g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B2PMC8_GLYSO (FACT complex subunit SPT16 OS=Glycine soja GN=glysoja_032183 PE=4 SV=1) HSP 1 Score: 498.049 bits (1281), Expect = 2.308e-165 Identity = 244/268 (91.04%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 497.278 bits (1279), Expect = 4.933e-165 Identity = 243/268 (90.67%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKH+FFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNR+NDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHSFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRLNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: B9I6M8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00590g PE=4 SV=2) HSP 1 Score: 497.664 bits (1280), Expect = 5.505e-165 Identity = 247/268 (92.16%), Postives = 260/268 (97.01%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRPVF GRGRK+PG LE HVNGFR+ST+R++ERVD+M+ NIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLW QPQF+GLDLEFDQPLRELGFHGVP+K ++FIVPTSSCLVELVETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLTDLWIRPVFTGRGRKLPGALEAHVNGFRFSTSRSEERVDIMFSNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWSQPQFSGLDLEFDQPLRELGFHGVPHKVTSFIVPTSSCLVELVETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: K7MPW9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 496.508 bits (1277), Expect = 9.991e-165 Identity = 243/268 (90.67%), Postives = 258/268 (96.27%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER RKNKIN++FQ+FVNRVNDLWGQPQFNG DLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 675 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERQRKNKINVEFQTFVNRVNDLWGQPQFNGFDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A022PYU2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001381mg PE=4 SV=1) HSP 1 Score: 488.419 bits (1256), Expect = 3.678e-164 Identity = 237/268 (88.43%), Postives = 259/268 (96.64%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRPVFGGRGRK+ GTLE H NGFRYST+R+DERVD+M+ N+KHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQT+GGGKRSAYDPDEIEEEQRERDRKNKI+MDFQ+FVNRVNDLWGQPQF DLEFDQPLRELGFHGVP+K+SAFIVPTSSCLVEL+ETPF+V++L+EIEIVNLERVGLGQKNFDMTIVFKDFK+DV+RIDSIP +SLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDP+ Sbjct: 433 FKPIRLSDLWIRPVFGGRGRKLSGTLEAHSNGFRYSTSRSDERVDIMFANVKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKISMDFQNFVNRVNDLWGQPQFKSFDLEFDQPLRELGFHGVPHKSSAFIVPTSSCLVELIETPFVVITLAEIEIVNLERVGLGQKNFDMTIVFKDFKRDVMRIDSIPQSSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPK 700
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2) HSP 1 Score: 477.248 bits (1227), Expect = 3.125e-159 Identity = 236/267 (88.39%), Postives = 252/267 (94.38%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 KP+RL D+WIRP FGGRGRK+ GTLE+HVNGFRYST+RADERVD+MYGN+KHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG +RSA DPDEIEEEQRERDRKN+INMDFQ+FVN+VND W QPQF GLDLEFD PLRELGFHGVPYKASAFI+PTS+CLVEL+ETPFLVV+LSEIEIVNLERVG G KNFDM IVFKDFKKDVLRIDSIPSTSLD IKEWLDTTD+KYYESRLNLNWR ILKTI DDPQ Sbjct: 661 KPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGNVKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQ 927
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1) HSP 1 Score: 466.077 bits (1198), Expect = 6.150e-155 Identity = 232/268 (86.57%), Postives = 247/268 (92.16%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 K +RL D+WIRP FGGRGRK+ G LE H NGFRYST+R+DERVD+M+GNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG +RSA DPDEIEEEQRERDRKN+INMDFQ+FVN+VND W QPQF GLDLEFD PLRELGFHGVPYKASAFI+PTS+CLVEL+ETPFLVVSLSEIEIVNLERVG G KNFDM IVFKDFKKDVLRIDSIPS SLD IKEWLDTTD+KYYESRLNLNWR ILKTI DDPQ Sbjct: 660 MKMMRLSDVWIRPAFGGRGRKLTGNLEAHFNGFRYSTSRSDERVDIMFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGSRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVSLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSASLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQ 927
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1) HSP 1 Score: 462.996 bits (1190), Expect = 1.156e-153 Identity = 229/268 (85.45%), Postives = 248/268 (92.54%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKP+RL +LWIRP F GR +KIPGTLE H NGFRYSTTR DERVDV++ NIKHAFFQPAEKEMITLLHFHLHNHIMVG KKTKDVQFYVEVMDVVQ+LGGG+RSAYDPDEI+EEQRERDRKNKINMDF F NRVND+W PQF LDLEFDQPLRELGFHGVP+K SAFI+PTSSCLVEL+E PFLVVSLSEIEIVNLERVG GQKNFDM I+FKDFKKDVLR+DS+P++SL+GIKEWLDTTDIKYYES+LNLNWRQILKTITDDPQ Sbjct: 675 FKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDERVDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGRRSAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQ 941
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_XENLA (FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2) HSP 1 Score: 238.039 bits (606), Expect = 4.632e-70 Identity = 126/264 (47.73%), Postives = 178/264 (67.42%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 +L DL+IRP + ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N IM G K+ DVQFY EV ++ LG + +D D++ EQ ER+ ++K+ F++F+ +V L + DLEF+ P R+LGF+G PY+++ + PTSS LV E P VV+L E+E+V+ ERV KNFDM IV+K++ K V I++IP SLD IKEWL++ DIKY E +LNW +I+KTI DDP+ Sbjct: 663 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGK-HQHMHDRDDLYAEQLEREMRHKLKTAFKNFIEKVESLTKE------DLEFEIPFRDLGFNGAPYRSTCLLQPTSSSLVNTTEWPPFVVTLDEVELVHFERVQFHLKNFDMVIVYKEYGKKVTMINAIPMASLDPIKEWLNSCDIKYTEGVQSLNWTKIMKTIVDDPE 916
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_HUMAN (FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 6.486e-70 Identity = 124/264 (46.97%), Postives = 178/264 (67.42%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 +L DL+IRP + ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N IM G K+ DVQFY EV ++ LG + +D D++ EQ ER+ ++K+ F++F+ +V L + +LEF+ P R+LGF+G PY+++ + PTSS LV E P VV+L E+E+++ ERV KNFDM IV+KD+ K V I++IP SLD IKEWL++ D+KY E +LNW +I+KTI DDP+ Sbjct: 661 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGK-HQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPE 914
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2) HSP 1 Score: 236.884 bits (603), Expect = 1.073e-69 Identity = 123/264 (46.59%), Postives = 178/264 (67.42%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 +L DL+IRP + ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N +M G K+ DVQFY EV ++ LG + +D D++ EQ ER+ ++K+ F++F+ +V L + +LEF+ P R+LGF+G PY+++ + PTSS LV E P VV+L E+E+++ ERV KNFDM IV+KD+ K V I++IP SLD IKEWL++ D+KY E +LNW +I+KTI DDP+ Sbjct: 661 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAVMFGKKRHTDVQFYTEVGEITTDLGKHQH-MHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPE 914
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CAEBR (FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 2.385e-69 Identity = 131/264 (49.62%), Postives = 173/264 (65.53%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 +L DL IRP ++I G+LE H NGFRY++ R D R+DV+Y NIKHAFFQP + EMI LLHFHL N +M G KK KDVQFY EV ++ LG D D++ EQ+ER+ + ++N F SF +V+ L QF EFD P LGF GVP++++ + PT+SCLV L E P +V+LSE+E+V+ ERV L KNFDM +FKD+K + IP +S+D IKEWL T DI Y E +LNW +++KTITDDP+ Sbjct: 660 KLKDLLIRPNI--IQKRITGSLEAHTNGFRYTSLRGD-RIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVMWGKKKYKDVQFYTEVGEITTDLGK-YHHMQDRDDMHSEQQERELRRRLNTTFNSFCEKVSRLTND-QF-----EFDSPFAGLGFFGVPFRSATTLKPTASCLVNLTEWPPFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKMKTQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDDPE 913
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_SCHPO (FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt16 PE=1 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 2.421e-68 Identity = 120/270 (44.44%), Postives = 181/270 (67.04%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 +P + D+++RP G+ ++PG +E H NG RY S R+D +D+++ N+KH FFQP E E+I L+H HL IMVG +KT+DVQFY EV D+ G K+ Y DE+E+EQ ER R+ +++ +F+SF ++ + + +E D P REL F+GVP++++ + PT+ CLV+L +TPF V++L+EIEI +LERV G KNFD+ +F+DF++ + I++IP LD +KEWLD+ DI +YE LNLNW I+KT+ +DP Sbjct: 659 RPAHINDVYVRPAIDGK--RLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQFYREVSDIQFDETGNKKRKYMYGDEDELEQEQEERRRRAQLDREFKSFAEKI------AEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEIEIAHLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWLDSCDICFYEGPLNLNWTTIMKTVNEDP 920
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CAEEL (FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=3 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 4.008e-68 Identity = 130/262 (49.62%), Postives = 172/262 (65.65%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799 +L DL IRP ++I G+LE H NGFRY++ R D R+DV+Y NIKHAFFQP + EMI LLHFHL N ++ G KK KDVQFY EV ++ LG D D+++ EQ+ER+ + ++N F SF +V+ L QF EFD P LGF GVPY+++ + PT+SCLV L E P +V+LSE+E+V+ ERV L KNFDM +FKD+K + IP +S+D IKEWL T DI Y E +LNW +++KTITDD Sbjct: 661 KLKDLLIRPNI--IQKRITGSLEAHTNGFRYTSLRGD-RIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVLWGKKKYKDVQFYTEVGEITTDLGK-YHHMQDRDDMQSEQQEREMRRRLNAAFNSFCEKVSRLTND-QF-----EFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDD 912
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_EMENI (FACT complex subunit spt16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spt16 PE=3 SV=2) HSP 1 Score: 229.18 bits (583), Expect = 4.716e-67 Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 +P++LPD+++RP G+ ++PG +E H NG RY + +E VDV++ N+KH FFQP E+I L+H HL IM+G +KT+D+QFY E ++ G +R + +E E EQ ER R+ ++ +F++F ++ D G+ + G+D+ D P RE+GF GVP +++ I PT+ LV+L E PFLV+SL+EIEI +LERV G KNFD+ VFKDF + + I++IP +L+G+K+WLD+ DI Y E LNLNW I+KT+ DP Sbjct: 661 RPVKLPDVYLRPPLDGK--RVPGEVEIHQNGLRYVSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDIQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVISLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVENLEGVKDWLDSVDIAYTEGPLNLNWTTIMKTVVSDP 922 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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