g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011262
Unique Nameg.arboreum_cottongen_reftransV1_0011262
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length806
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0011262:1..806 .
Chr4:73558366..73559171 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B2PMC8_GLYSO (FACT complex subunit SPT16 OS=Glycine soja GN=glysoja_032183 PE=4 SV=1)

HSP 1 Score: 498.049 bits (1281), Expect = 2.308e-165
Identity = 244/268 (91.04%), Postives = 260/268 (97.01%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 497.278 bits (1279), Expect = 4.933e-165
Identity = 243/268 (90.67%), Postives = 260/268 (97.01%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNR+NDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRLNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: B9I6M8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00590g PE=4 SV=2)

HSP 1 Score: 497.664 bits (1280), Expect = 5.505e-165
Identity = 247/268 (92.16%), Postives = 260/268 (97.01%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVF GRGRK+PG LE HVNGFR+ST+R++ERVD+M+ NIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLW QPQF+GLDLEFDQPLRELGFHGVP+K ++FIVPTSSCLVELVETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  672 FKPIRLTDLWIRPVFTGRGRKLPGALEAHVNGFRFSTSRSEERVDIMFSNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWSQPQFSGLDLEFDQPLRELGFHGVPHKVTSFIVPTSSCLVELVETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 496.508 bits (1277), Expect = 9.991e-165
Identity = 243/268 (90.67%), Postives = 258/268 (96.27%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER RKNKIN++FQ+FVNRVNDLWGQPQFNG DLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERQRKNKINVEFQTFVNRVNDLWGQPQFNGFDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A022PYU2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001381mg PE=4 SV=1)

HSP 1 Score: 488.419 bits (1256), Expect = 3.678e-164
Identity = 237/268 (88.43%), Postives = 259/268 (96.64%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRK+ GTLE H NGFRYST+R+DERVD+M+ N+KHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQT+GGGKRSAYDPDEIEEEQRERDRKNKI+MDFQ+FVNRVNDLWGQPQF   DLEFDQPLRELGFHGVP+K+SAFIVPTSSCLVEL+ETPF+V++L+EIEIVNLERVGLGQKNFDMTIVFKDFK+DV+RIDSIP +SLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDP+
Sbjct:  433 FKPIRLSDLWIRPVFGGRGRKLSGTLEAHSNGFRYSTSRSDERVDIMFANVKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKISMDFQNFVNRVNDLWGQPQFKSFDLEFDQPLRELGFHGVPHKSSAFIVPTSSCLVELIETPFVVITLAEIEIVNLERVGLGQKNFDMTIVFKDFKRDVMRIDSIPQSSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPK 700          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2)

HSP 1 Score: 477.248 bits (1227), Expect = 3.125e-159
Identity = 236/267 (88.39%), Postives = 252/267 (94.38%), Query Frame = 2
Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            KP+RL D+WIRP FGGRGRK+ GTLE+HVNGFRYST+RADERVD+MYGN+KHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG +RSA DPDEIEEEQRERDRKN+INMDFQ+FVN+VND W QPQF GLDLEFD PLRELGFHGVPYKASAFI+PTS+CLVEL+ETPFLVV+LSEIEIVNLERVG G KNFDM IVFKDFKKDVLRIDSIPSTSLD IKEWLDTTD+KYYESRLNLNWR ILKTI DDPQ
Sbjct:  661 KPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGNVKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQ 927          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1)

HSP 1 Score: 466.077 bits (1198), Expect = 6.150e-155
Identity = 232/268 (86.57%), Postives = 247/268 (92.16%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             K +RL D+WIRP FGGRGRK+ G LE H NGFRYST+R+DERVD+M+GNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG +RSA DPDEIEEEQRERDRKN+INMDFQ+FVN+VND W QPQF GLDLEFD PLRELGFHGVPYKASAFI+PTS+CLVEL+ETPFLVVSLSEIEIVNLERVG G KNFDM IVFKDFKKDVLRIDSIPS SLD IKEWLDTTD+KYYESRLNLNWR ILKTI DDPQ
Sbjct:  660 MKMMRLSDVWIRPAFGGRGRKLTGNLEAHFNGFRYSTSRSDERVDIMFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGSRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVSLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSASLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQ 927          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 1.156e-153
Identity = 229/268 (85.45%), Postives = 248/268 (92.54%), Query Frame = 2
Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKP+RL +LWIRP F GR +KIPGTLE H NGFRYSTTR DERVDV++ NIKHAFFQPAEKEMITLLHFHLHNHIMVG KKTKDVQFYVEVMDVVQ+LGGG+RSAYDPDEI+EEQRERDRKNKINMDF  F NRVND+W  PQF  LDLEFDQPLRELGFHGVP+K SAFI+PTSSCLVEL+E PFLVVSLSEIEIVNLERVG GQKNFDM I+FKDFKKDVLR+DS+P++SL+GIKEWLDTTDIKYYES+LNLNWRQILKTITDDPQ
Sbjct:  675 FKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDERVDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGRRSAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQ 941          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_XENLA (FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.632e-70
Identity = 126/264 (47.73%), Postives = 178/264 (67.42%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N IM G K+  DVQFY EV ++   LG   +  +D D++  EQ ER+ ++K+   F++F+ +V  L  +      DLEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+V+ ERV    KNFDM IV+K++ K V  I++IP  SLD IKEWL++ DIKY E   +LNW +I+KTI DDP+
Sbjct:  663 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGK-HQHMHDRDDLYAEQLEREMRHKLKTAFKNFIEKVESLTKE------DLEFEIPFRDLGFNGAPYRSTCLLQPTSSSLVNTTEWPPFVVTLDEVELVHFERVQFHLKNFDMVIVYKEYGKKVTMINAIPMASLDPIKEWLNSCDIKYTEGVQSLNWTKIMKTIVDDPE 916          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_HUMAN (FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.486e-70
Identity = 124/264 (46.97%), Postives = 178/264 (67.42%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N IM G K+  DVQFY EV ++   LG   +  +D D++  EQ ER+ ++K+   F++F+ +V  L  +      +LEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+++ ERV    KNFDM IV+KD+ K V  I++IP  SLD IKEWL++ D+KY E   +LNW +I+KTI DDP+
Sbjct:  661 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGK-HQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPE 914          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.073e-69
Identity = 123/264 (46.59%), Postives = 178/264 (67.42%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N +M G K+  DVQFY EV ++   LG  +   +D D++  EQ ER+ ++K+   F++F+ +V  L  +      +LEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+++ ERV    KNFDM IV+KD+ K V  I++IP  SLD IKEWL++ D+KY E   +LNW +I+KTI DDP+
Sbjct:  661 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAVMFGKKRHTDVQFYTEVGEITTDLGKHQH-MHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPE 914          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CAEBR (FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.385e-69
Identity = 131/264 (49.62%), Postives = 173/264 (65.53%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL IRP      ++I G+LE H NGFRY++ R D R+DV+Y NIKHAFFQP + EMI LLHFHL N +M G KK KDVQFY EV ++   LG       D D++  EQ+ER+ + ++N  F SF  +V+ L    QF     EFD P   LGF GVP++++  + PT+SCLV L E P  +V+LSE+E+V+ ERV L  KNFDM  +FKD+K     +  IP +S+D IKEWL T DI Y E   +LNW +++KTITDDP+
Sbjct:  660 KLKDLLIRPNI--IQKRITGSLEAHTNGFRYTSLRGD-RIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVMWGKKKYKDVQFYTEVGEITTDLGK-YHHMQDRDDMHSEQQERELRRRLNTTFNSFCEKVSRLTND-QF-----EFDSPFAGLGFFGVPFRSATTLKPTASCLVNLTEWPPFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKMKTQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDDPE 913          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_SCHPO (FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt16 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.421e-68
Identity = 120/270 (44.44%), Postives = 181/270 (67.04%), Query Frame = 2
Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P  + D+++RP   G+  ++PG +E H NG RY S  R+D  +D+++ N+KH FFQP E E+I L+H HL   IMVG +KT+DVQFY EV D+     G K+  Y     DE+E+EQ ER R+ +++ +F+SF  ++       + +   +E D P REL F+GVP++++  + PT+ CLV+L +TPF V++L+EIEI +LERV  G KNFD+  +F+DF++  + I++IP   LD +KEWLD+ DI +YE  LNLNW  I+KT+ +DP
Sbjct:  659 RPAHINDVYVRPAIDGK--RLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQFYREVSDIQFDETGNKKRKYMYGDEDELEQEQEERRRRAQLDREFKSFAEKI------AEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEIEIAHLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWLDSCDICFYEGPLNLNWTTIMKTVNEDP 920          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CAEEL (FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 4.008e-68
Identity = 130/262 (49.62%), Postives = 172/262 (65.65%), Query Frame = 2
Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799
            +L DL IRP      ++I G+LE H NGFRY++ R D R+DV+Y NIKHAFFQP + EMI LLHFHL N ++ G KK KDVQFY EV ++   LG       D D+++ EQ+ER+ + ++N  F SF  +V+ L    QF     EFD P   LGF GVPY+++  + PT+SCLV L E P  +V+LSE+E+V+ ERV L  KNFDM  +FKD+K     +  IP +S+D IKEWL T DI Y E   +LNW +++KTITDD
Sbjct:  661 KLKDLLIRPNI--IQKRITGSLEAHTNGFRYTSLRGD-RIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVLWGKKKYKDVQFYTEVGEITTDLGK-YHHMQDRDDMQSEQQEREMRRRLNAAFNSFCEKVSRLTND-QF-----EFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDD 912          
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_EMENI (FACT complex subunit spt16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spt16 PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 4.716e-67
Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2
Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P++LPD+++RP   G+  ++PG +E H NG RY +   +E VDV++ N+KH FFQP   E+I L+H HL   IM+G +KT+D+QFY E  ++     G +R  +     +E E EQ ER R+  ++ +F++F  ++ D  G+ +  G+D+  D P RE+GF GVP +++  I PT+  LV+L E PFLV+SL+EIEI +LERV  G KNFD+  VFKDF +  + I++IP  +L+G+K+WLD+ DI Y E  LNLNW  I+KT+  DP
Sbjct:  661 RPVKLPDVYLRPPLDGK--RVPGEVEIHQNGLRYVSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDIQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVISLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVENLEGVKDWLDSVDIAYTEGPLNLNWTTIMKTVVSDP 922          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2PMC8_GLYSO2.308e-16591.04FACT complex subunit SPT16 OS=Glycine soja GN=glys... [more]
K7MPW8_SOYBN4.933e-16590.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9I6M8_POPTR5.505e-16592.16Uncharacterized protein OS=Populus trichocarpa GN=... [more]
K7MPW9_SOYBN9.991e-16590.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A022PYU2_ERYGU3.678e-16488.43Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SPT16_ORYSJ3.125e-15988.39FACT complex subunit SPT16 OS=Oryza sativa subsp. ... [more]
SPT16_MAIZE6.150e-15586.57FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE... [more]
SPT16_ARATH1.156e-15385.45FACT complex subunit SPT16 OS=Arabidopsis thaliana... [more]
SP16H_XENLA4.632e-7047.73FACT complex subunit SPT16 OS=Xenopus laevis GN=su... [more]
SP16H_HUMAN6.486e-7046.97FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT... [more]
SP16H_MOUSE1.073e-6946.59FACT complex subunit SPT16 OS=Mus musculus GN=Supt... [more]
SPT16_CAEBR2.385e-6949.62FACT complex subunit spt-16 OS=Caenorhabditis brig... [more]
SPT16_SCHPO2.421e-6844.44FACT complex subunit spt16 OS=Schizosaccharomyces ... [more]
SPT16_CAEEL4.008e-6849.62FACT complex subunit spt-16 OS=Caenorhabditis eleg... [more]
SPT16_EMENI4.716e-6744.61FACT complex subunit spt16 OS=Emericella nidulans ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013719Domain of unknown function DUF1747SMARTSM01287Rtt106_2coord: 114..204
e-value: 2.7E-36
score: 136.6
IPR013719Domain of unknown function DUF1747PFAMPF08512Rtt106coord: 121..202
e-value: 1.0E-17
score: 64.2
NoneNo IPR availablePANTHERPTHR13980CDC68 RELATEDcoord: 1..222

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bp
GTTCAAGCCTATTAGGCTACCTGACCTTTGGATTCGTCCTGTTTTTGGTG
GTCGTGGGAGGAAGATTCCAGGAACACTTGAAACTCATGTTAATGGTTTT
CGATATTCTACTACTAGAGCTGATGAGCGTGTTGATGTTATGTATGGGAA
CATAAAGCATGCATTCTTCCAGCCTGCAGAGAAAGAAATGATCACTCTCC
TTCACTTTCATCTGCACAATCACATAATGGTGGGAAACAAAAAAACTAAA
GATGTGCAATTTTATGTTGAGGTTATGGATGTTGTCCAGACATTGGGAGG
GGGAAAGAGGTCTGCTTATGACCCTGATGAGATTGAAGAAGAGCAAAGGG
AGAGGGATAGGAAGAATAAGATCAACATGGATTTTCAGAGTTTTGTGAAC
CGGGTAAATGATCTATGGGGGCAGCCTCAGTTCAATGGTCTTGATCTTGA
GTTTGATCAACCGCTTAGAGAACTTGGCTTCCATGGGGTCCCCTACAAAG
CCTCCGCTTTTATTGTGCCAACGTCAAGCTGTTTAGTTGAGTTGGTAGAG
ACTCCTTTCCTTGTGGTCTCCTTAAGCGAGATTGAGATCGTGAACCTGGA
GAGGGTTGGCCTTGGGCAGAAAAATTTTGACATGACCATAGTGTTCAAGG
ACTTCAAGAAAGATGTACTAAGGATTGATTCCATCCCTTCAACCTCACTT
GATGGCATCAAGGAATGGCTTGATACAACAGACATAAAGTATTACGAGAG
CAGGCTGAATCTGAACTGGCGGCAGATTCTGAAGACAATCACTGACGATC
CACAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013719RTT106/SPT16-like_middle_dom