g.arboreum_cottongen_reftransV1_0010954, g.arboreum_cottongen_reftransV1_0010954 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010954
Unique Nameg.arboreum_cottongen_reftransV1_0010954
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length453
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0010954:1..453 .
Chr11:33581424..33582038 +		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: W9R6N8_9ROSA (Putative histone-arginine methyltransferase 1.4 OS=Morus notabilis GN=L484_023525 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.011e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQPIYVM GQEITG+L MVAH+AQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  414 APGAPTTHWYQLRCVLSQPIYVMAGQEITGRLRMVAHDAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALA 501
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: V7C830_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G105500g PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.043e-47
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APG+PTTHWYQ+RCVLSQPIYVM GQEITG+LH++AHNAQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  404 APGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAFA 491
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A9PEX6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.680e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: U5FXL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s01850g PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.806e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: M4DVX3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra020667 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.361e-46
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQIRCVLSQPI+VM GQE+TG+LH+VAH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  414 APGAPTTHWYQIRCVLSQPIHVMAGQELTGRLHLVAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPVA 501
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROAN (Histone-arginine methyltransferase CARMER OS=Drosophila ananassae GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.534e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROWI (Histone-arginine methyltransferase CARMER OS=Drosophila willistoni GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.594e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  404 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 472
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROSI (Histone-arginine methyltransferase CARMER OS=Drosophila simulans GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.601e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROME (Probable histone-arginine methyltransferase CARMER OS=Drosophila melanogaster GN=Art4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.626e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROMO (Histone-arginine methyltransferase CARMER OS=Drosophila mojavensis GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.808e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  410 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 478
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROVI (Histone-arginine methyltransferase CARMER OS=Drosophila virilis GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.964e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  409 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 477
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_ANOGA (Histone-arginine methyltransferase CARMER OS=Anopheles gambiae GN=CARM1 PE=1 SV=5)

HSP 1 Score: 68.9366 bits (167), Expect = 1.267e-12
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P  P THWYQ+RC+L  PI+V  GQ ++G++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  379 SPTEPLTHWYQVRCLLQTPIFVKQGQVLSGKVVLAANQRQSYDVEIDLKLE---------GTMISSSNTLDLKNPYFR 447
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_AEDAE (Histone-arginine methyltransferase CARMER OS=Aedes aegypti GN=CARM1 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.686e-11
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            AP    THWYQ+RC+L  PI+V  GQ ++G++ + A+  QSY + + L  +         G + +S+  LDLK PY+R
Sbjct:  383 APTESLTHWYQVRCLLQTPIFVKQGQVLSGKVVLAANQRQSYDVEMDLKLE---------GTMITSTNTLDLKNPYFR 451
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_XENLA (Histone-arginine methyltransferase CARM1 OS=Xenopus laevis GN=carm1 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.549e-11
Identity = 30/84 (35.71%), Postives = 44/84 (52.38%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253
            AP  P THWYQ+RC+L  PI+   G  ++G + ++A+  QSY I++       G           SS  LDLK P++R +   P
Sbjct:  378 APTEPLTHWYQVRCLLQSPIFTKAGDTLSGTVLLIANKKQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGSAP 452
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_CULQU (Histone-arginine methyltransferase CARMER OS=Culex quinquefasciatus GN=Art4 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.497e-11
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            AP    THWYQ+RC+L  PI+V  GQ ++G++ + A+  QSY + + L  +         G + +S   LDLK PY+R
Sbjct:  388 APTESLTHWYQVRCLLQTPIFVKQGQVLSGKVVLAANQRQSYDVEIDLKLE---------GTMITSCNTLDLKNPYFR 456
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9R6N8_9ROSA7.011e-4787.50Putative histone-arginine methyltransferase 1.4 OS... [more]
V7C830_PHAVU7.043e-4786.36Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A9PEX6_POPTR8.680e-4787.50Putative uncharacterized protein OS=Populus tricho... [more]
U5FXL6_POPTR9.806e-4787.50Uncharacterized protein OS=Populus trichocarpa GN=... [more]
M4DVX3_BRARP1.361e-4686.36Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CARM1_DROAN2.534e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROWI2.594e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROSI2.601e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROME2.626e-1342.31Probable histone-arginine methyltransferase CARMER... [more]
CARM1_DROMO2.808e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROVI2.964e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_ANOGA1.267e-1241.03Histone-arginine methyltransferase CARMER OS=Anoph... [more]
CARM1_AEDAE2.686e-1138.46Histone-arginine methyltransferase CARMER OS=Aedes... [more]
CARM1_XENLA3.549e-1135.71Histone-arginine methyltransferase CARM1 OS=Xenopu... [more]
CARM1_CULQU5.497e-1138.46Histone-arginine methyltransferase CARMER OS=Culex... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.70.160.11coord: 2..38
e-value: 7.5E-4
score: 18.9
NoneNo IPR availablePANTHERPTHR11006:SF10HISTONE-ARGININE METHYLTRANSFERASE CARMER-RELATEDcoord: 1..81
IPR025799Protein arginine N-methyltransferasePANTHERPTHR11006PROTEIN ARGININE N-METHYLTRANSFERASEcoord: 1..81

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010954 ID=g.arboreum_cottongen_reftransV1_0010954; Name=g.arboreum_cottongen_reftransV1_0010954; organism=Gossypium arboreum; type=contig; length=453bp
CGCCCCTGGTGCTCCTACAACCCACTGGTACCAGATACGATGTGTTCTTT
CTCAGCCAATTTATGTAATGACTGGGCAAGAAATTACCGGCCAACTTCAC
ATGGTTGCCCATAACGCTCAAAGTTATACCATAAATCTAACATTGTCAGC
TAAAATGTGGGGTCCCGGGGCCGAACAAGGAGGAATTATTCAGTCCTCAT
CATGCAAACTCGATCTCAAGGAACCTTATTACAGAATGTCACAGCCTCAA
CCCTACACAACGGCACAAGACCAACAACCGCTTCAGCTACTGCAGCCTCA
GGACATACCAATCCACACTGATGACTTAGAGGAACCCAAGTTGCTGCAGC
AGCCATTAGAAAATTCGGGAGCTCTGCTCCAGTAAGTGATTTGAATTTCA
GAGACAAAACAATGATTCTAACATAAAATTTTGCTTTCGATCCTTGTAAA
GTA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR025799Arg_MeTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006479protein methylation