g.arboreum_cottongen_reftransV1_0001983, g.arboreum_cottongen_reftransV1_0001983 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001983
Unique Name	g.arboreum_cottongen_reftransV1_0001983
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	411

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0001983:1..411 . Chr4:33204875..33205482 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A067EMZ5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0012242mg PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.508e-55
Identity = 87/137 (63.50%), Postives = 111/137 (81.02%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DS++ IYNVR+DEVKSKL+GHSKRITGLAFS  LN+LVSSGAD+Q+ VW  + WE++   +LQ P GRTPTA+SDT++QFHQDQ   L V+ETQ+AI++  K+EC+KQ    E+SA I+HATFSCDS LVY  F+
Sbjct:  312 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL 448

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: N0BJZ6_MEDTR (Topless OS=Medicago truncatula GN=TPL PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 5.480e-55
Identity = 88/137 (64.23%), Postives = 115/137 (83.94%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DS++ IYNVR+DEVKSKL+GH+KRITGLAFS +LN+LVSSGADAQI VW+ + WE++   +LQ P GRTP+A+SDT++QFHQDQ Q L V+ETQ+AI++  K+EC+KQ A  ++SA ISHATFSCDS L+Y  F+
Sbjct:  902 MDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFL 1038

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: G7JGU9_MEDTR (Topless-like protein OS=Medicago truncatula GN=MTR_4g009840 PE=4 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 5.796e-55
Identity = 88/137 (64.23%), Postives = 115/137 (83.94%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DS++ IYNVR+DEVKSKL+GH+KRITGLAFS +LN+LVSSGADAQI VW+ + WE++   +LQ P GRTP+A+SDT++QFHQDQ Q L V+ETQ+AI++  K+EC+KQ A  ++SA ISHATFSCDS L+Y  F+
Sbjct:  902 MDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFL 1038

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A068TPP8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00022199001 PE=4 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 8.666e-55
Identity = 89/137 (64.96%), Postives = 112/137 (81.75%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++   +LQ P+GRTP A+SDT++QFHQDQ   L V+ETQ+AIY+  K+EC+KQ    E+ A ISHATFSCDS LVY  F+
Sbjct:  896 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSDGWEKQKARFLQIPSGRTPMAQSDTRVQFHQDQIHFLVVHETQLAIYETTKLECVKQWLPRESGAPISHATFSCDSQLVYASFL 1032

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A059BWY5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03923 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.260e-54
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGF 408
            M+DSTV IYNVR+DEVKSKL+GHSKRITGLAFS  LN+LVSSGADAQI VW  + WE++   YLQ P GRTP A+SDT++QFHQDQ   LAV+ TQ+A+Y+  K+EC+KQ    E+SA ISHATFSCDS LVY  F
Sbjct:  903 MDDSTVQIYNVRVDEVKSKLKGHSKRITGLAFSNTLNVLVSSGADAQICVWSSDVWEKQKSTYLQIPPGRTPGAQSDTRVQFHQDQMHFLAVHGTQLAVYEATKLECMKQWVPYESSAPISHATFSCDSQLVYASF 1038

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A059BXN7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03923 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.450e-54
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGF 408
            M+DSTV IYNVR+DEVKSKL+GHSKRITGLAFS  LN+LVSSGADAQI VW  + WE++   YLQ P GRTP A+SDT++QFHQDQ   LAV+ TQ+A+Y+  K+EC+KQ    E+SA ISHATFSCDS LVY  F
Sbjct:  884 MDDSTVQIYNVRVDEVKSKLKGHSKRITGLAFSNTLNVLVSSGADAQICVWSSDVWEKQKSTYLQIPPGRTPGAQSDTRVQFHQDQMHFLAVHGTQLAVYEATKLECMKQWVPYESSAPISHATFSCDSQLVYASF 1019

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A059BXB1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03923 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.450e-54
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGF 408
            M+DSTV IYNVR+DEVKSKL+GHSKRITGLAFS  LN+LVSSGADAQI VW  + WE++   YLQ P GRTP A+SDT++QFHQDQ   LAV+ TQ+A+Y+  K+EC+KQ    E+SA ISHATFSCDS LVY  F
Sbjct:  884 MDDSTVQIYNVRVDEVKSKLKGHSKRITGLAFSNTLNVLVSSGADAQICVWSSDVWEKQKSTYLQIPPGRTPGAQSDTRVQFHQDQMHFLAVHGTQLAVYEATKLECMKQWVPYESSAPISHATFSCDSQLVYASF 1019

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A067KLL5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06088 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.546e-54
Identity = 90/137 (65.69%), Postives = 113/137 (82.48%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+D+T+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++   +LQ PAGRT T +SDT++QFHQDQ Q L V+ETQ+AIY+  K+EC+KQ    E+SA ISHATFSCDS LVY  F+
Sbjct:  906 MDDNTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSDGWEKQKTRFLQVPAGRTTTGQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECVKQWVTRESSAPISHATFSCDSQLVYACFL 1042

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A022Q1M9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000459mg PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.890e-54
Identity = 88/137 (64.23%), Postives = 114/137 (83.21%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++   +LQ P+GR+P A+S+T++QFHQDQ   L V+ETQ+AIY+  K+EC+KQ A  E++A ISHATFSCDS LVY  F+
Sbjct:  903 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSDGWEKQKSRFLQLPSGRSPGAQSETRVQFHQDQLHFLVVHETQLAIYETTKLECVKQWAPRESTAPISHATFSCDSQLVYASFL 1039

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: B9RVD2_RICCO (WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0902410 PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 2.592e-54
Identity = 90/137 (65.69%), Postives = 111/137 (81.02%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++   +LQ P GRT T +SDT++QFHQDQ Q L V+ETQ+AIY+  K+EC KQ    E+SA ISHATFSCDS LVY  F+
Sbjct:  881 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSDGWEKQKTRFLQVPPGRTTTGQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECTKQWVTRESSAPISHATFSCDSQLVYASFL 1017

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR1_ARATH (Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.215e-54
Identity = 85/137 (62.04%), Postives = 112/137 (81.75%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++    LQ P GR+ ++ SDT++QFHQDQ   L V+ETQ+AIY+  K+EC+KQ  + E++A I+HATFSCDS L+YT F+
Sbjct:  885 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFM 1021

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPL_ARATH (Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.240e-53
Identity = 86/137 (62.77%), Postives = 109/137 (79.56%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++    L  P GR  +A SDT++QFHQDQ   L V+ETQ+AIY+  K+EC+KQ A+ E+ A I+HATFSCDS LVY  F+
Sbjct:  896 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVYASFM 1032

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR3_ARATH (Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.154e-47
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEA-SASISHATFSCDSLLVYTGF 408
            MEDST++IYNVR+DEVKSKL+GH KRITGLAFS  LNILVSSGADAQI  W ++ WE++    +Q PAG+   A  DT++QFH DQ ++L V+ETQ+A++D  KMECI+Q    ++ SA IS A ++C+S L+YT F
Sbjct:  881 MEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTTF 1015

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR2_ARATH (Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 4.694e-46
Identity = 79/137 (57.66%), Postives = 101/137 (73.72%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEA-SASISHATFSCDSLLVYTGF 408
            MEDS+++IYNVR+DEVK+KL+GH K ITGLAFS  LNILVSSGADAQ+  W  ++WE+K    +Q P G+ P    DT++QFH DQ QLL  +ETQ+AIYD  KMECI +    EA S+ I+ A++SC+S LVY  F
Sbjct:  892 MEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVYASF 1026

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR4_ARATH (Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 5.435e-44
Identity = 70/136 (51.47%), Postives = 102/136 (75.00%), Query Frame = 1

Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGF 408
            M+DS++ IYNVR+DEVKSKL+GH KR+TGLAFS +LN+LVSSGAD+Q+ VW ++ WE++    +Q P+G +P   + T++QFHQDQ  +L V+ +Q+AIY+  K+E +KQ    E+S S++ A +SCDS  +Y  F
Sbjct:  906 MDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAF 1041

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum GN=LACK1 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 6.841e-8
Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1

Query:    7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405
            D+T+ ++NV   + +  L+GHS  ++ +  SP  ++  S G D   ++WDL+  E+     ++SP           QI F  ++  +    E  +++YD+     I +L    A  S  IS A +S D   +Y+G
Sbjct:  173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 6.841e-8
Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1

Query:    7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405
            D+T+ ++NV   + +  L+GHS  ++ +  SP  ++  S G D   ++WDL+  E+     ++SP           QI F  ++  +    E  +++YD+     I +L    A  S  IS A +S D   +Y+G
Sbjct:  173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 7.731e-8
Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1

Query:    7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405
            D+T+ ++NV   + +  L+GHS  ++ +  SP  ++  S G D   ++WDL+  E+     ++SP           QI F  ++  +    E  +++YD+     I +L    A  S  IS A +S D   +Y+G
Sbjct:  173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIGFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 4.209e-7
Identity = 33/135 (24.44%), Postives = 66/135 (48.89%), Query Frame = 1

Query:    4 EDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVN-ETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTG 405
            +D T+ I++V   ++   L+GH + + G++F+P  N++VS   D  + +WD+N  E    C     A   P     T + F++D T +++ + +  + I+D    + +  ++  E    +S   FS +   V  G
Sbjct:  108 DDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGE----CTKMISAHSDPV----TGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTIST-EDGKEVSFVKFSPNGKFVLAG 233

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067EMZ5_CITSI	3.508e-55	63.50	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
N0BJZ6_MEDTR	5.480e-55	64.23	Topless OS=Medicago truncatula GN=TPL PE=2 SV=1	[more]
G7JGU9_MEDTR	5.796e-55	64.23	Topless-like protein OS=Medicago truncatula GN=MTR...	[more]
A0A068TPP8_COFCA	8.666e-55	64.96	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
A0A059BWY5_EUCGR	1.260e-54	67.65	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A059BXN7_EUCGR	1.450e-54	67.65	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A059BXB1_EUCGR	1.450e-54	67.65	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A067KLL5_JATCU	1.546e-54	65.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A022Q1M9_ERYGU	1.890e-54	64.23	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
B9RVD2_RICCO	2.592e-54	65.69	WD-repeat protein, putative OS=Ricinus communis GN...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9


Match Name	E-value	Identity	Description
TPR1_ARATH	1.215e-54	62.04	Topless-related protein 1 OS=Arabidopsis thaliana ...	[more]
TPL_ARATH	1.240e-53	62.77	Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=...	[more]
TPR3_ARATH	4.154e-47	58.39	Topless-related protein 3 OS=Arabidopsis thaliana ...	[more]
TPR2_ARATH	4.694e-46	57.66	Topless-related protein 2 OS=Arabidopsis thaliana ...	[more]
TPR4_ARATH	5.435e-44	51.47	Topless-related protein 4 OS=Arabidopsis thaliana ...	[more]
GBLP_LEIIN	6.841e-8	26.67	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_LEICH	6.841e-8	26.67	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_LEIMA	7.731e-8	26.67	Guanine nucleotide-binding protein subunit beta-li...	[more]
WDR5_DICDI	4.209e-7	24.44	WD repeat-containing protein 5 homolog OS=Dictyost...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 13..52 e-value: 7.3E-7 score: 38.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 18..52 e-value: 2.3E-5 score: 24.9
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 20..55 score: 14.485
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 2..135 e-value: 2.1E-19 score: 68.6
IPR027728	Topless family	PANTHER	PTHR22847:SF480	PROTEIN TOPLESS-RELATED	coord: 1..137
None	No IPR available	PANTHER	PTHR22847	WD40 REPEAT PROTEIN	coord: 1..137
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 39..53
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..61 score: 15.9
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 2..135

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001983 ID=g.arboreum_cottongen_reftransV1_0001983; Name=g.arboreum_cottongen_reftransV1_0001983; organism=Gossypium arboreum; type=contig; length=411bp
ATGGAGGATTCCACGGTTTACATCTACAATGTTCGTCTAGATGAGGTCAA
GAGCAAGCTTAGGGGTCACTCTAAGAGAATTACTGGTCTTGCCTTTTCCC
CTCTGTTGAATATACTAGTTTCTTCTGGAGCTGATGCCCAGATCATTGTA
TGGGACTTGAATAATTGGGAAAGGAAGAATGGATGCTATTTGCAATCTCC
AGCAGGAAGGACACCTACAGCAAGGTCAGACACCCAGATACAGTTTCACC
AGGATCAGACACAGTTGCTCGCTGTAAACGAAACTCAAATTGCCATATAT
GACATGAGGAAAATGGAGTGTATAAAGCAGTTGGCTATAGGAGAAGCTTC
AGCATCAATCTCCCATGCAACATTTTCATGTGATAGCCTGTTAGTGTACA
CCGGTTTCGTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_rpt
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR027728	Topless_fam
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Search form

g.arboreum_cottongen_reftransV1_0001983, g.arboreum_cottongen_reftransV1_0001983 (contig) Gossypium arboreum

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