g.arboreum_cottongen_reftransV1_0010954, g.arboreum_cottongen_reftransV1_0010954 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: W9R6N8_9ROSA (Putative histone-arginine methyltransferase 1.4 OS=Morus notabilis GN=L484_023525 PE=4 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 7.011e-47 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQ+RCVLSQPIYVM GQEITG+L MVAH+AQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 414 APGAPTTHWYQLRCVLSQPIYVMAGQEITGRLRMVAHDAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALA 501
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: V7C830_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G105500g PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 7.043e-47 Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APG+PTTHWYQ+RCVLSQPIYVM GQEITG+LH++AHNAQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 404 APGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAFA 491
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A9PEX6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 8.680e-47 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: U5FXL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s01850g PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 9.806e-47 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: M4DVX3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra020667 PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.361e-46 Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQIRCVLSQPI+VM GQE+TG+LH+VAH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 414 APGAPTTHWYQIRCVLSQPIHVMAGQELTGRLHLVAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPVA 501
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: ANM14_ARATH (Probable histone-arginine methyltransferase 1.4 OS=Arabidopsis thaliana GN=PRMT14 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 5.209e-49 Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTT 262 APGAPTTHWYQIRCVLSQPI+VM GQEITG+LH++AH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y T Sbjct: 411 APGAPTTHWYQIRCVLSQPIHVMAGQEITGRLHLIAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPT 497
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: ANM13_ARATH (Probable histone-arginine methyltransferase 1.3 OS=Arabidopsis thaliana GN=PRMT13 PE=2 SV=3) HSP 1 Score: 168.318 bits (425), Expect = 3.261e-48 Identity = 75/88 (85.23%), Postives = 82/88 (93.18%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQIRCVLSQPIYVM GQEITG+LH++AH+AQSYTI+LTLSAKMWGPGA QGGI+QSS+CK DLKEPYYRMSQPQ Y A Sbjct: 408 APGAPTTHWYQIRCVLSQPIYVMAGQEITGRLHLIAHSAQSYTIDLTLSAKMWGPGASQGGILQSSTCKFDLKEPYYRMSQPQAYPVA 495
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_ORYSJ (Probable histone-arginine methyltransferase CARM1 OS=Oryza sativa subsp. japonica GN=CARM1 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 3.712e-44 Identity = 68/86 (79.07%), Postives = 81/86 (94.19%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYT 259 APG+PTTHWYQ+RC+LSQP+YVM GQEITG+LH+VAH+AQSYTI LT+SAKMWG GAEQGGI+Q+S+ KL+LKEPYYR+SQPQPY Sbjct: 416 APGSPTTHWYQLRCILSQPLYVMAGQEITGRLHLVAHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEPYYRLSQPQPYV 501
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_ORYSI (Probable histone-arginine methyltransferase CARM1 OS=Oryza sativa subsp. indica GN=CARM1 PE=3 SV=2) HSP 1 Score: 157.147 bits (396), Expect = 3.712e-44 Identity = 68/86 (79.07%), Postives = 81/86 (94.19%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYT 259 APG+PTTHWYQ+RC+LSQP+YVM GQEITG+LH+VAH+AQSYTI LT+SAKMWG GAEQGGI+Q+S+ KL+LKEPYYR+SQPQPY Sbjct: 416 APGSPTTHWYQLRCILSQPLYVMAGQEITGRLHLVAHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEPYYRLSQPQPYV 501
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROYA (Histone-arginine methyltransferase CARMER OS=Drosophila yakuba GN=Art4 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-13 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235 +P AP THWYQ+RC+L PI++ GQ +TG++ + A+ QSY + + L + G + SSS LDLK PY+R Sbjct: 402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROER (Histone-arginine methyltransferase CARMER OS=Drosophila erecta GN=Art4 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.345e-13 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235 +P AP THWYQ+RC+L PI++ GQ +TG++ + A+ QSY + + L + G + SSS LDLK PY+R Sbjct: 402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROPS (Histone-arginine methyltransferase CARMER OS=Drosophila pseudoobscura pseudoobscura GN=Art4 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.418e-13 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235 +P AP THWYQ+RC+L PI++ GQ +TG++ + A+ QSY + + L + G + SSS LDLK PY+R Sbjct: 402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROPE (Histone-arginine methyltransferase CARMER OS=Drosophila persimilis GN=Art4 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.418e-13 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235 +P AP THWYQ+RC+L PI++ GQ +TG++ + A+ QSY + + L + G + SSS LDLK PY+R Sbjct: 402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROGR (Histone-arginine methyltransferase CARMER OS=Drosophila grimshawi GN=Art4 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.488e-13 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235 +P AP THWYQ+RC+L PI++ GQ +TG++ + A+ QSY + + L + G + SSS LDLK PY+R Sbjct: 411 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 479
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROSE (Histone-arginine methyltransferase CARMER OS=Drosophila sechellia GN=Art4 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.505e-13 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235 +P AP THWYQ+RC+L PI++ GQ +TG++ + A+ QSY + + L + G + SSS LDLK PY+R Sbjct: 402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 24
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010954 ID=g.arboreum_cottongen_reftransV1_0010954; Name=g.arboreum_cottongen_reftransV1_0010954; organism=Gossypium arboreum; type=contig; length=453bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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