g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A067E286_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001503mg PE=4 SV=1) HSP 1 Score: 498.434 bits (1282), Expect = 4.131e-168 Identity = 247/268 (92.16%), Postives = 262/268 (97.76%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPI+L DLWIRPVFGGRGRKIPGTLE H+NGFR++T+R +ERVD+M+GNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRER RKNKINMDFQSFVNRVNDLWGQP+FNGLDLEFDQPLR+LGFHGVP+KASAFIVPTSSCLVEL+ETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPS+SLD IKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 434 FKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 701
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: U5GCX0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s00690g PE=4 SV=1) HSP 1 Score: 504.597 bits (1298), Expect = 8.683e-168 Identity = 249/268 (92.91%), Postives = 263/268 (98.13%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRPVFGGRGRK+PG+LE HVNGFRYST+RA+ERVD+M+ NIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRER+RKNKINMDFQSFVNRVNDLW QPQF+GLDLEFDQPLRELGFHGVP+K ++FIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPST+LDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 672 FKPIRLTDLWIRPVFGGRGRKLPGSLEAHVNGFRYSTSRAEERVDIMFANIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERERKNKINMDFQSFVNRVNDLWAQPQFSGLDLEFDQPLRELGFHGVPHKVTSFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: G7J7Y6_MEDTR (Global transcription factor OS=Medicago truncatula GN=MTR_3g064470 PE=4 SV=1) HSP 1 Score: 501.901 bits (1291), Expect = 8.510e-167 Identity = 247/268 (92.16%), Postives = 261/268 (97.39%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRLPDLWIRP FGGRGRKIPGTLE HVNGFRYSTTR+DERVDVM+ NIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER+RKNKIN++FQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 674 FKPIRLPDLWIRPPFGGRGRKIPGTLEAHVNGFRYSTTRSDERVDVMFANIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERERKNKINVEFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0A0KP38_CUCSA (Global transcription factor group OS=Cucumis sativus GN=Csa_6G525380 PE=4 SV=1) HSP 1 Score: 501.13 bits (1289), Expect = 2.200e-166 Identity = 245/268 (91.42%), Postives = 262/268 (97.76%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRLP+LWIRP FGGRGRK+PGTLE H+NGFRY+TTR++ERVD+M+GN+KHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQT+GGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYK+SAFIVPTS+CLVEL+ETPFLVV+L EIEIVNLERVG GQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYES+LNLNWRQILKTIT+DPQ Sbjct: 682 FKPIRLPELWIRPAFGGRGRKLPGTLEAHLNGFRYATTRSEERVDIMFGNVKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKSSAFIVPTSTCLVELIETPFLVVTLGEIEIVNLERVGFGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESKLNLNWRQILKTITEDPQ 949
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A067DRA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001503mg PE=4 SV=1) HSP 1 Score: 500.745 bits (1288), Expect = 2.396e-166 Identity = 247/268 (92.16%), Postives = 262/268 (97.76%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPI+L DLWIRPVFGGRGRKIPGTLE H+NGFR++T+R +ERVD+M+GNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRER RKNKINMDFQSFVNRVNDLWGQP+FNGLDLEFDQPLR+LGFHGVP+KASAFIVPTSSCLVEL+ETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPS+SLD IKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 674 FKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: V7BLV8_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_006G0864001g PE=4 SV=1) HSP 1 Score: 479.559 bits (1233), Expect = 2.964e-166 Identity = 239/266 (89.85%), Postives = 255/266 (95.86%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DER D+++GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNRVNDLWGQ QFNGL+LEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD Sbjct: 45 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERGDILFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRVNDLWGQAQFNGLELEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 310
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: V4SWE1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010953mg PE=4 SV=1) HSP 1 Score: 500.36 bits (1287), Expect = 3.164e-166 Identity = 247/268 (92.16%), Postives = 262/268 (97.76%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPI+L DLWIRPVFGGRGRKIPGTLE H+NGFR++T+R +ERVD+M+GNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRER RKNKINMDFQSFVNRVNDLWGQP+FNGLDLEFDQPLR+LGFHGVP+KASAFIVPTSSCLVEL+ETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPS+SLD IKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 674 FKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A067KWM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24615 PE=4 SV=1) HSP 1 Score: 499.59 bits (1285), Expect = 4.973e-166 Identity = 247/268 (92.16%), Postives = 259/268 (96.64%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRK+PG LE HVNGFR+ST+R DERVD+M+ NIKHAFFQPAE+EMITLLHFHLHNHIMVGNKKTKDVQFYVEVM+ VQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLW QPQFNGLDLEFDQPLRELGFHGVPYK S+FIVPTSSCLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYES+LNLNWRQILKTITDDPQ Sbjct: 661 FKPIRLSDLWIRPPFGGRGRKLPGALEAHVNGFRFSTSRPDERVDIMFANIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYVEVMETVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWSQPQFNGLDLEFDQPLRELGFHGVPYKTSSFIVPTSSCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQ 928
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: F6I4V8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00580 PE=4 SV=1) HSP 1 Score: 499.59 bits (1285), Expect = 9.475e-166 Identity = 246/268 (91.79%), Postives = 261/268 (97.39%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRK+ G+LE+H NGFRYST+R DERVD+MYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQF+VEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVP+KASAFIVPTSSCLVEL+ETPFLV++LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWR ILKTIT+DP+ Sbjct: 676 FKPIRLSDLWIRPSFGGRGRKLTGSLESHTNGFRYSTSRPDERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFFVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFKGLDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFLVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITEDPE 943
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B2PML3_GLYSO (FACT complex subunit SPT16 OS=Glycine soja GN=glysoja_032182 PE=4 SV=1) HSP 1 Score: 498.434 bits (1282), Expect = 2.052e-165 Identity = 244/268 (91.04%), Postives = 259/268 (96.64%), Query Frame = 2 Query: 2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER RKNKIN++FQ+FVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ Sbjct: 675 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERQRKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CANAL (FACT complex subunit SPT16 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPT16 PE=3 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 6.902e-63 Identity = 124/273 (45.42%), Postives = 173/273 (63.37%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-------STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 +L +++IRP +KI G L+ H NG RY S + D+RVDV++ NIKH FFQP + E+I L+H HL N IM+G +KT DVQFY E D+ GG++ Y DE+++EQ ER RK ++ +F+ F + D +G+ ++ D P RELGF GVP+++S VPT CLV+L++ P+LVV+L EIEI +LERV G KNFD+ VFKDF K V+ I++IP L+ +K WL DI E ++NLNW QI+KT+ DP Sbjct: 698 KLNNVFIRPT--PDTKKIGGVLQIHENGLRYQSQPQSQSNFKNDQRVDVLFSNIKHLFFQPCKDELIVLIHCHLKNPIMIGKRKTFDVQFYREASDMAFDETGGRKRKYRYGDEDELQQEQEERRRKALLDKEFKGFAELIAD-----SSHGM-VDLDIPFRELGFQGVPFRSSVLCVPTRDCLVQLIDPPYLVVTLEEIEIAHLERVQFGLKNFDLVFVFKDFNKPVVHINTIPVELLEDVKSWLTDVDIPISEGQMNLNWVQIMKTVLADP 962
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ASHGO (FACT complex subunit SPT16 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPT16 PE=3 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 1.651e-61 Identity = 121/272 (44.49%), Postives = 172/272 (63.24%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 RL +++RP +++PGT+ H NG RY S R D R+D+++ N+K+ FFQP + E+I ++H HL N I++G KK +DVQFY E D+ V G G+R+ DE+E+EQ ER ++ ++ +F+ F + + NGL +E D P R+LGF GVP +++ F +PT CL++LVE PFLVV+LSE+EI LERV G KNFDM V+KDF K V I++IP L+ IK WL DI Y S +NLNW I+K++ DDP Sbjct: 675 RLDQIFVRP--SPDTKRVPGTVFIHENGIRYQSPLRTDSRIDILFSNVKNLFFQPCKGELIVIIHIHLKNPILMGKKKIQDVQFYREASDMAVDETGNGRRNQMKFRRYGDEDELEQEQEERRKRAALDKEFRYFAEAIAEAS-----NGL-VEVDHPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVVNLSEVEICILERVQFGLKNFDMVFVYKDFTKPVTHINTIPIEQLEFIKSWLTDVDIPYTVSTINLNWATIMKSLQDDPH 938
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_NEUCR (FACT complex subunit ctc-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ctc-2 PE=3 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 3.747e-61 Identity = 115/268 (42.91%), Postives = 179/268 (66.79%), Query Frame = 2 Query: 5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKK-TKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTIT 793 +P L +++IRP G+++PG +E H NG RY S +RVD+++ N++H FFQP + E+I ++H HL + I++GNKK TKDVQFY E D+ G ++ Y DE E EQ ER R+ +++ F+SF ++ + G+ + +E D PLR+LGF+GVP++++ +I PT+ CL+++ E PF+V++L +IE+ +LERV G KNFD+ VFKDF + I++IP SL+ +KE+LD++DI + E LNLNW I+KT+T Sbjct: 666 RPAVLDNVFIRPAM--EGKRVPGKVEIHQNGIRYQSPLSTTQRVDILFSNVRHLFFQPCQHELIVIIHIHLKDPIIIGNKKKTKDVQFYREATDIQFDETGNRKRKYRYGDEDEFEAEQEERRRRAELDRLFKSFAEKIAEA-GRNE----GIEVDMPLRDLGFNGVPFRSNVYIQPTTECLIQITEPPFMVITLEDIEVAHLERVQFGLKNFDLVFVFKDFTRPPYHINTIPVESLEDVKEFLDSSDIAFSEGPLNLNWGVIMKTVT 926
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_YEAST (FACT complex subunit SPT16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT16 PE=1 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.762e-57 Identity = 115/271 (42.44%), Postives = 170/271 (62.73%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802 RL +++RP +++P T+ H NG R+ S R D R+D+++ NIK+ FQ + E+I ++H HL N I++G KK +DVQFY E D+ V GGG+R DE+E+EQ ER ++ ++ +F+ F + + + NGL L + R+LGF GVP +++ F +PT+ CLV+L+E PFLV++L E+EI LERV G KNFDM V+KDF K V I+++P SLD +K+WL DI Y S +NLNW I+K++ DDP Sbjct: 679 RLDQIFVRP--NPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGELIVVIHIHLKNPILMGKKKIQDVQFYREASDMSVDETGGGRRGQSRFRRYGDEDELEQEQEERRKRAALDKEFKYFADAIAEAS-----NGL-LTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVINLEEVEICILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWLTDMDIPYTVSTINLNWATIMKSLQDDP 941
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_KLULA (FACT complex subunit SPT16 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT16 PE=3 SV=2) HSP 1 Score: 201.445 bits (511), Expect = 5.106e-57 Identity = 114/272 (41.91%), Postives = 170/272 (62.50%), Query Frame = 2 Query: 14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDV-VQTLGGGKRSAYX------XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805 RL +++RP +++PGT+ H NG RY S R D R+D+++ NIK+ FFQ ++ E+I ++H HL N I++G KK +D+QFY E D+ V G +R+ DE+E+EQ ER ++ ++ +F+ F + + +GL L+ D P R+LGF GVP +++ F +PT CL++LVE PFLV++L+E+EI LERV G KNFDM V+KD K V I+++P L+ IK WL DI Y S +NLNW I+K++ DDP Sbjct: 676 RLDQIFVRP--SPDTKRVPGTVFIHENGIRYQSPLRTDSRIDILFSNIKNLFFQSSKGELIVIIHVHLKNPILMGKKKIQDIQFYREASDMAVDETGNSRRNNMKFRRYGDEDELEQEQEERRKRAALDKEFRYFAEAIAE-----ASDGL-LDVDSPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVINLNEVEICILERVQFGLKNFDMVFVYKDLTKPVSHINTVPIEQLEFIKTWLTDVDIPYTVSTINLNWSTIMKSLQDDPH 939 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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