g.arboreum_cottongen_reftransV1_0010954, g.arboreum_cottongen_reftransV1_0010954 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010954
Unique Nameg.arboreum_cottongen_reftransV1_0010954
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length453
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0010954:1..453 .
Chr11:33581424..33582038 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: W9R6N8_9ROSA (Putative histone-arginine methyltransferase 1.4 OS=Morus notabilis GN=L484_023525 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.011e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQPIYVM GQEITG+L MVAH+AQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  414 APGAPTTHWYQLRCVLSQPIYVMAGQEITGRLRMVAHDAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALA 501          
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: V7C830_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G105500g PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.043e-47
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APG+PTTHWYQ+RCVLSQPIYVM GQEITG+LH++AHNAQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  404 APGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAFA 491          
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A9PEX6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.680e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504          
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: U5FXL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s01850g PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.806e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504          
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: M4DVX3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra020667 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.361e-46
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQIRCVLSQPI+VM GQE+TG+LH+VAH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  414 APGAPTTHWYQIRCVLSQPIHVMAGQELTGRLHLVAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPVA 501          
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DANRE (Histone-arginine methyltransferase CARM1 OS=Danio rerio GN=carm1 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.925e-10
Identity = 29/84 (34.52%), Postives = 43/84 (51.19%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253
            AP  P THWYQ+RC+L  P++   G  ++G   ++A+  QSY I++       G           SS  LDLK P++R +   P
Sbjct:  381 APTEPLTHWYQVRCLLQSPLFAKAGDTMSGTALLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 455          
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_MOUSE (Histone-arginine methyltransferase CARM1 OS=Mus musculus GN=Carm1 PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 5.977e-10
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253
            AP  P THWYQ+RC+   P++   G  ++G   ++A+  QSY I++       G           SS  LDLK P++R +   P
Sbjct:  408 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 482          
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_HUMAN (Histone-arginine methyltransferase CARM1 OS=Homo sapiens GN=CARM1 PE=1 SV=3)

HSP 1 Score: 60.8474 bits (146), Expect = 6.031e-10
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253
            AP  P THWYQ+RC+   P++   G  ++G   ++A+  QSY I++       G           SS  LDLK P++R +   P
Sbjct:  407 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 481          
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_RAT (Histone-arginine methyltransferase CARM1 OS=Rattus norvegicus GN=Carm1 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 7.327e-10
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253
            AP  P THWYQ+RC+   P++   G  ++G   ++A+  QSY I++       G           SS  LDLK P++R +   P
Sbjct:  408 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 482          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9R6N8_9ROSA7.011e-4787.50Putative histone-arginine methyltransferase 1.4 OS... [more]
V7C830_PHAVU7.043e-4786.36Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A9PEX6_POPTR8.680e-4787.50Putative uncharacterized protein OS=Populus tricho... [more]
U5FXL6_POPTR9.806e-4787.50Uncharacterized protein OS=Populus trichocarpa GN=... [more]
M4DVX3_BRARP1.361e-4686.36Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CARM1_DANRE2.925e-1034.52Histone-arginine methyltransferase CARM1 OS=Danio ... [more]
CARM1_MOUSE5.977e-1033.33Histone-arginine methyltransferase CARM1 OS=Mus mu... [more]
CARM1_HUMAN6.031e-1033.33Histone-arginine methyltransferase CARM1 OS=Homo s... [more]
CARM1_RAT7.327e-1033.33Histone-arginine methyltransferase CARM1 OS=Rattus... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.70.160.11coord: 2..38
e-value: 7.5E-4
score: 18.9
NoneNo IPR availablePANTHERPTHR11006:SF10HISTONE-ARGININE METHYLTRANSFERASE CARMER-RELATEDcoord: 1..81
IPR025799Protein arginine N-methyltransferasePANTHERPTHR11006PROTEIN ARGININE N-METHYLTRANSFERASEcoord: 1..81

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010954 ID=g.arboreum_cottongen_reftransV1_0010954; Name=g.arboreum_cottongen_reftransV1_0010954; organism=Gossypium arboreum; type=contig; length=453bp
CGCCCCTGGTGCTCCTACAACCCACTGGTACCAGATACGATGTGTTCTTT
CTCAGCCAATTTATGTAATGACTGGGCAAGAAATTACCGGCCAACTTCAC
ATGGTTGCCCATAACGCTCAAAGTTATACCATAAATCTAACATTGTCAGC
TAAAATGTGGGGTCCCGGGGCCGAACAAGGAGGAATTATTCAGTCCTCAT
CATGCAAACTCGATCTCAAGGAACCTTATTACAGAATGTCACAGCCTCAA
CCCTACACAACGGCACAAGACCAACAACCGCTTCAGCTACTGCAGCCTCA
GGACATACCAATCCACACTGATGACTTAGAGGAACCCAAGTTGCTGCAGC
AGCCATTAGAAAATTCGGGAGCTCTGCTCCAGTAAGTGATTTGAATTTCA
GAGACAAAACAATGATTCTAACATAAAATTTTGCTTTCGATCCTTGTAAA
GTA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR025799Arg_MeTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006479protein methylation