g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B2PMC8_GLYSO (FACT complex subunit SPT16 OS=Glycine soja GN=glysoja_032183 PE=4 SV=1) HSP 1 Score: 498.049 bits (1281), Expect = 2.308e-165 Identity = 244/268 (91.04%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 497.278 bits (1279), Expect = 4.933e-165 Identity = 243/268 (90.67%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNR+NDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRLNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: B9I6M8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00590g PE=4 SV=2) HSP 1 Score: 497.664 bits (1280), Expect = 5.505e-165 Identity = 247/268 (92.16%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRPVF GRGRK+PG LE HVNGFR+ST+R++ERVD+M+ NIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLW QPQF+GLDLEFDQPLRELGFHGVP+K ++FIVPTSSCLVELVETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLTDLWIRPVFTGRGRKLPGALEAHVNGFRFSTSRSEERVDIMFSNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWSQPQFSGLDLEFDQPLRELGFHGVPHKVTSFIVPTSSCLVELVETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 496.508 bits (1277), Expect = 9.991e-165 Identity = 243/268 (90.67%), Postives = 258/268 (96.27%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER RKNKIN++FQ+FVNRVNDLWGQPQFNG DLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 675 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERQRKNKINVEFQTFVNRVNDLWGQPQFNGFDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A022PYU2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001381mg PE=4 SV=1) HSP 1 Score: 488.419 bits (1256), Expect = 3.678e-164 Identity = 237/268 (88.43%), Postives = 259/268 (96.64%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRPVFGGRGRK+ GTLE H NGFRYST+R+DERVD+M+ N+KHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQT+GGGKRSAYDPDEIEEEQRERDRKNKI+MDFQ+FVNRVNDLWGQPQF DLEFDQPLRELGFHGVP+K+SAFIVPTSSCLVEL+ETPF+V++L+EIEIVNLERVGLGQKNFDMTIVFKDFK+DV+RIDSIP +SLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDP+ Sbjct: 433 FKPIRLSDLWIRPVFGGRGRKLSGTLEAHSNGFRYSTSRSDERVDIMFANVKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKISMDFQNFVNRVNDLWGQPQFKSFDLEFDQPLRELGFHGVPHKSSAFIVPTSSCLVELIETPFVVITLAEIEIVNLERVGLGQKNFDMTIVFKDFKRDVMRIDSIPQSSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPK 700
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CANAL (FACT complex subunit SPT16 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPT16 PE=3 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 6.902e-63 Identity = 124/273 (45.42%), Postives = 173/273 (63.37%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-------STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 +L +++IRP +KI G L+ H NG RY S + D+RVDV++ NIKH FFQP + E+I L+H HL N IM+G +KT DVQFY E D+ GG++ Y DE+++EQ ER RK ++ +F+ F + D +G+ ++ D P RELGF GVP+++S VPT CLV+L++ P+LVV+L EIEI +LERV G KNFD+ VFKDF K V+ I++IP L+ +K WL DI E ++NLNW QI+KT+ DP Sbjct: 698 KLNNVFIRPT--PDTKKIGGVLQIHENGLRYQSQPQSQSNFKNDQRVDVLFSNIKHLFFQPCKDELIVLIHCHLKNPIMIGKRKTFDVQFYREASDMAFDETGGRKRKYRYGDEDELQQEQEERRRKALLDKEFKGFAELIAD-----SSHGM-VDLDIPFRELGFQGVPFRSSVLCVPTRDCLVQLIDPPYLVVTLEEIEIAHLERVQFGLKNFDLVFVFKDFNKPVVHINTIPVELLEDVKSWLTDVDIPISEGQMNLNWVQIMKTVLADP 962
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASHGO (FACT complex subunit SPT16 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPT16 PE=3 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 1.651e-61 Identity = 121/272 (44.49%), Postives = 172/272 (63.24%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 RL +++RP +++PGT+ H NG RY S R D R+D+++ N+K+ FFQP + E+I ++H HL N I++G KK +DVQFY E D+ V G G+R+ DE+E+EQ ER ++ ++ +F+ F + + NGL +E D P R+LGF GVP +++ F +PT CL++LVE PFLVV+LSE+EI LERV G KNFDM V+KDF K V I++IP L+ IK WL DI Y S +NLNW I+K++ DDP Sbjct: 675 RLDQIFVRP--SPDTKRVPGTVFIHENGIRYQSPLRTDSRIDILFSNVKNLFFQPCKGELIVIIHIHLKNPILMGKKKIQDVQFYREASDMAVDETGNGRRNQMKFRRYGDEDELEQEQEERRKRAALDKEFRYFAEAIAEAS-----NGL-VEVDHPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVVNLSEVEICILERVQFGLKNFDMVFVYKDFTKPVTHINTIPIEQLEFIKSWLTDVDIPYTVSTINLNWATIMKSLQDDPH 938
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_NEUCR (FACT complex subunit ctc-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ctc-2 PE=3 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 3.747e-61 Identity = 115/268 (42.91%), Postives = 179/268 (66.79%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKK-TKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTIT 793 +P L +++IRP G+++PG +E H NG RY S +RVD+++ N++H FFQP + E+I ++H HL + I++GNKK TKDVQFY E D+ G ++ Y DE E EQ ER R+ +++ F+SF ++ + G+ + +E D PLR+LGF+GVP++++ +I PT+ CL+++ E PF+V++L +IE+ +LERV G KNFD+ VFKDF + I++IP SL+ +KE+LD++DI + E LNLNW I+KT+T Sbjct: 666 RPAVLDNVFIRPAM--EGKRVPGKVEIHQNGIRYQSPLSTTQRVDILFSNVRHLFFQPCQHELIVIIHIHLKDPIIIGNKKKTKDVQFYREATDIQFDETGNRKRKYRYGDEDEFEAEQEERRRRAELDRLFKSFAEKIAEA-GRNE----GIEVDMPLRDLGFNGVPFRSNVYIQPTTECLIQITEPPFMVITLEDIEVAHLERVQFGLKNFDLVFVFKDFTRPPYHINTIPVESLEDVKEFLDSSDIAFSEGPLNLNWGVIMKTVT 926
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_YEAST (FACT complex subunit SPT16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT16 PE=1 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.762e-57 Identity = 115/271 (42.44%), Postives = 170/271 (62.73%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 RL +++RP +++P T+ H NG R+ S R D R+D+++ NIK+ FQ + E+I ++H HL N I++G KK +DVQFY E D+ V GGG+R DE+E+EQ ER ++ ++ +F+ F + + + NGL L + R+LGF GVP +++ F +PT+ CLV+L+E PFLV++L E+EI LERV G KNFDM V+KDF K V I+++P SLD +K+WL DI Y S +NLNW I+K++ DDP Sbjct: 679 RLDQIFVRP--NPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGELIVVIHIHLKNPILMGKKKIQDVQFYREASDMSVDETGGGRRGQSRFRRYGDEDELEQEQEERRKRAALDKEFKYFADAIAEAS-----NGL-LTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVINLEEVEICILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWLTDMDIPYTVSTINLNWATIMKSLQDDP 941
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_KLULA (FACT complex subunit SPT16 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT16 PE=3 SV=2) HSP 1 Score: 201.445 bits (511), Expect = 5.106e-57 Identity = 114/272 (41.91%), Postives = 170/272 (62.50%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 RL +++RP +++PGT+ H NG RY S R D R+D+++ NIK+ FFQ ++ E+I ++H HL N I++G KK +D+QFY E D+ V G +R+ DE+E+EQ ER ++ ++ +F+ F + + +GL L+ D P R+LGF GVP +++ F +PT CL++LVE PFLV++L+E+EI LERV G KNFDM V+KD K V I+++P L+ IK WL DI Y S +NLNW I+K++ DDP Sbjct: 676 RLDQIFVRP--SPDTKRVPGTVFIHENGIRYQSPLRTDSRIDILFSNIKNLFFQSSKGELIVIIHVHLKNPILMGKKKIQDIQFYREASDMAVDETGNSRRNNMKFRRYGDEDELEQEQEERRKRAALDKEFRYFAEAIAE-----ASDGL-LDVDSPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVINLNEVEICILERVQFGLKNFDMVFVYKDLTKPVSHINTVPIEQLEFIKTWLTDVDIPYTVSTINLNWSTIMKSLQDDPH 939 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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