g.arboreum_cottongen_reftransV1_0010954, g.arboreum_cottongen_reftransV1_0010954 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010954
Unique Nameg.arboreum_cottongen_reftransV1_0010954
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length453
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0010954:1..453 .
Chr11:33581424..33582038 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: W9R6N8_9ROSA (Putative histone-arginine methyltransferase 1.4 OS=Morus notabilis GN=L484_023525 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.011e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQPIYVM GQEITG+L MVAH+AQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  414 APGAPTTHWYQLRCVLSQPIYVMAGQEITGRLRMVAHDAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALA 501
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: V7C830_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G105500g PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.043e-47
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APG+PTTHWYQ+RCVLSQPIYVM GQEITG+LH++AHNAQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  404 APGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAFA 491
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A9PEX6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.680e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: U5FXL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s01850g PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.806e-47
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQ+RCVLSQP+YVM GQEITGQL MVAHNAQSYT+ LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  417 APGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYAMA 504
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: M4DVX3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra020667 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.361e-46
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQIRCVLSQPI+VM GQE+TG+LH+VAH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y  A
Sbjct:  414 APGAPTTHWYQIRCVLSQPIHVMAGQELTGRLHLVAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPVA 501
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: ANM14_ARATH (Probable histone-arginine methyltransferase 1.4 OS=Arabidopsis thaliana GN=PRMT14 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.209e-49
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTT 262
            APGAPTTHWYQIRCVLSQPI+VM GQEITG+LH++AH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y T
Sbjct:  411 APGAPTTHWYQIRCVLSQPIHVMAGQEITGRLHLIAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPT 497
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: ANM13_ARATH (Probable histone-arginine methyltransferase 1.3 OS=Arabidopsis thaliana GN=PRMT13 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.261e-48
Identity = 75/88 (85.23%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265
            APGAPTTHWYQIRCVLSQPIYVM GQEITG+LH++AH+AQSYTI+LTLSAKMWGPGA QGGI+QSS+CK DLKEPYYRMSQPQ Y  A
Sbjct:  408 APGAPTTHWYQIRCVLSQPIYVMAGQEITGRLHLIAHSAQSYTIDLTLSAKMWGPGASQGGILQSSTCKFDLKEPYYRMSQPQAYPVA 495
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_ORYSJ (Probable histone-arginine methyltransferase CARM1 OS=Oryza sativa subsp. japonica GN=CARM1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.712e-44
Identity = 68/86 (79.07%), Postives = 81/86 (94.19%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYT 259
            APG+PTTHWYQ+RC+LSQP+YVM GQEITG+LH+VAH+AQSYTI LT+SAKMWG GAEQGGI+Q+S+ KL+LKEPYYR+SQPQPY 
Sbjct:  416 APGSPTTHWYQLRCILSQPLYVMAGQEITGRLHLVAHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEPYYRLSQPQPYV 501
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_ORYSI (Probable histone-arginine methyltransferase CARM1 OS=Oryza sativa subsp. indica GN=CARM1 PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 3.712e-44
Identity = 68/86 (79.07%), Postives = 81/86 (94.19%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYT 259
            APG+PTTHWYQ+RC+LSQP+YVM GQEITG+LH+VAH+AQSYTI LT+SAKMWG GAEQGGI+Q+S+ KL+LKEPYYR+SQPQPY 
Sbjct:  416 APGSPTTHWYQLRCILSQPLYVMAGQEITGRLHLVAHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEPYYRLSQPQPYV 501
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROYA (Histone-arginine methyltransferase CARMER OS=Drosophila yakuba GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROER (Histone-arginine methyltransferase CARMER OS=Drosophila erecta GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.345e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROPS (Histone-arginine methyltransferase CARMER OS=Drosophila pseudoobscura pseudoobscura GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.418e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROPE (Histone-arginine methyltransferase CARMER OS=Drosophila persimilis GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.418e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROGR (Histone-arginine methyltransferase CARMER OS=Drosophila grimshawi GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.488e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  411 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 479
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DROSE (Histone-arginine methyltransferase CARMER OS=Drosophila sechellia GN=Art4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.505e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:    2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYR 235
            +P AP THWYQ+RC+L  PI++  GQ +TG++ + A+  QSY + + L  +         G + SSS  LDLK PY+R
Sbjct:  402 SPTAPLTHWYQVRCLLPMPIFIKQGQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9R6N8_9ROSA7.011e-4787.50Putative histone-arginine methyltransferase 1.4 OS... [more]
V7C830_PHAVU7.043e-4786.36Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A9PEX6_POPTR8.680e-4787.50Putative uncharacterized protein OS=Populus tricho... [more]
U5FXL6_POPTR9.806e-4787.50Uncharacterized protein OS=Populus trichocarpa GN=... [more]
M4DVX3_BRARP1.361e-4686.36Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ANM14_ARATH5.209e-4987.36Probable histone-arginine methyltransferase 1.4 OS... [more]
ANM13_ARATH3.261e-4885.23Probable histone-arginine methyltransferase 1.3 OS... [more]
CARM1_ORYSJ3.712e-4479.07Probable histone-arginine methyltransferase CARM1 ... [more]
CARM1_ORYSI3.712e-4479.07Probable histone-arginine methyltransferase CARM1 ... [more]
CARM1_DROYA2.323e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROER2.345e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROPS2.418e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROPE2.418e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROGR2.488e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROSE2.505e-1342.31Histone-arginine methyltransferase CARMER OS=Droso... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.70.160.11coord: 2..38
e-value: 7.5E-4
score: 18.9
NoneNo IPR availablePANTHERPTHR11006:SF10HISTONE-ARGININE METHYLTRANSFERASE CARMER-RELATEDcoord: 1..81
IPR025799Protein arginine N-methyltransferasePANTHERPTHR11006PROTEIN ARGININE N-METHYLTRANSFERASEcoord: 1..81

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010954 ID=g.arboreum_cottongen_reftransV1_0010954; Name=g.arboreum_cottongen_reftransV1_0010954; organism=Gossypium arboreum; type=contig; length=453bp
CGCCCCTGGTGCTCCTACAACCCACTGGTACCAGATACGATGTGTTCTTT
CTCAGCCAATTTATGTAATGACTGGGCAAGAAATTACCGGCCAACTTCAC
ATGGTTGCCCATAACGCTCAAAGTTATACCATAAATCTAACATTGTCAGC
TAAAATGTGGGGTCCCGGGGCCGAACAAGGAGGAATTATTCAGTCCTCAT
CATGCAAACTCGATCTCAAGGAACCTTATTACAGAATGTCACAGCCTCAA
CCCTACACAACGGCACAAGACCAACAACCGCTTCAGCTACTGCAGCCTCA
GGACATACCAATCCACACTGATGACTTAGAGGAACCCAAGTTGCTGCAGC
AGCCATTAGAAAATTCGGGAGCTCTGCTCCAGTAAGTGATTTGAATTTCA
GAGACAAAACAATGATTCTAACATAAAATTTTGCTTTCGATCCTTGTAAA
GTA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR025799Arg_MeTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006479protein methylation