g.arboreum_cottongen_reftransV1_0001983, g.arboreum_cottongen_reftransV1_0001983 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: K7M8S0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 3.234e-54 Identity = 87/137 (63.50%), Postives = 114/137 (83.21%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411 M+DS++ IYNVR+DEVKSKL+GH+KRITGLAFS +LN+LVSSGADAQI VW+ + WE++ +LQ PAGRTP A++DT++QFHQDQ + L V+ETQ+AIY+ K+EC+KQ ++SA ISHATFSCDS L+Y F+ Sbjct: 898 MDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFL 1034
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A0B2QRW6_GLYSO (Topless-related protein 1 OS=Glycine soja GN=glysoja_024936 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 3.378e-54 Identity = 87/137 (63.50%), Postives = 114/137 (83.21%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411 M+DS++ IYNVR+DEVKSKL+GH+KRITGLAFS +LN+LVSSGADAQI VW+ + WE++ +LQ PAGRTP A++DT++QFHQDQ + L V+ETQ+AIY+ K+EC+KQ ++SA ISHATFSCDS L+Y F+ Sbjct: 896 MDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFL 1032
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: I1M5W3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 3.484e-54 Identity = 87/137 (63.50%), Postives = 114/137 (83.21%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411 M+DS++ IYNVR+DEVKSKL+GH+KRITGLAFS +LN+LVSSGADAQI VW+ + WE++ +LQ PAGRTP A++DT++QFHQDQ + L V+ETQ+AIY+ K+EC+KQ ++SA ISHATFSCDS L+Y F+ Sbjct: 900 MDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFL 1036
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A0B2SIR0_GLYSO (Topless-related protein 1 OS=Glycine soja GN=glysoja_031858 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 3.484e-54 Identity = 87/137 (63.50%), Postives = 114/137 (83.21%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411 M+DS++ IYNVR+DEVKSKL+GH+KRITGLAFS +LN+LVSSGADAQI VW+ + WE++ +LQ PAGRTP A++DT++QFHQDQ + L V+ETQ+AIY+ K+EC+KQ ++SA ISHATFSCDS L+Y F+ Sbjct: 900 MDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFL 1036
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: I1KGY0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 3.639e-54 Identity = 87/137 (63.50%), Postives = 113/137 (82.48%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411 M+DS++ IYNVR+DEVKSKL+GH+KRITGLAFS +LN+LVSSGADAQI VW+ + WE++ +LQ P+GRTP A+SDT++QFHQDQ Q L V+ETQ+AIY+ K+E +KQ ++SA IS+ATFSCDS LVY F+ Sbjct: 330 MDDSSIQIYNVRVDEVKSKLKGHNKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPSGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVYASFL 466
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR1_ARATH (Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3) HSP 1 Score: 189.889 bits (481), Expect = 1.215e-54 Identity = 85/137 (62.04%), Postives = 112/137 (81.75%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411 M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++ LQ P GR+ ++ SDT++QFHQDQ L V+ETQ+AIY+ K+EC+KQ + E++A I+HATFSCDS L+YT F+ Sbjct: 885 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFM 1021
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPL_ARATH (Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.240e-53 Identity = 86/137 (62.77%), Postives = 109/137 (79.56%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411 M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++ L P GR +A SDT++QFHQDQ L V+ETQ+AIY+ K+EC+KQ A+ E+ A I+HATFSCDS LVY F+ Sbjct: 896 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVYASFM 1032
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR3_ARATH (Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.154e-47 Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEA-SASISHATFSCDSLLVYTGF 408 MEDST++IYNVR+DEVKSKL+GH KRITGLAFS LNILVSSGADAQI W ++ WE++ +Q PAG+ A DT++QFH DQ ++L V+ETQ+A++D KMECI+Q ++ SA IS A ++C+S L+YT F Sbjct: 881 MEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTTF 1015
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR2_ARATH (Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 4.694e-46 Identity = 79/137 (57.66%), Postives = 101/137 (73.72%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEA-SASISHATFSCDSLLVYTGF 408 MEDS+++IYNVR+DEVK+KL+GH K ITGLAFS LNILVSSGADAQ+ W ++WE+K +Q P G+ P DT++QFH DQ QLL +ETQ+AIYD KMECI + EA S+ I+ A++SC+S LVY F Sbjct: 892 MEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVYASF 1026
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR4_ARATH (Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 5.435e-44 Identity = 70/136 (51.47%), Postives = 102/136 (75.00%), Query Frame = 1 Query: 1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGF 408 M+DS++ IYNVR+DEVKSKL+GH KR+TGLAFS +LN+LVSSGAD+Q+ VW ++ WE++ +Q P+G +P + T++QFHQDQ +L V+ +Q+AIY+ K+E +KQ E+S S++ A +SCDS +Y F Sbjct: 906 MDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAF 1041
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum GN=LACK1 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 6.841e-8 Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1 Query: 7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405 D+T+ ++NV + + L+GHS ++ + SP ++ S G D ++WDL+ E+ ++SP QI F ++ + E +++YD+ I +L A S IS A +S D +Y+G Sbjct: 173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 6.841e-8 Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1 Query: 7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405 D+T+ ++NV + + L+GHS ++ + SP ++ S G D ++WDL+ E+ ++SP QI F ++ + E +++YD+ I +L A S IS A +S D +Y+G Sbjct: 173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 7.731e-8 Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1 Query: 7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405 D+T+ ++NV + + L+GHS ++ + SP ++ S G D ++WDL+ E+ ++SP QI F ++ + E +++YD+ I +L A S IS A +S D +Y+G Sbjct: 173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIGFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 4.209e-7 Identity = 33/135 (24.44%), Postives = 66/135 (48.89%), Query Frame = 1 Query: 4 EDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVN-ETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTG 405 +D T+ I++V ++ L+GH + + G++F+P N++VS D + +WD+N E C A P T + F++D T +++ + + + I+D + + ++ E +S FS + V G Sbjct: 108 DDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGE----CTKMISAHSDPV----TGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTIST-EDGKEVSFVKFSPNGKFVLAG 233 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 9
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001983 ID=g.arboreum_cottongen_reftransV1_0001983; Name=g.arboreum_cottongen_reftransV1_0001983; organism=Gossypium arboreum; type=contig; length=411bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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