g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011262
Unique Nameg.arboreum_cottongen_reftransV1_0011262
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length806
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0011262:1..806 .
Chr4:73558366..73559171 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B2PMC8_GLYSO (FACT complex subunit SPT16 OS=Glycine soja GN=glysoja_032183 PE=4 SV=1)

HSP 1 Score: 498.049 bits (1281), Expect = 2.308e-165
Identity = 244/268 (91.04%), Postives = 260/268 (97.01%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 497.278 bits (1279), Expect = 4.933e-165
Identity = 243/268 (90.67%), Postives = 260/268 (97.01%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNR+NDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRLNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: B9I6M8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00590g PE=4 SV=2)

HSP 1 Score: 497.664 bits (1280), Expect = 5.505e-165
Identity = 247/268 (92.16%), Postives = 260/268 (97.01%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVF GRGRK+PG LE HVNGFR+ST+R++ERVD+M+ NIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLW QPQF+GLDLEFDQPLRELGFHGVP+K ++FIVPTSSCLVELVETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  672 FKPIRLTDLWIRPVFTGRGRKLPGALEAHVNGFRFSTSRSEERVDIMFSNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWSQPQFSGLDLEFDQPLRELGFHGVPHKVTSFIVPTSSCLVELVETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 496.508 bits (1277), Expect = 9.991e-165
Identity = 243/268 (90.67%), Postives = 258/268 (96.27%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER RKNKIN++FQ+FVNRVNDLWGQPQFNG DLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERQRKNKINVEFQTFVNRVNDLWGQPQFNGFDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A022PYU2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001381mg PE=4 SV=1)

HSP 1 Score: 488.419 bits (1256), Expect = 3.678e-164
Identity = 237/268 (88.43%), Postives = 259/268 (96.64%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRK+ GTLE H NGFRYST+R+DERVD+M+ N+KHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQT+GGGKRSAYDPDEIEEEQRERDRKNKI+MDFQ+FVNRVNDLWGQPQF   DLEFDQPLRELGFHGVP+K+SAFIVPTSSCLVEL+ETPF+V++L+EIEIVNLERVGLGQKNFDMTIVFKDFK+DV+RIDSIP +SLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDP+
Sbjct:  433 FKPIRLSDLWIRPVFGGRGRKLSGTLEAHSNGFRYSTSRSDERVDIMFANVKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKISMDFQNFVNRVNDLWGQPQFKSFDLEFDQPLRELGFHGVPHKSSAFIVPTSSCLVELIETPFVVITLAEIEIVNLERVGLGQKNFDMTIVFKDFKRDVMRIDSIPQSSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPK 700          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASPOR (FACT complex subunit spt16 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt16 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.869e-67
Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2
Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P+RLPD+++RP   G+  ++PG +E H NG RY +   +E VDV++ N+KH FFQP   E+I L+H HL   IM+G +KT+DVQFY E  ++     G +R  +     +E E EQ ER R+  ++ +F++F  ++ D  G+ +  G+D+  D P RE+GF GVP +++  I PT+  LV+L E PFLV++L+EIEI +LERV  G KNFD+  VFKDF +  + +++IP  SL+G+K+WLD+ DI + E  LNLNW  I+KT+  DP
Sbjct:  682 RPVRLPDVYLRPPLDGK--RVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDVQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDFHRPPVHVNTIPVESLEGVKDWLDSVDIAFTEGPLNLNWTTIMKTVVSDP 943          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DICDI (FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 6.610e-67
Identity = 121/264 (45.83%), Postives = 174/264 (65.91%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADER--VDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799
            RLP++  RP   G  R I G LE H NG R++ T   +R  +DV+Y NIKHA +Q A++E + ++HFHLH+ +M+G KKTKDVQFY+E+ ++ Q+L    R     DE EEE+RER  K KIN DF++F+ RV ++  +P      LEFD P RELGF+GVP  ++ FI P+  CL+ ++E PF V++L ++EI   ER     KNFD++ VFKD+ +  +RI  IP    + +KEWLD+ +IK+Y+S  N NW++I+ TI  D
Sbjct:  676 RLPEVHARPTLSGARRTI-GILEAHENGIRFNPTSTKDRTPIDVLYKNIKHAIYQQADQESMAVIHFHLHDALMIGKKKTKDVQFYIEISEMSQSLDVSSR---FNDEEEEERRERALKEKINNDFKTFIKRVEEIAPEP-----GLEFDVPYRELGFYGVPNVSTVFIQPSVHCLLSILEPPFFVLTLDDVEIACFERAIRSLKNFDLSFVFKDYNRPPIRISVIPRNYFETVKEWLDSFNIKFYQSERNYNWKRIMDTIKSD 930          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASPFU (FACT complex subunit spt16 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt16 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 7.145e-67
Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2
Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P++LPD+++RP   G+  ++PG +E H NG RY +   +E VDV++ N+KH FFQP   E+I L+H HL   IM+G +KT+DVQFY E  ++     G +R  +     +E E EQ ER R+  ++ +F++F  ++ D  G+ +  G+D+  D P RE+GF GVP +++  I PT+  LV+L E PFLV++L+EIEI +LERV  G KNFD+  VFKDF +  + I++IP  SL+G+K+WLD+ DI + E  LNLNW  I+KT+  DP
Sbjct:  660 RPVKLPDVYLRPPLDGK--RVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDVQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVESLEGVKDWLDSVDIAFTEGPLNLNWTTIMKTVVSDP 921          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNB (FACT complex subunit SPT16 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 8.714e-67
Identity = 124/269 (46.10%), Postives = 170/269 (63.20%), Query Frame = 2
Query:    8 PIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVV-QTLGGGKRSAYXXXXXXXXXXXXXXKNKINMD--FQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            P  L +++ RP  G  G+K  G +E H NG R+       ++D+++ NIKH FFQP+EKE+I ++H HL   IM+G KKT DVQFY EV D+     GG KR A   DE E EQ + DRK +  +D  F  F  R+       QF   +LE D P RELGF+GVP+K+   ++PT++CL+ + E PF V++LSE+EIV+LERV  G KNFDM  V +D KK  + I+SIP   LD +KEWLD+ D+   E  +NL+W  I+KT+ +DP 
Sbjct:  668 PYVLKNVFPRP--GPEGKKTDGNVEIHQNGIRFRPDGPASKIDILFSNIKHLFFQPSEKELIVIIHVHLKAPIMLGKKKTSDVQFYREVADMSFDETGGKKRRARYGDEDEIEQEQEDRKRRAELDKLFHDFARRIETAAQAQQF---ELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLSEVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWLDSCDVPISEGPVNLSWPAIMKTVNEDPH 931          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNJ (FACT complex subunit SPT16 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 9.818e-67
Identity = 124/269 (46.10%), Postives = 170/269 (63.20%), Query Frame = 2
Query:    8 PIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVV-QTLGGGKRSAYXXXXXXXXXXXXXXKNKINMD--FQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            P  L +++ RP  G  G+K  G +E H NG R+       ++D+++ NIKH FFQP+EKE+I ++H HL   IM+G KKT DVQFY EV D+     GG KR A   DE E EQ + DRK +  +D  F  F  R+       QF   +LE D P RELGF+GVP+K+   ++PT++CL+ + E PF V++LSE+EIV+LERV  G KNFDM  V +D KK  + I+SIP   LD +KEWLD+ D+   E  +NL+W  I+KT+ +DP 
Sbjct:  668 PYVLKNVFPRP--GPEGKKTDGNVEIHQNGIRFRPDGPASKIDILFSNIKHLFFQPSEKELIVIIHVHLKAPIMLGKKKTSDVQFYREVADMSFDETGGKKRRARYGDEDEIEQEQEDRKRRAELDKLFHDFARRIETAAQAQQF---ELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLSEVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWLDSCDVPISEGPVNLSWPAIMKTVNEDPH 931          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_YARLI (FACT complex subunit SPT16 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 5.570e-66
Identity = 118/271 (43.54%), Postives = 179/271 (66.05%), Query Frame = 2
Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +P++L  +++RP     G+++ GTLE H NG RY S  R+D ++DV++ NIKH FFQP E E+I  +H HL N I++G KKT DVQFY E  D+     G ++  Y     DE+E EQ ER R+ +++ +F++F  ++++   +       ++ D P RELGFHGVP++++  + P++ CLV+L++TPF V++L EIE+ +LERV  G KNFD+  V+KDF + V  I+SIP   LD +K+WL+  +I Y E  +NLNW  I+KT+  DPQ
Sbjct:  658 RPLKLDAVFVRP--APDGKRVAGTLEIHQNGLRYVSPIRSDHKIDVLFDNIKHLFFQPTEGELIVCIHAHLKNPILIGKKKTWDVQFYREASDMAFDETGNRKRKYRYGDEDELEAEQEERRRRLQLDKEFKAFSEKISEASDRK------VDVDTPFRELGFHGVPFRSNVLLQPSADCLVQLIDTPFSVITLGEIELAHLERVQFGLKNFDLVFVYKDFNRPVTHINSIPVDQLDAVKDWLNEVEIPYSEGPVNLNWGSIMKTVVADPQ 920          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_GIBZE (FACT complex subunit SPT16 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.770e-65
Identity = 122/270 (45.19%), Postives = 179/270 (66.30%), Query Frame = 2
Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKK-TKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799
            +P  L +++IRP     G+++PG +E H NG RY S   A  RVDV++ N+KH FFQP + E+I ++H HL + I+VGNKK TKDVQFY E  D+     G ++  Y     DE E EQ ER R+ +++  FQ F  ++ +  G+ +     +E D P+RELGFHGVP++++ F+ PT+ CL+++VE PF+V+++ E+EI +LERV  G KNFDM  VFKDF +    +++IP   LD +K++LD++DI Y E  LNLNW  I+KT+T D
Sbjct:  667 RPAVLDNVYIRPAM--EGKRVPGKVEIHQNGIRYISPLNAQHRVDVLFSNVKHLFFQPCQHELIVIIHIHLKDPIIVGNKKKTKDVQFYREATDIQFDETGNRKRKYRYGDEDEFEAEQEERRRRAELDRLFQGFAQKIAEA-GRNE----GIEVDMPIRELGFHGVPFRSNVFVQPTTDCLIQVVEPPFMVITIEEVEIAHLERVQFGLKNFDMVFVFKDFTRAPYHVNTIPVEFLDQVKDYLDSSDIAYTEGPLNLNWPTIMKTVTAD 929          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_USTMA (FACT complex subunit SPT16 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT16 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.042e-64
Identity = 115/266 (43.23%), Postives = 176/266 (66.17%), Query Frame = 2
Query:   17 LPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTT-RADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXX---XXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            LP+++ RP     G+++PG L  H NG R+S+  R D+++D+++ N+KH FFQP +KE+I ++H HL + IM+G +K KD+QFY E  DV     G ++  Y     DEIE EQ ER R++++N +F+ F  R+       + +   +  D P RELGF+GVP++ +  + PT+ CLV L + PFLV++L+++EIV+LERV  G ++FDM  VF DF +  + + SIP+TSLD +K+WLD+ DI   E  +NLNW  I+KT+ +DP
Sbjct:  667 LPEVFPRPAM--EGKRVPGDLTIHQNGLRFSSPLRPDQKIDLLFSNMKHLFFQPCDKELIVIVHIHLKSPIMIGKRKAKDIQFYREASDVQFDETGNRKRKYRSGDEDEIELEQEERRRRSQLNKEFKVFAERI------AEASEGRVSVDVPYRELGFNGVPFRTNVLLQPTTDCLVHLTDPPFLVITLTDVEIVHLERVQFGLQSFDMVFVFSDFSRAPMHVTSIPTTSLDDVKQWLDSVDICVTEGAVNLNWGAIMKTVNEDP 924          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DROME (FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.785e-64
Identity = 120/264 (45.45%), Postives = 171/264 (64.77%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP      +++ G+LE H NGFRY + R D +VD++Y NIK AFFQP + EMI LLHFHL   IM G KK  DVQFY EV ++   LG  +   +D D++  EQ ER+ ++K+   F+SF  +V  +          +EFD P RELGF G P++++  + PTS  LV L E P  V++L ++E+V+ ERV    +NFDM  VFK++ K V  +++IP   LD +KEWL++ DI+Y E   +LNW++I+KTITDDP+
Sbjct:  667 KLKDLYIRPNI--VTKRMTGSLEAHSNGFRYISVRGD-KVDILYNNIKSAFFQPCDGEMIILLHFHLKYAIMFGKKKHVDVQFYTEVGEITTDLGKHQH-MHDRDDLAAEQAERELRHKLKTAFKSFCEKVETMTKSV------VEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFERVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWLNSCDIRYSEGVQSLNWQKIMKTITDDPE 920          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_DEBHA (FACT complex subunit SPT16 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SPT16 PE=3 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.596e-63
Identity = 119/267 (44.57%), Postives = 173/267 (64.79%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +L  ++IRP      +KI G L+ H NG RY S+ R D++VD+++ NIKH FFQ  + E+I ++H HL N IM+G KKT DVQFY E  D+     GG++  Y     DE+++EQ ER RK  ++ +F++F   ++D       +G+ ++ D P RELGF GVP+++S   +PT  CL++L++ P+LVV+L EIEI +LERV  G KNFD+  VFKDF K V+ I++IP   L+ +K WL   DI   E ++NLNW  I+KT+  DP
Sbjct:  683 KLDQVFIRP--QPDTKKIGGVLQIHENGLRYQSSIRMDQKVDILFSNIKHLFFQSCKDELIVIIHCHLKNPIMIGKKKTHDVQFYREASDMAFDETGGRKRRYRYGDEDELQQEQEERRRKALLDKEFKAFAELISD-----SSSGM-VDLDIPFRELGFSGVPFRSSVLCMPTRDCLIQLIDPPYLVVTLEEIEIAHLERVQFGLKNFDLVFVFKDFNKSVVHINTIPMELLEDVKSWLTDVDIPISEGQMNLNWATIMKTVQSDP 941          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2PMC8_GLYSO2.308e-16591.04FACT complex subunit SPT16 OS=Glycine soja GN=glys... [more]
K7MPW8_SOYBN4.933e-16590.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9I6M8_POPTR5.505e-16592.16Uncharacterized protein OS=Populus trichocarpa GN=... [more]
K7MPW9_SOYBN9.991e-16590.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A022PYU2_ERYGU3.678e-16488.43Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SPT16_ASPOR5.869e-6744.61FACT complex subunit spt16 OS=Aspergillus oryzae (... [more]
SPT16_DICDI6.610e-6745.83FACT complex subunit SPT16 OS=Dictyostelium discoi... [more]
SPT16_ASPFU7.145e-6744.61FACT complex subunit spt16 OS=Neosartorya fumigata... [more]
SPT16_CRYNB8.714e-6746.10FACT complex subunit SPT16 OS=Cryptococcus neoform... [more]
SPT16_CRYNJ9.818e-6746.10FACT complex subunit SPT16 OS=Cryptococcus neoform... [more]
SPT16_YARLI5.570e-6643.54FACT complex subunit SPT16 OS=Yarrowia lipolytica ... [more]
SPT16_GIBZE1.770e-6545.19FACT complex subunit SPT16 OS=Gibberella zeae (str... [more]
SPT16_USTMA3.042e-6443.23FACT complex subunit SPT16 OS=Ustilago maydis (str... [more]
SPT16_DROME5.785e-6445.45FACT complex subunit spt16 OS=Drosophila melanogas... [more]
SPT16_DEBHA5.596e-6344.57FACT complex subunit SPT16 OS=Debaryomyces hanseni... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013719Domain of unknown function DUF1747SMARTSM01287Rtt106_2coord: 114..204
e-value: 2.7E-36
score: 136.6
IPR013719Domain of unknown function DUF1747PFAMPF08512Rtt106coord: 121..202
e-value: 1.0E-17
score: 64.2
NoneNo IPR availablePANTHERPTHR13980CDC68 RELATEDcoord: 1..222

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bp
GTTCAAGCCTATTAGGCTACCTGACCTTTGGATTCGTCCTGTTTTTGGTG
GTCGTGGGAGGAAGATTCCAGGAACACTTGAAACTCATGTTAATGGTTTT
CGATATTCTACTACTAGAGCTGATGAGCGTGTTGATGTTATGTATGGGAA
CATAAAGCATGCATTCTTCCAGCCTGCAGAGAAAGAAATGATCACTCTCC
TTCACTTTCATCTGCACAATCACATAATGGTGGGAAACAAAAAAACTAAA
GATGTGCAATTTTATGTTGAGGTTATGGATGTTGTCCAGACATTGGGAGG
GGGAAAGAGGTCTGCTTATGACCCTGATGAGATTGAAGAAGAGCAAAGGG
AGAGGGATAGGAAGAATAAGATCAACATGGATTTTCAGAGTTTTGTGAAC
CGGGTAAATGATCTATGGGGGCAGCCTCAGTTCAATGGTCTTGATCTTGA
GTTTGATCAACCGCTTAGAGAACTTGGCTTCCATGGGGTCCCCTACAAAG
CCTCCGCTTTTATTGTGCCAACGTCAAGCTGTTTAGTTGAGTTGGTAGAG
ACTCCTTTCCTTGTGGTCTCCTTAAGCGAGATTGAGATCGTGAACCTGGA
GAGGGTTGGCCTTGGGCAGAAAAATTTTGACATGACCATAGTGTTCAAGG
ACTTCAAGAAAGATGTACTAAGGATTGATTCCATCCCTTCAACCTCACTT
GATGGCATCAAGGAATGGCTTGATACAACAGACATAAAGTATTACGAGAG
CAGGCTGAATCTGAACTGGCGGCAGATTCTGAAGACAATCACTGACGATC
CACAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013719RTT106/SPT16-like_middle_dom