g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B2PMC8_GLYSO (FACT complex subunit SPT16 OS=Glycine soja GN=glysoja_032183 PE=4 SV=1) HSP 1 Score: 498.049 bits (1281), Expect = 2.308e-165 Identity = 244/268 (91.04%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 497.278 bits (1279), Expect = 4.933e-165 Identity = 243/268 (90.67%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNR+NDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRLNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: B9I6M8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00590g PE=4 SV=2) HSP 1 Score: 497.664 bits (1280), Expect = 5.505e-165 Identity = 247/268 (92.16%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRPVF GRGRK+PG LE HVNGFR+ST+R++ERVD+M+ NIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLW QPQF+GLDLEFDQPLRELGFHGVP+K ++FIVPTSSCLVELVETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLTDLWIRPVFTGRGRKLPGALEAHVNGFRFSTSRSEERVDIMFSNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWSQPQFSGLDLEFDQPLRELGFHGVPHKVTSFIVPTSSCLVELVETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 496.508 bits (1277), Expect = 9.991e-165 Identity = 243/268 (90.67%), Postives = 258/268 (96.27%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER RKNKIN++FQ+FVNRVNDLWGQPQFNG DLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 675 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERQRKNKINVEFQTFVNRVNDLWGQPQFNGFDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A022PYU2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001381mg PE=4 SV=1) HSP 1 Score: 488.419 bits (1256), Expect = 3.678e-164 Identity = 237/268 (88.43%), Postives = 259/268 (96.64%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRPVFGGRGRK+ GTLE H NGFRYST+R+DERVD+M+ N+KHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQT+GGGKRSAYDPDEIEEEQRERDRKNKI+MDFQ+FVNRVNDLWGQPQF DLEFDQPLRELGFHGVP+K+SAFIVPTSSCLVEL+ETPF+V++L+EIEIVNLERVGLGQKNFDMTIVFKDFK+DV+RIDSIP +SLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDP+ Sbjct: 433 FKPIRLSDLWIRPVFGGRGRKLSGTLEAHSNGFRYSTSRSDERVDIMFANVKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKISMDFQNFVNRVNDLWGQPQFKSFDLEFDQPLRELGFHGVPHKSSAFIVPTSSCLVELIETPFVVITLAEIEIVNLERVGLGQKNFDMTIVFKDFKRDVMRIDSIPQSSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPK 700
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASPOR (FACT complex subunit spt16 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt16 PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 5.869e-67 Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 +P+RLPD+++RP G+ ++PG +E H NG RY + +E VDV++ N+KH FFQP E+I L+H HL IM+G +KT+DVQFY E ++ G +R + +E E EQ ER R+ ++ +F++F ++ D G+ + G+D+ D P RE+GF GVP +++ I PT+ LV+L E PFLV++L+EIEI +LERV G KNFD+ VFKDF + + +++IP SL+G+K+WLD+ DI + E LNLNW I+KT+ DP Sbjct: 682 RPVRLPDVYLRPPLDGK--RVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDVQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDFHRPPVHVNTIPVESLEGVKDWLDSVDIAFTEGPLNLNWTTIMKTVVSDP 943
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DICDI (FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 6.610e-67 Identity = 121/264 (45.83%), Postives = 174/264 (65.91%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADER--VDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799 RLP++ RP G R I G LE H NG R++ T +R +DV+Y NIKHA +Q A++E + ++HFHLH+ +M+G KKTKDVQFY+E+ ++ Q+L R DE EEE+RER K KIN DF++F+ RV ++ +P LEFD P RELGF+GVP ++ FI P+ CL+ ++E PF V++L ++EI ER KNFD++ VFKD+ + +RI IP + +KEWLD+ +IK+Y+S N NW++I+ TI D Sbjct: 676 RLPEVHARPTLSGARRTI-GILEAHENGIRFNPTSTKDRTPIDVLYKNIKHAIYQQADQESMAVIHFHLHDALMIGKKKTKDVQFYIEISEMSQSLDVSSR---FNDEEEEERRERALKEKINNDFKTFIKRVEEIAPEP-----GLEFDVPYRELGFYGVPNVSTVFIQPSVHCLLSILEPPFFVLTLDDVEIACFERAIRSLKNFDLSFVFKDYNRPPIRISVIPRNYFETVKEWLDSFNIKFYQSERNYNWKRIMDTIKSD 930
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASPFU (FACT complex subunit spt16 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt16 PE=3 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 7.145e-67 Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 +P++LPD+++RP G+ ++PG +E H NG RY + +E VDV++ N+KH FFQP E+I L+H HL IM+G +KT+DVQFY E ++ G +R + +E E EQ ER R+ ++ +F++F ++ D G+ + G+D+ D P RE+GF GVP +++ I PT+ LV+L E PFLV++L+EIEI +LERV G KNFD+ VFKDF + + I++IP SL+G+K+WLD+ DI + E LNLNW I+KT+ DP Sbjct: 660 RPVKLPDVYLRPPLDGK--RVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDVQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVESLEGVKDWLDSVDIAFTEGPLNLNWTTIMKTVVSDP 921
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNB (FACT complex subunit SPT16 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SPT16 PE=3 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 8.714e-67 Identity = 124/269 (46.10%), Postives = 170/269 (63.20%), Query Frame = 2 Query: 8 PIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVV-QTLGGGKRSAYXXXXXXXXXXXXXXKNKINMD--FQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 P L +++ RP G G+K G +E H NG R+ ++D+++ NIKH FFQP+EKE+I ++H HL IM+G KKT DVQFY EV D+ GG KR A DE E EQ + DRK + +D F F R+ QF +LE D P RELGF+GVP+K+ ++PT++CL+ + E PF V++LSE+EIV+LERV G KNFDM V +D KK + I+SIP LD +KEWLD+ D+ E +NL+W I+KT+ +DP Sbjct: 668 PYVLKNVFPRP--GPEGKKTDGNVEIHQNGIRFRPDGPASKIDILFSNIKHLFFQPSEKELIVIIHVHLKAPIMLGKKKTSDVQFYREVADMSFDETGGKKRRARYGDEDEIEQEQEDRKRRAELDKLFHDFARRIETAAQAQQF---ELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLSEVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWLDSCDVPISEGPVNLSWPAIMKTVNEDPH 931
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNJ (FACT complex subunit SPT16 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SPT16 PE=3 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 9.818e-67 Identity = 124/269 (46.10%), Postives = 170/269 (63.20%), Query Frame = 2 Query: 8 PIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVV-QTLGGGKRSAYXXXXXXXXXXXXXXKNKINMD--FQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 P L +++ RP G G+K G +E H NG R+ ++D+++ NIKH FFQP+EKE+I ++H HL IM+G KKT DVQFY EV D+ GG KR A DE E EQ + DRK + +D F F R+ QF +LE D P RELGF+GVP+K+ ++PT++CL+ + E PF V++LSE+EIV+LERV G KNFDM V +D KK + I+SIP LD +KEWLD+ D+ E +NL+W I+KT+ +DP Sbjct: 668 PYVLKNVFPRP--GPEGKKTDGNVEIHQNGIRFRPDGPASKIDILFSNIKHLFFQPSEKELIVIIHVHLKAPIMLGKKKTSDVQFYREVADMSFDETGGKKRRARYGDEDEIEQEQEDRKRRAELDKLFHDFARRIETAAQAQQF---ELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLSEVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWLDSCDVPISEGPVNLSWPAIMKTVNEDPH 931
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_YARLI (FACT complex subunit SPT16 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SPT16 PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 5.570e-66 Identity = 118/271 (43.54%), Postives = 179/271 (66.05%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 +P++L +++RP G+++ GTLE H NG RY S R+D ++DV++ NIKH FFQP E E+I +H HL N I++G KKT DVQFY E D+ G ++ Y DE+E EQ ER R+ +++ +F++F ++++ + ++ D P RELGFHGVP++++ + P++ CLV+L++TPF V++L EIE+ +LERV G KNFD+ V+KDF + V I+SIP LD +K+WL+ +I Y E +NLNW I+KT+ DPQ Sbjct: 658 RPLKLDAVFVRP--APDGKRVAGTLEIHQNGLRYVSPIRSDHKIDVLFDNIKHLFFQPTEGELIVCIHAHLKNPILIGKKKTWDVQFYREASDMAFDETGNRKRKYRYGDEDELEAEQEERRRRLQLDKEFKAFSEKISEASDRK------VDVDTPFRELGFHGVPFRSNVLLQPSADCLVQLIDTPFSVITLGEIELAHLERVQFGLKNFDLVFVYKDFNRPVTHINSIPVDQLDAVKDWLNEVEIPYSEGPVNLNWGSIMKTVVADPQ 920
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_GIBZE (FACT complex subunit SPT16 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT16 PE=3 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 1.770e-65 Identity = 122/270 (45.19%), Postives = 179/270 (66.30%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKK-TKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799 +P L +++IRP G+++PG +E H NG RY S A RVDV++ N+KH FFQP + E+I ++H HL + I+VGNKK TKDVQFY E D+ G ++ Y DE E EQ ER R+ +++ FQ F ++ + G+ + +E D P+RELGFHGVP++++ F+ PT+ CL+++VE PF+V+++ E+EI +LERV G KNFDM VFKDF + +++IP LD +K++LD++DI Y E LNLNW I+KT+T D Sbjct: 667 RPAVLDNVYIRPAM--EGKRVPGKVEIHQNGIRYISPLNAQHRVDVLFSNVKHLFFQPCQHELIVIIHIHLKDPIIVGNKKKTKDVQFYREATDIQFDETGNRKRKYRYGDEDEFEAEQEERRRRAELDRLFQGFAQKIAEA-GRNE----GIEVDMPIRELGFHGVPFRSNVFVQPTTDCLIQVVEPPFMVITIEEVEIAHLERVQFGLKNFDMVFVFKDFTRAPYHVNTIPVEFLDQVKDYLDSSDIAYTEGPLNLNWPTIMKTVTAD 929
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_USTMA (FACT complex subunit SPT16 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT16 PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.042e-64 Identity = 115/266 (43.23%), Postives = 176/266 (66.17%), Query Frame = 2 Query: 17 LPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTT-RADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXX---XXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 LP+++ RP G+++PG L H NG R+S+ R D+++D+++ N+KH FFQP +KE+I ++H HL + IM+G +K KD+QFY E DV G ++ Y DEIE EQ ER R++++N +F+ F R+ + + + D P RELGF+GVP++ + + PT+ CLV L + PFLV++L+++EIV+LERV G ++FDM VF DF + + + SIP+TSLD +K+WLD+ DI E +NLNW I+KT+ +DP Sbjct: 667 LPEVFPRPAM--EGKRVPGDLTIHQNGLRFSSPLRPDQKIDLLFSNMKHLFFQPCDKELIVIVHIHLKSPIMIGKRKAKDIQFYREASDVQFDETGNRKRKYRSGDEDEIELEQEERRRRSQLNKEFKVFAERI------AEASEGRVSVDVPYRELGFNGVPFRTNVLLQPTTDCLVHLTDPPFLVITLTDVEIVHLERVQFGLQSFDMVFVFSDFSRAPMHVTSIPTTSLDDVKQWLDSVDICVTEGAVNLNWGAIMKTVNEDP 924
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DROME (FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2) HSP 1 Score: 221.09 bits (562), Expect = 5.785e-64 Identity = 120/264 (45.45%), Postives = 171/264 (64.77%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 +L DL+IRP +++ G+LE H NGFRY + R D +VD++Y NIK AFFQP + EMI LLHFHL IM G KK DVQFY EV ++ LG + +D D++ EQ ER+ ++K+ F+SF +V + +EFD P RELGF G P++++ + PTS LV L E P V++L ++E+V+ ERV +NFDM VFK++ K V +++IP LD +KEWL++ DI+Y E +LNW++I+KTITDDP+ Sbjct: 667 KLKDLYIRPNI--VTKRMTGSLEAHSNGFRYISVRGD-KVDILYNNIKSAFFQPCDGEMIILLHFHLKYAIMFGKKKHVDVQFYTEVGEITTDLGKHQH-MHDRDDLAAEQAERELRHKLKTAFKSFCEKVETMTKSV------VEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFERVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWLNSCDIRYSEGVQSLNWQKIMKTITDDPE 920
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DEBHA (FACT complex subunit SPT16 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SPT16 PE=3 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 5.596e-63 Identity = 119/267 (44.57%), Postives = 173/267 (64.79%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 +L ++IRP +KI G L+ H NG RY S+ R D++VD+++ NIKH FFQ + E+I ++H HL N IM+G KKT DVQFY E D+ GG++ Y DE+++EQ ER RK ++ +F++F ++D +G+ ++ D P RELGF GVP+++S +PT CL++L++ P+LVV+L EIEI +LERV G KNFD+ VFKDF K V+ I++IP L+ +K WL DI E ++NLNW I+KT+ DP Sbjct: 683 KLDQVFIRP--QPDTKKIGGVLQIHENGLRYQSSIRMDQKVDILFSNIKHLFFQSCKDELIVIIHCHLKNPIMIGKKKTHDVQFYREASDMAFDETGGRKRRYRYGDEDELQQEQEERRRKALLDKEFKAFAELISD-----SSSGM-VDLDIPFRELGFSGVPFRSSVLCMPTRDCLIQLIDPPYLVVTLEEIEIAHLERVQFGLKNFDLVFVFKDFNKSVVHINTIPMELLEDVKSWLTDVDIPISEGQMNLNWATIMKTVQSDP 941 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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