g.arboreum_cottongen_reftransV1_0010954, g.arboreum_cottongen_reftransV1_0010954 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A0A0B0NH93_GOSAR (Putative histone-arginine methyltransferase 1.3-like protein OS=Gossypium arboreum GN=F383_14232 PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 1.433e-58 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTAXXXXXXXXXXXXXXXXHTDDXXXXXXXXXXXXNSGALLQ 382 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTAQDQQPLQLLQPQDIPIHTDDLEEPKLLQQPLENSGALLQ Sbjct: 396 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTAQDQQPLQLLQPQDIPIHTDDLEEPKLLQQPLENSGALLQ 522
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A0A0D2QH83_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G262700 PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.281e-54 Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTAXXXXXXXXXXXXXXXXHTDDXXXXXXXXXXXXNSGALLQ 382 APGAPTTHWYQIRCVLSQPIYVM GQEITG+LHMVAHNAQSYTI +TLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTAQDQQP QLLQPQDIPIHTDDLEEPKLLQQPLENSGA LQ Sbjct: 410 APGAPTTHWYQIRCVLSQPIYVMAGQEITGRLHMVAHNAQSYTIYVTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTAQDQQPHQLLQPQDIPIHTDDLEEPKLLQQPLENSGAQLQ 536
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A0A061ENT5_THECC (Arginine methyltransferase 4A isoform 1 OS=Theobroma cacao GN=TCM_021208 PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.573e-51 Identity = 113/127 (88.98%), Postives = 119/127 (93.70%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTAXXXXXXXXXXXXXXXXHTDDXXXXXXXXXXXXNSGALLQ 382 APGAPTTHWYQIRCVLSQPIYVM GQEITG+LHM+AHNAQSYTI LTLSAKMWGPGAEQGGI+Q+SSCKLDLKEPYYRMSQPQPYT AQDQQP QLLQ QDIPIH +DLEEP+LLQQP ENSGA LQ Sbjct: 413 APGAPTTHWYQIRCVLSQPIYVMAGQEITGRLHMIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQPYTLAQDQQPHQLLQAQDIPIHAEDLEEPELLQQPSENSGAQLQ 539
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A0A0B0PCI6_GOSAR (Putative histone-arginine methyltransferase 1.3-like protein OS=Gossypium arboreum GN=F383_07716 PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.402e-50 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQIRCVLSQPIYVM GQEITGQLHM+AHNAQSYTI LTLSAKMWGPGAEQGGIIQ+SSCKLDLKEPYYRMSQPQPYT A Sbjct: 409 APGAPTTHWYQIRCVLSQPIYVMAGQEITGQLHMIAHNAQSYTIYLTLSAKMWGPGAEQGGIIQTSSCKLDLKEPYYRMSQPQPYTMA 496
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A0A0D2Q567_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G076000 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.537e-50 Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQIRCVLSQPIYVM GQEITG+LHM+AHNAQSYTI L LSAKMWGPGAEQGGIIQ+SSCKLDLKEPYYRMSQPQPYTTA Sbjct: 410 APGAPTTHWYQIRCVLSQPIYVMAGQEITGRLHMIAHNAQSYTIYLALSAKMWGPGAEQGGIIQTSSCKLDLKEPYYRMSQPQPYTTA 497
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A0A0D2NN91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G076000 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.373e-50 Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQIRCVLSQPIYVM GQEITG+LHM+AHNAQSYTI L LSAKMWGPGAEQGGIIQ+SSCKLDLKEPYYRMSQPQPYTTA Sbjct: 410 APGAPTTHWYQIRCVLSQPIYVMAGQEITGRLHMIAHNAQSYTIYLALSAKMWGPGAEQGGIIQTSSCKLDLKEPYYRMSQPQPYTTA 497
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: M5XEC3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003751mg PE=4 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.934e-48 Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYT 259 APGAPTTHWYQ+RCVLSQPIYVM GQEITG+LHM+AHNAQSYTI LTL+AKMWGPGAEQGGIIQ SSCKLDLKEPYYRMSQPQ YT Sbjct: 410 APGAPTTHWYQLRCVLSQPIYVMAGQEITGRLHMIAHNAQSYTIYLTLAAKMWGPGAEQGGIIQESSCKLDLKEPYYRMSQPQAYT 495
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: M5XYE5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003751mg PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 2.966e-48 Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYT 259 APGAPTTHWYQ+RCVLSQPIYVM GQEITG+LHM+AHNAQSYTI LTL+AKMWGPGAEQGGIIQ SSCKLDLKEPYYRMSQPQ YT Sbjct: 410 APGAPTTHWYQLRCVLSQPIYVMAGQEITGRLHMIAHNAQSYTIYLTLAAKMWGPGAEQGGIIQESSCKLDLKEPYYRMSQPQAYT 495
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: D7MN52_ARALL (Arginine N-methyltransferase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_494964 PE=4 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 9.343e-48 Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTT 262 APGAPTTHWYQIRCVLSQPI+VM GQEITG+LH+VAH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y T Sbjct: 409 APGAPTTHWYQIRCVLSQPIHVMAGQEITGRLHLVAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPT 495
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Match: A0A078DB30_BRANA (BnaA06g29740D protein OS=Brassica napus GN=BnaA06g29740D PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.903e-47 Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQPYTTA 265 APGAPTTHWYQIRCVLSQPI+VM GQEITG+LH+VAH+AQSYTINLTLSAKMWGPGA QGGI+Q+SSCKLDLKEPYYRMSQPQ Y A Sbjct: 405 APGAPTTHWYQIRCVLSQPIHVMAGQEITGRLHLVAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEPYYRMSQPQVYPVA 492
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_DANRE (Histone-arginine methyltransferase CARM1 OS=Danio rerio GN=carm1 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.925e-10 Identity = 29/84 (34.52%), Postives = 43/84 (51.19%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253 AP P THWYQ+RC+L P++ G ++G ++A+ QSY I++ G SS LDLK P++R + P Sbjct: 381 APTEPLTHWYQVRCLLQSPLFAKAGDTMSGTALLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 455
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_MOUSE (Histone-arginine methyltransferase CARM1 OS=Mus musculus GN=Carm1 PE=1 SV=2) HSP 1 Score: 60.8474 bits (146), Expect = 5.977e-10 Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253 AP P THWYQ+RC+ P++ G ++G ++A+ QSY I++ G SS LDLK P++R + P Sbjct: 408 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 482
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_HUMAN (Histone-arginine methyltransferase CARM1 OS=Homo sapiens GN=CARM1 PE=1 SV=3) HSP 1 Score: 60.8474 bits (146), Expect = 6.031e-10 Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253 AP P THWYQ+RC+ P++ G ++G ++A+ QSY I++ G SS LDLK P++R + P Sbjct: 407 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 481
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Match: CARM1_RAT (Histone-arginine methyltransferase CARM1 OS=Rattus norvegicus GN=Carm1 PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 7.327e-10 Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 2 Query: 2 APGAPTTHWYQIRCVLSQPIYVMTGQEITGQLHMVAHNAQSYTINLTLSAKMWGPGAEQGGIIQSSSCKLDLKEPYYRMSQPQP 253 AP P THWYQ+RC+ P++ G ++G ++A+ QSY I++ G SS LDLK P++R + P Sbjct: 408 APTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 482 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0010954 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 24
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010954 ID=g.arboreum_cottongen_reftransV1_0010954; Name=g.arboreum_cottongen_reftransV1_0010954; organism=Gossypium arboreum; type=contig; length=453bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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