g.arboreum_cottongen_reftransV1_0010954, g.arboreum_cottongen_reftransV1_0010954 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: W9R6N8_9ROSA (Putative histone-arginine methyltransferase 1.4 OS=Morus notabilis GN=L484_023525 PE=4 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 7.011e-47 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQ+RCVLSQPIYVM GQEITG+L MVAH+AQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 414 APGAPTTHWYQLRCVLSQPIYVMAGQEITGRLRMVAHDAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALA 501
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: V7C830_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G105500g PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 7.043e-47 Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APG+PTTHWYQ+RCVLSQPIYVM GQEITG+LH++AHNAQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 404 APGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAFA 491
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A9PEX6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 8.680e-47 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: U5FXL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s01850g PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 9.806e-47 Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: M4DVX3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra020667 PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.361e-46 Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQIRCVLSQPI+VM GQE+TG+LH+VAH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 414 APGAPTTHWYQIRCVLSQPIHVMAGQELTGRLHLVAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPVA 501
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DANRE (Histone-arginine methyltransferase CARM1 OS=Danio rerio GN=carm1 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.925e-10 Identity = 29/84 (34.52%), Postives = 43/84 (51.19%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253 AP P THWYQ+RC+L P++ G ++G ++A+ QSY I++ G SS LDLK P++R + P Sbjct: 381 APTEPLTHWYQVRCLLQSPLFAKAGDTMSGTALLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 455
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_MOUSE (Histone-arginine methyltransferase CARM1 OS=Mus musculus GN=Carm1 PE=1 SV=2) HSP 1 Score: 60.8474 bits (146), Expect = 5.977e-10 Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253 AP P THWYQ+RC+ P++ G ++G ++A+ QSY I++ G SS LDLK P++R + P Sbjct: 408 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 482
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_HUMAN (Histone-arginine methyltransferase CARM1 OS=Homo sapiens GN=CARM1 PE=1 SV=3) HSP 1 Score: 60.8474 bits (146), Expect = 6.031e-10 Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253 AP P THWYQ+RC+ P++ G ++G ++A+ QSY I++ G SS LDLK P++R + P Sbjct: 407 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 481
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_RAT (Histone-arginine methyltransferase CARM1 OS=Rattus norvegicus GN=Carm1 PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 7.327e-10 Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253 AP P THWYQ+RC+ P++ G ++G ++A+ QSY I++ G SS LDLK P++R + P Sbjct: 408 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 482 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 24
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010954 ID=g.arboreum_cottongen_reftransV1_0010954; Name=g.arboreum_cottongen_reftransV1_0010954; organism=Gossypium arboreum; type=contig; length=453bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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