g.arboreum_cottongen_reftransV1_0010737, g.arboreum_cottongen_reftransV1_0010737 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010737
Unique Nameg.arboreum_cottongen_reftransV1_0010737
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length562
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0010737:1..562 .
Chr6:49911250..49912115 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: X2C0H4_ARAHY (Cyclops1 (Fragment) OS=Arachis hypogaea GN=IPD3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.514e-33
Identity = 99/194 (51.03%), Postives = 130/194 (67.01%), Query Frame = -3
Query:    9 PSNSSSSTFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSI---------VPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENG-SKSKEFRERIIDNLKDDRKQR 560
            PSNSSSSTF  LQ G+ DKVSS VS+LK TL+R++     EKEA  D S+         V   +F +GQ N  H+ P     +  GQV + GV+Q ++G M+  +++F N  N + +   S+E SQSESSAAAPV+SSGLDAC+GPSNS+QTL   ES+ KQ G + +SEN  +K K FRE+I+DNLKDDRK+R
Sbjct:  218 PSNSSSSTFKTLQFGDADKVSSSVSILKDTLQRRR----AEKEAA-DKSLNGIFCPQEPVFQTSFLEGQENWSHQKPVNVQAMSNGQVDH-GVLQTLEGSMNFVMDSFANQTNQMYIGTASQEPSQSESSAAAPVVSSGLDACEGPSNSNQTLG--ESSWKQVGVSKSSENTQNKVKGFREQIMDNLKDDRKRR 403          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: M1D1J3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030852 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.983e-33
Identity = 85/187 (45.45%), Postives = 116/187 (62.03%), Query Frame = -3
Query:    6 TFNALQTGNVDKVSSVVSMLKGTLERKKLGN-QIEKEAVKDS--------SIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 539
            TF A Q    D +SSVVSMLKGTLERKKL N    +EA++++         +  N + NQ  GNH     G + D  + QV + G+ Q VQG +D  LE+ + P N IQ+  VS+E SQS SS AAP+IS   DA DG SN+SQ  ++ E ++ Q G   +SENGS +++ RERI DN+KD++K+ G
Sbjct:  155 TFEAQQVDGADNISSVVSMLKGTLERKKLTNYHTAREAIEENMLGCYGNQEVFCNSSMNQHPGNHISLNQGTYQDASVVQVRDTGIPQTVQGSLDAVLESIMAPSNPIQIDMVSQEPSQSGSSVAAPIISIDFDAYDGLSNASQAFNVYEGSRNQVGYGRSSENGSTARDIRERIYDNMKDNQKKEG 341          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: M1D1J2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030852 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 9.266e-33
Identity = 85/187 (45.45%), Postives = 116/187 (62.03%), Query Frame = -3
Query:    6 TFNALQTGNVDKVSSVVSMLKGTLERKKLGN-QIEKEAVKDS--------SIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 539
            TF A Q    D +SSVVSMLKGTLERKKL N    +EA++++         +  N + NQ  GNH     G + D  + QV + G+ Q VQG +D  LE+ + P N IQ+  VS+E SQS SS AAP+IS   DA DG SN+SQ  ++ E ++ Q G   +SENGS +++ RERI DN+KD++K+ G
Sbjct:  225 TFEAQQVDGADNISSVVSMLKGTLERKKLTNYHTAREAIEENMLGCYGNQEVFCNSSMNQHPGNHISLNQGTYQDASVVQVRDTGIPQTVQGSLDAVLESIMAPSNPIQIDMVSQEPSQSGSSVAAPIISIDFDAYDGLSNASQAFNVYEGSRNQVGYGRSSENGSTARDIRERIYDNMKDNQKKEG 411          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A7TUE1_MEDTR (CYCLOPS OS=Medicago truncatula GN=IPD3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.938e-29
Identity = 92/189 (48.68%), Postives = 117/189 (61.90%), Query Frame = -3
Query:    9 STFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKD--------SSIVPNGTFNQGQG---NHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQR 542
            STFN  Q  +VDKVSS VSMLKGTL+RKKL  Q+EKEA +D           +    FN+ +         + G F D    QV +PGV+Q ++G  +  L+ F N  N IQ    S E SQSESSAAAPVISSGLDAC+GPSNS+QTL   +S+ KQ G +      +K +  RE+I+DNLKDDRK++
Sbjct:  222 STFNTHQLVDVDKVSSCVSMLKGTLQRKKLECQVEKEAAEDGLNEIFCIREPLFQSAFNEEESWNQQKLVNVQGDFTD----QVNDPGVMQTLEGTTNFVLDGFANQTNQIQGRTASGEPSQSESSAAAPVISSGLDACEGPSNSNQTLG--DSSWKQVGES----TQNKVRGVREQIMDNLKDDRKRK 400          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: G7K6U2_MEDTR (Cyclops protein, putative OS=Medicago truncatula GN=MTR_5g026850 PE=4 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.063e-29
Identity = 92/189 (48.68%), Postives = 117/189 (61.90%), Query Frame = -3
Query:    9 STFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKD--------SSIVPNGTFNQGQG---NHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQR 542
            STFN  Q  +VDKVSS VSMLKGTL+RKKL  Q+EKEA +D           +    FN+ +         + G F D    QV +PGV+Q ++G  +  L+ F N  N IQ    S E SQSESSAAAPVISSGLDAC+GPSNS+QTL   +S+ KQ G +      +K +  RE+I+DNLKDDRK++
Sbjct:  228 STFNTHQLVDVDKVSSCVSMLKGTLQRKKLECQVEKEAAEDGLNEIFCIREPLFQSAFNEEESWNQQKLVNVQGDFTD----QVNDPGVMQTLEGTTNFVLDGFANQTNQIQGRTASGEPSQSESSAAAPVISSGLDACEGPSNSNQTLG--DSSWKQVGES----TQNKVRGVREQIMDNLKDDRKRK 406          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
X2C0H4_ARAHY1.514e-3351.03Cyclops1 (Fragment) OS=Arachis hypogaea GN=IPD3 PE... [more]
M1D1J3_SOLTU6.983e-3345.45Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
M1D1J2_SOLTU9.266e-3345.45Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A7TUE1_MEDTR1.938e-2948.68CYCLOPS OS=Medicago truncatula GN=IPD3 PE=2 SV=1[more]
G7K6U2_MEDTR2.063e-2948.68Cyclops protein, putative OS=Medicago truncatula G... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36890FAMILY NOT NAMEDcoord: 1..160

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010737 ID=g.arboreum_cottongen_reftransV1_0010737; Name=g.arboreum_cottongen_reftransV1_0010737; organism=Gossypium arboreum; type=contig; length=562bp
AGGCCTCCCCTTTGCTTCCGATCATCTTTCAAGTTGTCAATTATCCTTTC
TCTGAATTCTTTAGATTTAGAGCCATTTTCTGAGTTCCAGTTGTTTCCAG
CTTGTTTCTTTGTGCTTTCACATATGCTTAAGGTTTGACTTGAGTTGCTC
GGGCCATCACATGCATCCAAACCAGATGAAATCACCGGTGCAGCAGCCGA
GGATTCGCTTTGAGAAGCTTCTCGAGAAACTGCGCTCAACTGAATTGTGT
TTATGGGATTTACAAAAGCTTCCAAGTCAAGATCCATAGGCCCCTGAACA
GCTTGTACAACCCCGGGATTTGTTACTTGGCCAAGGGGTAAGTCTGCGAA
ACCCCCTGGAATTTCATGAAAATGATTCCCTTGTCCTTGGTTGAAGGTGC
CATTAGGCACAATAGAACTATCTTTGACCGCTTCTTTCTCGATTTGGTTG
CCGAGCTTTTTACGTTCTAGTGTACCCTTTAGCATGCTCACAACGGAAGA
AACTTTATCTACATTTCCAGTTTGGAGTGCATTAAATGTAGATGAGGATG
AATTTGATGGAG
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