g.arboreum_cottongen_reftransV1_0010737, g.arboreum_cottongen_reftransV1_0010737 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: X2C0H4_ARAHY (Cyclops1 (Fragment) OS=Arachis hypogaea GN=IPD3 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.514e-33 Identity = 99/194 (51.03%), Postives = 130/194 (67.01%), Query Frame = -3 Query: 9 PSNSSSSTFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSI---------VPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENG-SKSKEFRERIIDNLKDDRKQR 560 PSNSSSSTF LQ G+ DKVSS VS+LK TL+R++ EKEA D S+ V +F +GQ N H+ P + GQV + GV+Q ++G M+ +++F N N + + S+E SQSESSAAAPV+SSGLDAC+GPSNS+QTL ES+ KQ G + +SEN +K K FRE+I+DNLKDDRK+R Sbjct: 218 PSNSSSSTFKTLQFGDADKVSSSVSILKDTLQRRR----AEKEAA-DKSLNGIFCPQEPVFQTSFLEGQENWSHQKPVNVQAMSNGQVDH-GVLQTLEGSMNFVMDSFANQTNQMYIGTASQEPSQSESSAAAPVVSSGLDACEGPSNSNQTLG--ESSWKQVGVSKSSENTQNKVKGFREQIMDNLKDDRKRR 403
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: M1D1J3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030852 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 6.983e-33 Identity = 85/187 (45.45%), Postives = 116/187 (62.03%), Query Frame = -3 Query: 6 TFNALQTGNVDKVSSVVSMLKGTLERKKLGN-QIEKEAVKDS--------SIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 539 TF A Q D +SSVVSMLKGTLERKKL N +EA++++ + N + NQ GNH G + D + QV + G+ Q VQG +D LE+ + P N IQ+ VS+E SQS SS AAP+IS DA DG SN+SQ ++ E ++ Q G +SENGS +++ RERI DN+KD++K+ G Sbjct: 155 TFEAQQVDGADNISSVVSMLKGTLERKKLTNYHTAREAIEENMLGCYGNQEVFCNSSMNQHPGNHISLNQGTYQDASVVQVRDTGIPQTVQGSLDAVLESIMAPSNPIQIDMVSQEPSQSGSSVAAPIISIDFDAYDGLSNASQAFNVYEGSRNQVGYGRSSENGSTARDIRERIYDNMKDNQKKEG 341
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: M1D1J2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030852 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 9.266e-33 Identity = 85/187 (45.45%), Postives = 116/187 (62.03%), Query Frame = -3 Query: 6 TFNALQTGNVDKVSSVVSMLKGTLERKKLGN-QIEKEAVKDS--------SIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 539 TF A Q D +SSVVSMLKGTLERKKL N +EA++++ + N + NQ GNH G + D + QV + G+ Q VQG +D LE+ + P N IQ+ VS+E SQS SS AAP+IS DA DG SN+SQ ++ E ++ Q G +SENGS +++ RERI DN+KD++K+ G Sbjct: 225 TFEAQQVDGADNISSVVSMLKGTLERKKLTNYHTAREAIEENMLGCYGNQEVFCNSSMNQHPGNHISLNQGTYQDASVVQVRDTGIPQTVQGSLDAVLESIMAPSNPIQIDMVSQEPSQSGSSVAAPIISIDFDAYDGLSNASQAFNVYEGSRNQVGYGRSSENGSTARDIRERIYDNMKDNQKKEG 411
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A7TUE1_MEDTR (CYCLOPS OS=Medicago truncatula GN=IPD3 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.938e-29 Identity = 92/189 (48.68%), Postives = 117/189 (61.90%), Query Frame = -3 Query: 9 STFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKD--------SSIVPNGTFNQGQG---NHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQR 542 STFN Q +VDKVSS VSMLKGTL+RKKL Q+EKEA +D + FN+ + + G F D QV +PGV+Q ++G + L+ F N N IQ S E SQSESSAAAPVISSGLDAC+GPSNS+QTL +S+ KQ G + +K + RE+I+DNLKDDRK++ Sbjct: 222 STFNTHQLVDVDKVSSCVSMLKGTLQRKKLECQVEKEAAEDGLNEIFCIREPLFQSAFNEEESWNQQKLVNVQGDFTD----QVNDPGVMQTLEGTTNFVLDGFANQTNQIQGRTASGEPSQSESSAAAPVISSGLDACEGPSNSNQTLG--DSSWKQVGES----TQNKVRGVREQIMDNLKDDRKRK 400
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: G7K6U2_MEDTR (Cyclops protein, putative OS=Medicago truncatula GN=MTR_5g026850 PE=4 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 2.063e-29 Identity = 92/189 (48.68%), Postives = 117/189 (61.90%), Query Frame = -3 Query: 9 STFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKD--------SSIVPNGTFNQGQG---NHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQR 542 STFN Q +VDKVSS VSMLKGTL+RKKL Q+EKEA +D + FN+ + + G F D QV +PGV+Q ++G + L+ F N N IQ S E SQSESSAAAPVISSGLDAC+GPSNS+QTL +S+ KQ G + +K + RE+I+DNLKDDRK++ Sbjct: 228 STFNTHQLVDVDKVSSCVSMLKGTLQRKKLECQVEKEAAEDGLNEIFCIREPLFQSAFNEEESWNQQKLVNVQGDFTD----QVNDPGVMQTLEGTTNFVLDGFANQTNQIQGRTASGEPSQSESSAAAPVISSGLDACEGPSNSNQTLG--DSSWKQVGES----TQNKVRGVREQIMDNLKDDRKRK 406 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010737 ID=g.arboreum_cottongen_reftransV1_0010737; Name=g.arboreum_cottongen_reftransV1_0010737; organism=Gossypium arboreum; type=contig; length=562bpback to top |