g.arboreum_cottongen_reftransV1_0010737, g.arboreum_cottongen_reftransV1_0010737 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010737
Unique Nameg.arboreum_cottongen_reftransV1_0010737
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length562
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr6chromosomeg.arboreum_cottongen_reftransV1_0010737:1..562 .
Chr6:49911250..49912115 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: F6I094_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0033g01210 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.753e-56
Identity = 119/185 (64.32%), Postives = 138/185 (74.59%), Query Frame = -3
Query:   12 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSI--------VPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIID-NLKDDRKQ 539
            TFN  Q GNVDKVSSVVSMLKGTLERKKL NQIEKEAV+DSSI        V N T  QGQGN   E  G F ++   QV + G  Q ++G MDLDLE FV P+N IQ+S VS+E SQSESSAAAPVIS+G DACDGPSNS QTLS+CES++KQ GN   SEN S++KE R+RI + NLKD+RK+
Sbjct:  230 TFNTPQMGNVDKVSSVVSMLKGTLERKKLSNQIEKEAVEDSSIGYYGAPEVVVNATLGQGQGNSIPESSGTFQEVSPVQVKDHGDFQIIEGSMDLDLEGFVAPLNPIQMSTVSQEPSQSESSAAAPVISAGFDACDGPSNSGQTLSVCESSRKQVGNGRYSENDSRTKEIRQRIFESNLKDERKK 414          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: M5WED9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024275mg PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.586e-53
Identity = 115/185 (62.16%), Postives = 138/185 (74.59%), Query Frame = -3
Query:   12 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS---------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQ 539
            TFN  Q  ++DKVSSVVSMLKGTLERKKL NQIEKE V+D S         I+ N  F+QGQG+  HE+ G F ++   QV +  + Q V+G +DL++E FVN  N   LS  S+E SQSESSAAAPV+SSG DACDGPSNSSQTLSICES+ K+AGN  +SENGSKSK+FRERII NLKDD+K+
Sbjct:  230 TFNTPQMSDMDKVSSVVSMLKGTLERKKLSNQIEKEGVEDDSSNGLFSAQEIIVNTGFDQGQGDRIHELAGTFQEVSTIQVNDHRITQNVEGSLDLEMEGFVNLRNPNPLSRNSQEPSQSESSAAAPVVSSGFDACDGPSNSSQTLSICESSMKRAGNR-SSENGSKSKDFRERIIGNLKDDQKR 413          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A067DXR1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0089331mg PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.658e-52
Identity = 104/162 (64.20%), Postives = 124/162 (76.54%), Query Frame = -3
Query:   60 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK 539
            TFN  QTGN+D VSSVVSMLKGTLERKKL NQIEKE  ++ S  +     F+ G GNH HE+ G   +L  GQV +PGV+Q +QG  DLDLE FVNP NT Q+S  SRE SQSESSAAAPV+SSG D CDGPSNSSQT+SICES++++ GN  +SENGS++K
Sbjct:  257 TFNTPQTGNIDNVSSVVSMLKGTLERKKLSNQIEKETFEEFSNGLYRAQEFSNGHGNHIHEMQGTLQELSAGQVKDPGVLQMIQGSFDLDLEGFVNPTNTNQMSTFSREPSQSESSAAAPVVSSGFDTCDGPSNSSQTVSICESSRRRVGNGKSSENGSRAK 418          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A059CJR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02592 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.348e-49
Identity = 104/183 (56.83%), Postives = 130/183 (71.04%), Query Frame = -3
Query:   12 FNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQ 536
             NA    N+D+VSSVVSMLKGTLERKKL NQIE+E  +D S        I+ N +F QG G+H HE+   F +   GQ     ++  V+  MDLD E  +N  N I + AVS+E SQSESSAAAP++SSG DACDGPSNSSQTLS+CES++K  G+  + ENGSK+K+FRERIIDNLKDD+K+
Sbjct:  225 MNAQPIKNLDRVSSVVSMLKGTLERKKLANQIERETFEDCSQGSFQAQDILANTSFQQGHGDHIHELSLMFHEASQGQAEGLALLPNVERSMDLDFEQLINTRNPINVRAVSQEPSQSESSAAAPIVSSGFDACDGPSNSSQTLSVCESSRKNVGDTISPENGSKAKDFRERIIDNLKDDKKR 407          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A059CJ37_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02592 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.405e-47
Identity = 104/185 (56.22%), Postives = 130/185 (70.27%), Query Frame = -3
Query:   12 FNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK--EFRERIIDNLKDDRKQ 536
             NA    N+D+VSSVVSMLKGTLERKKL NQIE+E  +D S        I+ N +F QG G+H HE+   F +   GQ     ++  V+  MDLD E  +N  N I + AVS+E SQSESSAAAP++SSG DACDGPSNSSQTLS+CES++K  G+  + ENGSK+K  +FRERIIDNLKDD+K+
Sbjct:  225 MNAQPIKNLDRVSSVVSMLKGTLERKKLANQIERETFEDCSQGSFQAQDILANTSFQQGHGDHIHELSLMFHEASQGQAEGLALLPNVERSMDLDFEQLINTRNPINVRAVSQEPSQSESSAAAPIVSSGFDACDGPSNSSQTLSVCESSRKNVGDTISPENGSKAKGADFRERIIDNLKDDKKR 409          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A0A0L144_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005540 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.727e-41
Identity = 102/183 (55.74%), Postives = 128/183 (69.95%), Query Frame = -3
Query:   12 FNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQ 536
            FN     +VDK+SSVV+MLKGTLERKKL NQI+KEA +DSS         + N +FN+G  N+ H IP  F D    QV +  +++ V+   DL  EAFVNP+N IQ   VS+E SQSESSAAA ++SSG +ACDGPSNS+QT S  ES++KQ   +   EN S+SK+FRERIIDNLKDDRK+
Sbjct:  318 FNTPNMYDVDKISSVVNMLKGTLERKKLNNQIDKEAPEDSSNAHFCAQETIGNPSFNRGSDNYIHPIPNSFHDFSPVQVKDSRILETVEVSADLGFEAFVNPVNPIQSGRVSQEPSQSESSAAAAIVSSGFEACDGPSNSNQTHSNGESSRKQVAGSRGLENESRSKDFRERIIDNLKDDRKR 500          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A068V357_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_93 OS=Coffea canephora GN=GSCOC_T00042453001 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.015e-39
Identity = 94/181 (51.93%), Postives = 121/181 (66.85%), Query Frame = -3
Query:    6 QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 524
            Q GNVD +SSVV+MLKGTLERKKLGN +EKEAV DSS        +  N   NQ + N  +E+ G F DL   Q+T  G++Q V+G     LE  +   N IQ+S VSRE SQSESSAAAPV+S+G + CDGPS S Q  ++CES++K      +SE GS+ K+ RER+ +NLKDD+K+ G
Sbjct:  233 QGGNVDNISSVVTMLKGTLERKKLGNSVEKEAVDDSSFGCYGSEEVFGNTVLNQ-ERNQAYEMQGTFHDLSAVQITEAGIMQTVEGSFGFGLEGMIPHTNVIQMSIVSREPSQSESSAAAPVVSTGFEVCDGPSTSGQAPTVCESSRKHVDYARSSEYGSRIKDVRERMYNNLKDDKKKEG 412          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: W9QXI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006355 PE=4 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.442e-37
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = -3
Query:   60 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS---------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK 539
            TFN      +DKVSS+VSMLKGTLERKKL NQ EKE ++ +S         ++ +  F QGQ N  HE P  F ++   QV + GV+Q + G M+L+L+ FVN  N IQLS VS+E SQSESSAAAPV+SSG DACDGPSNSSQ +S+ ES++KQ+ N  +SENGS++K
Sbjct:  227 TFNTKPIAEMDKVSSLVSMLKGTLERKKLNNQTEKEVLEHNSYNGVFPAQEVMVSANFIQGQRNQIHERPLTFHEVSPMQVKDGGVMQMIDGSMELELDGFVNSTNPIQLSRVSQEPSQSESSAAAPVLSSGFDACDGPSNSSQAISVSESSRKQSRNR-SSENGSRAK 394          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A9XMT3_LOTJA (CYCLOPS OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.459e-36
Identity = 96/194 (49.48%), Postives = 130/194 (67.01%), Query Frame = -3
Query:    9 PSNSSSSTFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKD---------SSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENG-SKSKEFRERIIDNLKDDRKQR 560
            PSNS SS FN  Q G++DKVSS VSMLKGTL+R++L +Q+EKEA +D           +   G F+QGQ N  ++ P       +G+V + GV+Q ++G  +  ++ F N IN I +   S E SQSESS AAPVISSGLD C+GP NS+QTL  CES+ KQ G + +SEN  ++ K FRE+I+DNLKDD+K++
Sbjct:  215 PSNSCSSNFNTPQFGDMDKVSSCVSMLKGTLQRRRLSSQLEKEAAEDDLNGIFYPQEPLFQTG-FDQGQENWSNQTPVNVQVDSIGEVKDHGVLQTLEGSTNPVVDGFANQINQIYVGTASGEPSQSESSNAAPVISSGLDTCEGPINSNQTL--CESSWKQVGVSKSSENTQNRVKGFREQIMDNLKDDKKRK 405          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: K4CMU3_SOLLC (RMC OS=Solanum lycopersicum GN=Solyc08g075760.2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.493e-34
Identity = 87/187 (46.52%), Postives = 117/187 (62.57%), Query Frame = -3
Query:    6 TFNALQTGNVDKVSSVVSMLKGTLERKKLGN-QIEKEAVKDS--------SIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 539
            TF A Q   VD +SSVVSMLKGTLERKKL N    +EA++++         I  N   NQ  GNH     G + D P+ QV + G+ Q VQG +D  LE+ + P N IQ+  V++E SQS SS AAP++S   DA DG SN+SQ L++ E  + Q G   +SENGS +++ RERI DN+KD++K+ G
Sbjct:  227 TFEAQQVDGVDNISSVVSMLKGTLERKKLTNYHTAREAIEENMLGCYGNQEIFCNSDMNQHPGNHISLNQGTYQDTPVVQVRDTGIPQTVQGSLDAVLESIMAPSNPIQIDMVTQEPSQSGSSVAAPILSIDFDAYDGLSNASQALNMYEGCRNQVGYGRSSENGSTARDIRERIYDNVKDNQKKEG 413          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F6I094_VITVI4.753e-5664.32Putative uncharacterized protein OS=Vitis vinifera... [more]
M5WED9_PRUPE1.586e-5362.16Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067DXR1_CITSI1.658e-5264.20Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
A0A059CJR0_EUCGR3.348e-4956.83Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A059CJ37_EUCGR2.405e-4756.22Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A0A0L144_CUCSA1.727e-4155.74Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A068V357_COFCA1.015e-3951.93Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
W9QXI5_9ROSA2.442e-3755.03Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A9XMT3_LOTJA3.459e-3649.48CYCLOPS OS=Lotus japonicus PE=2 SV=1[more]
K4CMU3_SOLLC7.493e-3446.52RMC OS=Solanum lycopersicum GN=Solyc08g075760.2 PE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36890FAMILY NOT NAMEDcoord: 1..160

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010737 ID=g.arboreum_cottongen_reftransV1_0010737; Name=g.arboreum_cottongen_reftransV1_0010737; organism=Gossypium arboreum; type=contig; length=562bp
AGGCCTCCCCTTTGCTTCCGATCATCTTTCAAGTTGTCAATTATCCTTTC
TCTGAATTCTTTAGATTTAGAGCCATTTTCTGAGTTCCAGTTGTTTCCAG
CTTGTTTCTTTGTGCTTTCACATATGCTTAAGGTTTGACTTGAGTTGCTC
GGGCCATCACATGCATCCAAACCAGATGAAATCACCGGTGCAGCAGCCGA
GGATTCGCTTTGAGAAGCTTCTCGAGAAACTGCGCTCAACTGAATTGTGT
TTATGGGATTTACAAAAGCTTCCAAGTCAAGATCCATAGGCCCCTGAACA
GCTTGTACAACCCCGGGATTTGTTACTTGGCCAAGGGGTAAGTCTGCGAA
ACCCCCTGGAATTTCATGAAAATGATTCCCTTGTCCTTGGTTGAAGGTGC
CATTAGGCACAATAGAACTATCTTTGACCGCTTCTTTCTCGATTTGGTTG
CCGAGCTTTTTACGTTCTAGTGTACCCTTTAGCATGCTCACAACGGAAGA
AACTTTATCTACATTTCCAGTTTGGAGTGCATTAAATGTAGATGAGGATG
AATTTGATGGAG
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