g.arboreum_cottongen_reftransV1_0010994, g.arboreum_cottongen_reftransV1_0010994 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010994
Unique Nameg.arboreum_cottongen_reftransV1_0010994
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0010994:1..1210 .
Chr12:145445565..145446880 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2TWL8_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_008G037100 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.240e-12
Identity = 39/127 (30.71%), Postives = 73/127 (57.48%), Query Frame = -3
Query:  498 GVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQ 878
            G  Q +N I + I++F+ E+ ++   L  N R+   +W+ P    V+VN D +F++   ++ SG+++RNN G V+GS      ++ D    E  A L+ + FA ++GF  +++EGD   ++ K +K+
Sbjct:   43 GKNQIVNEIRTKIESFVLEMTVIKEKLPVNQRLMSSKWQHPDRRSVRVNFDAAFRQHLKQSSSGVVIRNNMGLVMGSGVVFHRHVADAFAAEALACLNAITFARDMGFMKVVVEGDSRTIIVKAQKR 169          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2TX68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G352100 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.734e-11
Identity = 41/136 (30.15%), Postives = 77/136 (56.62%), Query Frame = -3
Query:  498 RDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTI--VETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQ 899
            R+   H    Q + + I FI  ++ E + +++ L    R+ + +W+PP  D++K+N D +F K   +   GI+ R+  G ++ +C   + N R PT   VE  A L  V    +LG++ +++EGD L+++KKL+++
Sbjct:    5 RNKILHEKKVQSVEDTIFFICKYLREWEEVNHRLP-GQRVVEERWRPPKPDEIKINFDGAFDKQTFKFGIGIVCRDPEGKIL-NCRSKVNN-RIPTTFAVEALACLQAVRMGLDLGYRRVVVEGDALSIIKKLQRK 137          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: M5XK32_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016563mg PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.179e-11
Identity = 45/206 (21.84%), Postives = 83/206 (40.29%), Query Frame = -3
Query:  501 MCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVR-NHRIQD-LQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRK 1112
            MC  CG+  ES  HVL  C  A   +   ++ + T H                                       H GV++  ++++ F + +++E    ++   +   R++D ++W  PS  ++K N D +F   + R   G++ R+ +G  + +   S+  +      E  A    VA A +LG    I EGD   VV  +++
Sbjct:  654 MCMFCGDITESALHVLAMCPFA---VATWNISLLTRHA--------------------------------------HQGVQRSPHDVVGFAQQYVHEFITANDTPSKVTDRVRDPVRWAAPSSGRLKFNFDGAFDPTSGRGAVGVVARDADGGFVAAVAKSVGEVLSAEHAEILAAREGVALALSLGTASPIFEGDSAVVVSAVKR 818          

HSP 2 Score: 30.8018 bits (68), Expect = 8.179e-11
Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = -1
Query: 1139 IPSKIKINLWRITNNFMPTLSNL 1207
            +P+K+KI  WR+ ++ +PT +NL
Sbjct:  622 VPTKLKIFAWRVAHDILPTKANL 644          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: Q0E0A4_ORYSJ (Os02g0566300 protein OS=Oryza sativa subsp. japonica GN=Os02g0566300 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.046e-10
Identity = 49/222 (22.07%), Postives = 93/222 (41.89%), Query Frame = -3
Query:  492 MCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENT------EWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQ---------WKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMK 1112
            +C  CG  E++  H L  C ++K V   MD  +A +   T      +W  ++ D  K  +   R  L ++  AI   R    H    +     + FIK+++ ++ +++  L     +QD +         W PP ED VK+N+D +  +  N+   G +    +G  + +     E + D   +E       +A A       + +  D L V++ + K+ +
Sbjct:    6 ICKVCGAAEDTWDHALLHCTMSKCVWALMDNDLAELIATTNIKDPKDWLFYMLDVLKPGD---RTKLLVSCWAIWRARRRVLHDEFYESPLTRMHFIKSYLADMDLINIPLC----LQDKKHLTYPKVPVWMPPPEDCVKINVDAAISRWGNKGAVGAVCHTVSGEFVAASAMVWEGLSDSATLEALGCNEGLAIAMGCNMSEVCIASDCLEVIRSISKKPR 220          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: I1P1F5_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.846e-10
Identity = 49/222 (22.07%), Postives = 92/222 (41.44%), Query Frame = -3
Query:  492 MCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENT------EWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQ---------WKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMK 1112
            +C  CG  E++  H L  C ++K V   MD  +A +   T      +W  ++ D  K  +   R  L ++  AI   R    H    +     + FIK+++ ++ ++   L     +QD +         W PP ED VK+N+D +  +  N+   G +    +G  + +     E + D   +E       +A A       + +  D L V++ + K+ +
Sbjct:    6 ICKVCGAAEDTWDHALLHCTMSKCVWALMDNDLAELIATTNIKDPKDWLFYMLDVLKPGD---RTKLLVSCWAIWRARRRVLHDEFYESPLTRMHFIKSYLADMDLIIIPLC----LQDKKHLTYPKVPVWMPPPEDYVKINVDAAISRWGNKGAVGAVCHTVSGEFVAASAMVWEGLSDSATLEALGCNEGLAIAMGCNMSEVCIASDCLEVIRSISKKPR 220          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2VHE5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_013G190000 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.769e-10
Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = -3
Query:  492 RIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIEN-IRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMK 785
            R++D +WKPP   ++ +N D +F K N+R+  GI+ R+++G ++ +C   + N +  P  VE  A L       N  F+ +++EGD LN++KK++   K
Sbjct:    1 RVEDERWKPPDPIEININFDGAFDKQNSRSGIGIVCRDSSGKIL-NCRVMVNNRVPTPFAVEALACLQAAKAGLNPRFRRVVIEGDALNIIKKVKSNYK 98          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: K4A0B9_SETIT (Uncharacterized protein OS=Setaria italica GN=Si032308m.g PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.455e-10
Identity = 51/204 (25.00%), Postives = 87/204 (42.65%), Query Frame = -3
Query:  507 CSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENTEW---KIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 1109
            C  CG +EE+  H    C  A  V +++  +         +   + WL D   ++  ++   + I    I   R+     G R G   +          I   + +L     I+  +W PP    V VN+D +    +NR   G++ R++NG  + +C   +  I +P + E  A  H V F   L + ++I+  D L+VVKKL
Sbjct:   63 CGLCG-REENVTHAFLTCQYASEVWKELKAKSGLRRRLKNFCSPRQWLFDYLAASTEEEATTMTITLWHIWETRN-----GARNGEGQLHPHC------IVEKNPSLCWCDPIRPKKWAPPPGVWVMVNVDAAVFAESNRMGIGLVFRDHNGNFLAACRQGLNGITEPEVAEATALRHAVHFVSALPYNHVIVASDCLSVVKKL 254          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: I1IJK4_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI4G10670 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.533e-9
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  498 WKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNG-FVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQ 767
            W+ P ED VK+N+D SF     R  +G  +R++ G F+ GSC Y IENI D    E +A    +  A  LG   +I+  D ++VV+ ++ +
Sbjct:   21 WERPKEDYVKLNVDASFLADEGRGSTGAFIRDHQGVFLAGSC-YGIENISDAPSAEAWALKDGLLLAGELGCSRLIVNSDCMDVVQTMQDR 110          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: C5WNV7_SORBI (Putative uncharacterized protein Sb01g011130 OS=Sorghum bicolor GN=Sb01g011130 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.306e-9
Identity = 53/208 (25.48%), Postives = 93/208 (44.71%), Query Frame = -3
Query:  504 CSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHE---NTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDN--NLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVS-GIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLR 1109
            C  C +  E   H+   C +A+ V + +   ++T  E   N    I + +     +  +++ + +A       R+       R+    +   ++ ++ E++  +   N   N   Q  +W  P  D +K+N D SF  P  RA S G+++R++ G VI S    + ++  P   E  A L  V  A NLG   +ILE D L VVK ++
Sbjct:  183 CPVCNQVGEDGGHLFFKCGMARQVWELLG--LSTEREVLANFYTPIDVVEFILRASESRKLMMIVALWYTWSERNAIREEDRRRSPQTLARCVELYVQEMRTTETTANPTANQEQQQYKWSKPPVDILKLNCDGSF-SPETRAGSWGVLIRDHEGDVIMSGRGRVNHLMTPMQAELIACLQGVQLAANLGIGRLILETDALEVVKAIK 387          

HSP 2 Score: 22.3274 bits (46), Expect = 2.306e-9
Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = -1
Query: 1139 PSKIKINLWRITNNFMPTLSNL 1204
            P+KIK  LWR  +N  P   NL
Sbjct:  151 PNKIKHFLWRFLHNSHPLRDNL 172          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0A8XVJ3_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.597e-9
Identity = 63/215 (29.30%), Postives = 101/215 (46.98%), Query Frame = -3
Query:  504 MCSTCGEKEESTAHVLCDC-YVAKLVLQ-KMDVQIATMHEN-TEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQG-----INNIISFIKAFINEIKM-LDNNLVRNH--RIQDLQWKPPSEDQVKVNIDTS-FQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLR 1112
            +C  CG +EE+  HV   C Y A++  + K    +AT H N      WL D    +  ++   LAI+F  I   R+     G+R G      + I   I A+ + + M L  + + N        +W PP E  V VN+D + F KP+   + GI++R++N   + +C  +IE I  P + E  A    V     L +   ++  D L++V+KLR
Sbjct:  177 VCYHCG-REETMEHVFLTCQYTAEIWRELKRVYGMATRHINFVNAGQWLFDFLARSTEQEATILAISFWRIWEARN-----GMRNGDGVVHPHCIAGKILAYGDMVLMHLYESAISNRCDPPHPKRWAPPREGWVMVNVDAAVFAKPDRMGI-GIVIRDHNSCFLVACRQTIEGITVPELAEALAIRRAVLLTSELEYNQALIASDCLSLVQKLR 384          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TWL8_GOSRA2.240e-1230.71Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0D2TX68_GOSRA1.734e-1130.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
M5XK32_PRUPE8.179e-1121.84Uncharacterized protein (Fragment) OS=Prunus persi... [more]
Q0E0A4_ORYSJ3.046e-1022.07Os02g0566300 protein OS=Oryza sativa subsp. japoni... [more]
I1P1F5_ORYGL4.846e-1022.07Uncharacterized protein OS=Oryza glaberrima PE=4 S... [more]
A0A0D2VHE5_GOSRA5.769e-1033.33Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
K4A0B9_SETIT8.455e-1025.00Uncharacterized protein OS=Setaria italica GN=Si03... [more]
I1IJK4_BRADI1.533e-936.26Uncharacterized protein OS=Brachypodium distachyon... [more]
C5WNV7_SORBI2.306e-925.48Putative uncharacterized protein Sb01g011130 OS=So... [more]
A0A0A8XVJ3_ARUDO2.597e-929.30Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13456RVT_3coord: 54..134
e-value: 1.1E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 4..132

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010994 ID=g.arboreum_cottongen_reftransV1_0010994; Name=g.arboreum_cottongen_reftransV1_0010994; organism=Gossypium arboreum; type=contig; length=1210bp
CTGAAGCTCCTCAATTCAAATCCTAATAAATAAAAGCAACAAGAAAAATC
CTAAAATCAAAAAAACCTTTCCCCTTCCCTTCTCATTTTTAACTACATCT
GTTGAAGAGTTTCTTTTGCTTGAGAACTTGGAACCCACAAGATTTTGTGC
TAAAACAATTTTCTTCCCACAGTTCCTTCTATTAACTGAGCTCATCGGAG
GCCTTGTTCTTTCTTCTTCGGACTCAGACCCTTAAAACTGTCGTCGACTC
TGTATCCTCCTTTTTCCTTTCTTTGTTCCTTTGTCTCTCTCTTTTTTTTT
TTTAGTTTTGCGATTTTGGTGACTGTAGTTCTCATAAATAAGAAACCAGT
GTTCTTTTTTGTGTTTTTGTGCCCTAATTCCATACCCCTTTGATCCTTCT
GAATGAATGGATCGTCCTCCCTCGGAGTTTTTTTCCACCCAAAAGGTCGG
CAAATCCCTTCCTTTTCCCCACATTACGATCACATGTGCTGCTTCATTTG
CTTCCTGAGCTTTTTTACGACATTCAGTGGATCTCCTTCTAAAATGATGT
ATTGAAACCCTAGGTTTTCTGCGAAGGCTACTTCGTGAAGGCGTGCATAG
GTTTCTACTATTGTTGGATCTCGTATGTTCTCAATCGAGTAGGTGCATGA
ACCGATTACAAAACCGTTGTTATTTCTTACTATAATTCCAGAAACTGCCC
TATTATTTGGCTTTTGAAAACTGGTGTCGATATTAACTTTAACTTGGTCT
TCTGATGGGGGTTTCCATTGTAGATCTTGTATTCTGTGGTTTCTTACAAG
ATTATTGTCCAACATTTTAATTTCGTTTATAAAGGCTTTGATGAAACTTA
TGATGTTGTTAATACCTTGTCGAACACCTGCATGATAAAACAAGTCTCTA
TTGTGTCAAATCGCCTAGAATGCGATTGCTAAACATATTCTCTGTTTTGT
ATTATTTGACTTAAAAGTATCGGTTAACCAAATTTTCCACTCTGTGTTTT
CATGCATGGTTGCAATTTGAACATCCATCTTTTGGAGAACAAGCTTTGCA
ACGTAACAATCGCATAAGACATGTGCAGTTGATTCTTCTTTTTCACCACA
TGTCGAGCACATCGCTTCAAATATGAGTTTTTGAATTTAAGATTACTTAG
AGTAGGCATGAAATTGTTTGTAATCCGCCATAGGTTGATTTTAATTTTGC
TGGGAATTTT
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