g.arboreum_cottongen_reftransV1_0010737, g.arboreum_cottongen_reftransV1_0010737 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: F6I094_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0033g01210 PE=4 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 4.753e-56 Identity = 119/185 (64.32%), Postives = 138/185 (74.59%), Query Frame = -3 Query: 12 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSI--------VPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIID-NLKDDRKQ 539 TFN Q GNVDKVSSVVSMLKGTLERKKL NQIEKEAV+DSSI V N T QGQGN E G F ++ QV + G Q ++G MDLDLE FV P+N IQ+S VS+E SQSESSAAAPVIS+G DACDGPSNS QTLS+CES++KQ GN SEN S++KE R+RI + NLKD+RK+ Sbjct: 230 TFNTPQMGNVDKVSSVVSMLKGTLERKKLSNQIEKEAVEDSSIGYYGAPEVVVNATLGQGQGNSIPESSGTFQEVSPVQVKDHGDFQIIEGSMDLDLEGFVAPLNPIQMSTVSQEPSQSESSAAAPVISAGFDACDGPSNSGQTLSVCESSRKQVGNGRYSENDSRTKEIRQRIFESNLKDERKK 414
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: M5WED9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024275mg PE=4 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.586e-53 Identity = 115/185 (62.16%), Postives = 138/185 (74.59%), Query Frame = -3 Query: 12 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS---------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQ 539 TFN Q ++DKVSSVVSMLKGTLERKKL NQIEKE V+D S I+ N F+QGQG+ HE+ G F ++ QV + + Q V+G +DL++E FVN N LS S+E SQSESSAAAPV+SSG DACDGPSNSSQTLSICES+ K+AGN +SENGSKSK+FRERII NLKDD+K+ Sbjct: 230 TFNTPQMSDMDKVSSVVSMLKGTLERKKLSNQIEKEGVEDDSSNGLFSAQEIIVNTGFDQGQGDRIHELAGTFQEVSTIQVNDHRITQNVEGSLDLEMEGFVNLRNPNPLSRNSQEPSQSESSAAAPVVSSGFDACDGPSNSSQTLSICESSMKRAGNR-SSENGSKSKDFRERIIGNLKDDQKR 413
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A067DXR1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0089331mg PE=4 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.658e-52 Identity = 104/162 (64.20%), Postives = 124/162 (76.54%), Query Frame = -3 Query: 60 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK 539 TFN QTGN+D VSSVVSMLKGTLERKKL NQIEKE ++ S + F+ G GNH HE+ G +L GQV +PGV+Q +QG DLDLE FVNP NT Q+S SRE SQSESSAAAPV+SSG D CDGPSNSSQT+SICES++++ GN +SENGS++K Sbjct: 257 TFNTPQTGNIDNVSSVVSMLKGTLERKKLSNQIEKETFEEFSNGLYRAQEFSNGHGNHIHEMQGTLQELSAGQVKDPGVLQMIQGSFDLDLEGFVNPTNTNQMSTFSREPSQSESSAAAPVVSSGFDTCDGPSNSSQTVSICESSRRRVGNGKSSENGSRAK 418
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A059CJR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02592 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 3.348e-49 Identity = 104/183 (56.83%), Postives = 130/183 (71.04%), Query Frame = -3 Query: 12 FNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQ 536 NA N+D+VSSVVSMLKGTLERKKL NQIE+E +D S I+ N +F QG G+H HE+ F + GQ ++ V+ MDLD E +N N I + AVS+E SQSESSAAAP++SSG DACDGPSNSSQTLS+CES++K G+ + ENGSK+K+FRERIIDNLKDD+K+ Sbjct: 225 MNAQPIKNLDRVSSVVSMLKGTLERKKLANQIERETFEDCSQGSFQAQDILANTSFQQGHGDHIHELSLMFHEASQGQAEGLALLPNVERSMDLDFEQLINTRNPINVRAVSQEPSQSESSAAAPIVSSGFDACDGPSNSSQTLSVCESSRKNVGDTISPENGSKAKDFRERIIDNLKDDKKR 407
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A059CJ37_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02592 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.405e-47 Identity = 104/185 (56.22%), Postives = 130/185 (70.27%), Query Frame = -3 Query: 12 FNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK--EFRERIIDNLKDDRKQ 536 NA N+D+VSSVVSMLKGTLERKKL NQIE+E +D S I+ N +F QG G+H HE+ F + GQ ++ V+ MDLD E +N N I + AVS+E SQSESSAAAP++SSG DACDGPSNSSQTLS+CES++K G+ + ENGSK+K +FRERIIDNLKDD+K+ Sbjct: 225 MNAQPIKNLDRVSSVVSMLKGTLERKKLANQIERETFEDCSQGSFQAQDILANTSFQQGHGDHIHELSLMFHEASQGQAEGLALLPNVERSMDLDFEQLINTRNPINVRAVSQEPSQSESSAAAPIVSSGFDACDGPSNSSQTLSVCESSRKNVGDTISPENGSKAKGADFRERIIDNLKDDKKR 409
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A0A0L144_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005540 PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.727e-41 Identity = 102/183 (55.74%), Postives = 128/183 (69.95%), Query Frame = -3 Query: 12 FNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQ 536 FN +VDK+SSVV+MLKGTLERKKL NQI+KEA +DSS + N +FN+G N+ H IP F D QV + +++ V+ DL EAFVNP+N IQ VS+E SQSESSAAA ++SSG +ACDGPSNS+QT S ES++KQ + EN S+SK+FRERIIDNLKDDRK+ Sbjct: 318 FNTPNMYDVDKISSVVNMLKGTLERKKLNNQIDKEAPEDSSNAHFCAQETIGNPSFNRGSDNYIHPIPNSFHDFSPVQVKDSRILETVEVSADLGFEAFVNPVNPIQSGRVSQEPSQSESSAAAAIVSSGFEACDGPSNSNQTHSNGESSRKQVAGSRGLENESRSKDFRERIIDNLKDDRKR 500
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A068V357_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_93 OS=Coffea canephora GN=GSCOC_T00042453001 PE=4 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.015e-39 Identity = 94/181 (51.93%), Postives = 121/181 (66.85%), Query Frame = -3 Query: 6 QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 524 Q GNVD +SSVV+MLKGTLERKKLGN +EKEAV DSS + N NQ + N +E+ G F DL Q+T G++Q V+G LE + N IQ+S VSRE SQSESSAAAPV+S+G + CDGPS S Q ++CES++K +SE GS+ K+ RER+ +NLKDD+K+ G Sbjct: 233 QGGNVDNISSVVTMLKGTLERKKLGNSVEKEAVDDSSFGCYGSEEVFGNTVLNQ-ERNQAYEMQGTFHDLSAVQITEAGIMQTVEGSFGFGLEGMIPHTNVIQMSIVSREPSQSESSAAAPVVSTGFEVCDGPSTSGQAPTVCESSRKHVDYARSSEYGSRIKDVRERMYNNLKDDKKKEG 412
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: W9QXI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006355 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 2.442e-37 Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = -3 Query: 60 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS---------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK 539 TFN +DKVSS+VSMLKGTLERKKL NQ EKE ++ +S ++ + F QGQ N HE P F ++ QV + GV+Q + G M+L+L+ FVN N IQLS VS+E SQSESSAAAPV+SSG DACDGPSNSSQ +S+ ES++KQ+ N +SENGS++K Sbjct: 227 TFNTKPIAEMDKVSSLVSMLKGTLERKKLNNQTEKEVLEHNSYNGVFPAQEVMVSANFIQGQRNQIHERPLTFHEVSPMQVKDGGVMQMIDGSMELELDGFVNSTNPIQLSRVSQEPSQSESSAAAPVLSSGFDACDGPSNSSQAISVSESSRKQSRNR-SSENGSRAK 394
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A9XMT3_LOTJA (CYCLOPS OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.459e-36 Identity = 96/194 (49.48%), Postives = 130/194 (67.01%), Query Frame = -3 Query: 9 PSNSSSSTFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKD---------SSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENG-SKSKEFRERIIDNLKDDRKQR 560 PSNS SS FN Q G++DKVSS VSMLKGTL+R++L +Q+EKEA +D + G F+QGQ N ++ P +G+V + GV+Q ++G + ++ F N IN I + S E SQSESS AAPVISSGLD C+GP NS+QTL CES+ KQ G + +SEN ++ K FRE+I+DNLKDD+K++ Sbjct: 215 PSNSCSSNFNTPQFGDMDKVSSCVSMLKGTLQRRRLSSQLEKEAAEDDLNGIFYPQEPLFQTG-FDQGQENWSNQTPVNVQVDSIGEVKDHGVLQTLEGSTNPVVDGFANQINQIYVGTASGEPSQSESSNAAPVISSGLDTCEGPINSNQTL--CESSWKQVGVSKSSENTQNRVKGFREQIMDNLKDDKKRK 405
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: K4CMU3_SOLLC (RMC OS=Solanum lycopersicum GN=Solyc08g075760.2 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 7.493e-34 Identity = 87/187 (46.52%), Postives = 117/187 (62.57%), Query Frame = -3 Query: 6 TFNALQTGNVDKVSSVVSMLKGTLERKKLGN-QIEKEAVKDS--------SIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 539 TF A Q VD +SSVVSMLKGTLERKKL N +EA++++ I N NQ GNH G + D P+ QV + G+ Q VQG +D LE+ + P N IQ+ V++E SQS SS AAP++S DA DG SN+SQ L++ E + Q G +SENGS +++ RERI DN+KD++K+ G Sbjct: 227 TFEAQQVDGVDNISSVVSMLKGTLERKKLTNYHTAREAIEENMLGCYGNQEIFCNSDMNQHPGNHISLNQGTYQDTPVVQVRDTGIPQTVQGSLDAVLESIMAPSNPIQIDMVTQEPSQSGSSVAAPILSIDFDAYDGLSNASQALNMYEGCRNQVGYGRSSENGSTARDIRERIYDNVKDNQKKEG 413 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010737 ID=g.arboreum_cottongen_reftransV1_0010737; Name=g.arboreum_cottongen_reftransV1_0010737; organism=Gossypium arboreum; type=contig; length=562bpback to top |