIPTTFAVEALACLQAVRMGLDLGYRRVVVEGDALSIIKKLQRK 137
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: M5XK32_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016563mg PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 8.179e-11 Identity = 45/206 (21.84%), Postives = 83/206 (40.29%), Query Frame = -3 Query: 501 MCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVR-NHRIQD-LQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRK 1112 MC CG+ ES HVL C A + ++ + T H H GV++ ++++ F + +++E ++ + R++D ++W PS ++K N D +F + R G++ R+ +G + + S+ + E A VA A +LG I EGD VV +++ Sbjct: 654 MCMFCGDITESALHVLAMCPFA---VATWNISLLTRHA--------------------------------------HQGVQRSPHDVVGFAQQYVHEFITANDTPSKVTDRVRDPVRWAAPSSGRLKFNFDGAFDPTSGRGAVGVVARDADGGFVAAVAKSVGEVLSAEHAEILAAREGVALALSLGTASPIFEGDSAVVVSAVKR 818 HSP 2 Score: 30.8018 bits (68), Expect = 8.179e-11 Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = -1 Query: 1139 IPSKIKINLWRITNNFMPTLSNL 1207 +P+K+KI WR+ ++ +PT +NL Sbjct: 622 VPTKLKIFAWRVAHDILPTKANL 644
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: Q0E0A4_ORYSJ (Os02g0566300 protein OS=Oryza sativa subsp. japonica GN=Os02g0566300 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.046e-10 Identity = 49/222 (22.07%), Postives = 93/222 (41.89%), Query Frame = -3 Query: 492 MCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENT------EWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQ---------WKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMK 1112 +C CG E++ H L C ++K V MD +A + T +W ++ D K + R L ++ AI R H + + FIK+++ ++ +++ L +QD + W PP ED VK+N+D + + N+ G + +G + + E + D +E +A A + + D L V++ + K+ + Sbjct: 6 ICKVCGAAEDTWDHALLHCTMSKCVWALMDNDLAELIATTNIKDPKDWLFYMLDVLKPGD---RTKLLVSCWAIWRARRRVLHDEFYESPLTRMHFIKSYLADMDLINIPLC----LQDKKHLTYPKVPVWMPPPEDCVKINVDAAISRWGNKGAVGAVCHTVSGEFVAASAMVWEGLSDSATLEALGCNEGLAIAMGCNMSEVCIASDCLEVIRSISKKPR 220
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: I1P1F5_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 4.846e-10 Identity = 49/222 (22.07%), Postives = 92/222 (41.44%), Query Frame = -3 Query: 492 MCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENT------EWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQ---------WKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMK 1112 +C CG E++ H L C ++K V MD +A + T +W ++ D K + R L ++ AI R H + + FIK+++ ++ ++ L +QD + W PP ED VK+N+D + + N+ G + +G + + E + D +E +A A + + D L V++ + K+ + Sbjct: 6 ICKVCGAAEDTWDHALLHCTMSKCVWALMDNDLAELIATTNIKDPKDWLFYMLDVLKPGD---RTKLLVSCWAIWRARRRVLHDEFYESPLTRMHFIKSYLADMDLIIIPLC----LQDKKHLTYPKVPVWMPPPEDYVKINVDAAISRWGNKGAVGAVCHTVSGEFVAASAMVWEGLSDSATLEALGCNEGLAIAMGCNMSEVCIASDCLEVIRSISKKPR 220
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2VHE5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_013G190000 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.769e-10 Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = -3 Query: 492 RIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIEN-IRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMK 785 R++D +WKPP ++ +N D +F K N+R+ GI+ R+++G ++ +C + N + P VE A L N F+ +++EGD LN++KK++ K Sbjct: 1 RVEDERWKPPDPIEININFDGAFDKQNSRSGIGIVCRDSSGKIL-NCRVMVNNRVPTPFAVEALACLQAAKAGLNPRFRRVVIEGDALNIIKKVKSNYK 98
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: K4A0B9_SETIT (Uncharacterized protein OS=Setaria italica GN=Si032308m.g PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.455e-10 Identity = 51/204 (25.00%), Postives = 87/204 (42.65%), Query Frame = -3 Query: 507 CSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENTEW---KIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 1109 C CG +EE+ H C A V +++ + + + WL D ++ ++ + I I R+ G R G + I + +L I+ +W PP V VN+D + +NR G++ R++NG + +C + I +P + E A H V F L + ++I+ D L+VVKKL Sbjct: 63 CGLCG-REENVTHAFLTCQYASEVWKELKAKSGLRRRLKNFCSPRQWLFDYLAASTEEEATTMTITLWHIWETRN-----GARNGEGQLHPHC------IVEKNPSLCWCDPIRPKKWAPPPGVWVMVNVDAAVFAESNRMGIGLVFRDHNGNFLAACRQGLNGITEPEVAEATALRHAVHFVSALPYNHVIVASDCLSVVKKL 254
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: I1IJK4_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI4G10670 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.533e-9 Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = -3 Query: 498 WKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNG-FVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQ 767 W+ P ED VK+N+D SF R +G +R++ G F+ GSC Y IENI D E +A + A LG +I+ D ++VV+ ++ + Sbjct: 21 WERPKEDYVKLNVDASFLADEGRGSTGAFIRDHQGVFLAGSC-YGIENISDAPSAEAWALKDGLLLAGELGCSRLIVNSDCMDVVQTMQDR 110
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: C5WNV7_SORBI (Putative uncharacterized protein Sb01g011130 OS=Sorghum bicolor GN=Sb01g011130 PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.306e-9 Identity = 53/208 (25.48%), Postives = 93/208 (44.71%), Query Frame = -3 Query: 504 CSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHE---NTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDN--NLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVS-GIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLR 1109 C C + E H+ C +A+ V + + ++T E N I + + + +++ + +A R+ R+ + ++ ++ E++ + N N Q +W P D +K+N D SF P RA S G+++R++ G VI S + ++ P E A L V A NLG +ILE D L VVK ++ Sbjct: 183 CPVCNQVGEDGGHLFFKCGMARQVWELLG--LSTEREVLANFYTPIDVVEFILRASESRKLMMIVALWYTWSERNAIREEDRRRSPQTLARCVELYVQEMRTTETTANPTANQEQQQYKWSKPPVDILKLNCDGSF-SPETRAGSWGVLIRDHEGDVIMSGRGRVNHLMTPMQAELIACLQGVQLAANLGIGRLILETDALEVVKAIK 387 HSP 2 Score: 22.3274 bits (46), Expect = 2.306e-9 Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = -1 Query: 1139 PSKIKINLWRITNNFMPTLSNL 1204 P+KIK LWR +N P NL Sbjct: 151 PNKIKHFLWRFLHNSHPLRDNL 172
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0A8XVJ3_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.597e-9 Identity = 63/215 (29.30%), Postives = 101/215 (46.98%), Query Frame = -3 Query: 504 MCSTCGEKEESTAHVLCDC-YVAKLVLQ-KMDVQIATMHEN-TEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQG-----INNIISFIKAFINEIKM-LDNNLVRNH--RIQDLQWKPPSEDQVKVNIDTS-FQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLR 1112 +C CG +EE+ HV C Y A++ + K +AT H N WL D + ++ LAI+F I R+ G+R G + I I A+ + + M L + + N +W PP E V VN+D + F KP+ + GI++R++N + +C +IE I P + E A V L + ++ D L++V+KLR Sbjct: 177 VCYHCG-REETMEHVFLTCQYTAEIWRELKRVYGMATRHINFVNAGQWLFDFLARSTEQEATILAISFWRIWEARN-----GMRNGDGVVHPHCIAGKILAYGDMVLMHLYESAISNRCDPPHPKRWAPPREGWVMVNVDAAVFAKPDRMGI-GIVIRDHNSCFLVACRQTIEGITVPELAEALAIRRAVLLTSELEYNQALIASDCLSLVQKLR 384 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010994 ID=g.arboreum_cottongen_reftransV1_0010994; Name=g.arboreum_cottongen_reftransV1_0010994; organism=Gossypium arboreum; type=contig; length=1210bpback to top |