g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0011262
Unique Name	g.arboreum_cottongen_reftransV1_0011262
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	806

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0011262:1..806 . Chr4:73558366..73559171 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A067E286_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001503mg PE=4 SV=1)

HSP 1 Score: 498.434 bits (1282), Expect = 4.131e-168
Identity = 247/268 (92.16%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPI+L DLWIRPVFGGRGRKIPGTLE H+NGFR++T+R +ERVD+M+GNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRER RKNKINMDFQSFVNRVNDLWGQP+FNGLDLEFDQPLR+LGFHGVP+KASAFIVPTSSCLVEL+ETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPS+SLD IKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  434 FKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 701

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: U5GCX0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s00690g PE=4 SV=1)

HSP 1 Score: 504.597 bits (1298), Expect = 8.683e-168
Identity = 249/268 (92.91%), Postives = 263/268 (98.13%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRK+PG+LE HVNGFRYST+RA+ERVD+M+ NIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRER+RKNKINMDFQSFVNRVNDLW QPQF+GLDLEFDQPLRELGFHGVP+K ++FIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPST+LDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  672 FKPIRLTDLWIRPVFGGRGRKLPGSLEAHVNGFRYSTSRAEERVDIMFANIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERERKNKINMDFQSFVNRVNDLWAQPQFSGLDLEFDQPLRELGFHGVPHKVTSFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 939

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: G7J7Y6_MEDTR (Global transcription factor OS=Medicago truncatula GN=MTR_3g064470 PE=4 SV=1)

HSP 1 Score: 501.901 bits (1291), Expect = 8.510e-167
Identity = 247/268 (92.16%), Postives = 261/268 (97.39%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRP FGGRGRKIPGTLE HVNGFRYSTTR+DERVDVM+ NIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER+RKNKIN++FQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLPDLWIRPPFGGRGRKIPGTLEAHVNGFRYSTTRSDERVDVMFANIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERERKNKINVEFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0A0KP38_CUCSA (Global transcription factor group OS=Cucumis sativus GN=Csa_6G525380 PE=4 SV=1)

HSP 1 Score: 501.13 bits (1289), Expect = 2.200e-166
Identity = 245/268 (91.42%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLP+LWIRP FGGRGRK+PGTLE H+NGFRY+TTR++ERVD+M+GN+KHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQT+GGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYK+SAFIVPTS+CLVEL+ETPFLVV+L EIEIVNLERVG GQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYES+LNLNWRQILKTIT+DPQ
Sbjct:  682 FKPIRLPELWIRPAFGGRGRKLPGTLEAHLNGFRYATTRSEERVDIMFGNVKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKSSAFIVPTSTCLVELIETPFLVVTLGEIEIVNLERVGFGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESKLNLNWRQILKTITEDPQ 949

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A067DRA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001503mg PE=4 SV=1)

HSP 1 Score: 500.745 bits (1288), Expect = 2.396e-166
Identity = 247/268 (92.16%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPI+L DLWIRPVFGGRGRKIPGTLE H+NGFR++T+R +ERVD+M+GNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRER RKNKINMDFQSFVNRVNDLWGQP+FNGLDLEFDQPLR+LGFHGVP+KASAFIVPTSSCLVEL+ETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPS+SLD IKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: V7BLV8_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_006G0864001g PE=4 SV=1)

HSP 1 Score: 479.559 bits (1233), Expect = 2.964e-166
Identity = 239/266 (89.85%), Postives = 255/266 (95.86%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DER D+++GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRERDRKNKIN++FQ+FVNRVNDLWGQ QFNGL+LEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD
Sbjct:   45 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERGDILFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERDRKNKINVEFQTFVNRVNDLWGQAQFNGLELEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 310

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: V4SWE1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010953mg PE=4 SV=1)

HSP 1 Score: 500.36 bits (1287), Expect = 3.164e-166
Identity = 247/268 (92.16%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPI+L DLWIRPVFGGRGRKIPGTLE H+NGFR++T+R +ERVD+M+GNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRER RKNKINMDFQSFVNRVNDLWGQP+FNGLDLEFDQPLR+LGFHGVP+KASAFIVPTSSCLVEL+ETPFLVV+L EIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPS+SLD IKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A067KWM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24615 PE=4 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 4.973e-166
Identity = 247/268 (92.16%), Postives = 259/268 (96.64%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRK+PG LE HVNGFR+ST+R DERVD+M+ NIKHAFFQPAE+EMITLLHFHLHNHIMVGNKKTKDVQFYVEVM+ VQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLW QPQFNGLDLEFDQPLRELGFHGVPYK S+FIVPTSSCLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYES+LNLNWRQILKTITDDPQ
Sbjct:  661 FKPIRLSDLWIRPPFGGRGRKLPGALEAHVNGFRFSTSRPDERVDIMFANIKHAFFQPAEREMITLLHFHLHNHIMVGNKKTKDVQFYVEVMETVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWSQPQFNGLDLEFDQPLRELGFHGVPYKTSSFIVPTSSCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQ 928

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: F6I4V8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00580 PE=4 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 9.475e-166
Identity = 246/268 (91.79%), Postives = 261/268 (97.39%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRK+ G+LE+H NGFRYST+R DERVD+MYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQF+VEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVP+KASAFIVPTSSCLVEL+ETPFLV++LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWR ILKTIT+DP+
Sbjct:  676 FKPIRLSDLWIRPSFGGRGRKLTGSLESHTNGFRYSTSRPDERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFFVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFKGLDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFLVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITEDPE 943

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B2PML3_GLYSO (FACT complex subunit SPT16 OS=Glycine soja GN=glysoja_032182 PE=4 SV=1)

HSP 1 Score: 498.434 bits (1282), Expect = 2.052e-165
Identity = 244/268 (91.04%), Postives = 259/268 (96.64%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+GNIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMD+VQ +GGGKRSAYDPDE+EEEQRER RKNKIN++FQ+FVNRVNDLWGQPQFNGLDLEFDQPLRELGF GVP+K+S FIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMT+VFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 FKPIRLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFGNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERQRKNKINVEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2)

HSP 1 Score: 477.248 bits (1227), Expect = 3.125e-159
Identity = 236/267 (88.39%), Postives = 252/267 (94.38%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            KP+RL D+WIRP FGGRGRK+ GTLE+HVNGFRYST+RADERVD+MYGN+KHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG +RSA DPDEIEEEQRERDRKN+INMDFQ+FVN+VND W QPQF GLDLEFD PLRELGFHGVPYKASAFI+PTS+CLVEL+ETPFLVV+LSEIEIVNLERVG G KNFDM IVFKDFKKDVLRIDSIPSTSLD IKEWLDTTD+KYYESRLNLNWR ILKTI DDPQ
Sbjct:  661 KPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGNVKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQ 927

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1)

HSP 1 Score: 466.077 bits (1198), Expect = 6.150e-155
Identity = 232/268 (86.57%), Postives = 247/268 (92.16%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             K +RL D+WIRP FGGRGRK+ G LE H NGFRYST+R+DERVD+M+GNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG +RSA DPDEIEEEQRERDRKN+INMDFQ+FVN+VND W QPQF GLDLEFD PLRELGFHGVPYKASAFI+PTS+CLVEL+ETPFLVVSLSEIEIVNLERVG G KNFDM IVFKDFKKDVLRIDSIPS SLD IKEWLDTTD+KYYESRLNLNWR ILKTI DDPQ
Sbjct:  660 MKMMRLSDVWIRPAFGGRGRKLTGNLEAHFNGFRYSTSRSDERVDIMFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGSRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVSLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSASLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQ 927

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 1.156e-153
Identity = 229/268 (85.45%), Postives = 248/268 (92.54%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKP+RL +LWIRP F GR +KIPGTLE H NGFRYSTTR DERVDV++ NIKHAFFQPAEKEMITLLHFHLHNHIMVG KKTKDVQFYVEVMDVVQ+LGGG+RSAYDPDEI+EEQRERDRKNKINMDF  F NRVND+W  PQF  LDLEFDQPLRELGFHGVP+K SAFI+PTSSCLVEL+E PFLVVSLSEIEIVNLERVG GQKNFDM I+FKDFKKDVLR+DS+P++SL+GIKEWLDTTDIKYYES+LNLNWRQILKTITDDPQ
Sbjct:  675 FKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDERVDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGRRSAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQ 941

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_XENLA (FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.632e-70
Identity = 126/264 (47.73%), Postives = 178/264 (67.42%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N IM G K+  DVQFY EV ++   LG   +  +D D++  EQ ER+ ++K+   F++F+ +V  L  +      DLEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+V+ ERV    KNFDM IV+K++ K V  I++IP  SLD IKEWL++ DIKY E   +LNW +I+KTI DDP+
Sbjct:  663 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGK-HQHMHDRDDLYAEQLEREMRHKLKTAFKNFIEKVESLTKE------DLEFEIPFRDLGFNGAPYRSTCLLQPTSSSLVNTTEWPPFVVTLDEVELVHFERVQFHLKNFDMVIVYKEYGKKVTMINAIPMASLDPIKEWLNSCDIKYTEGVQSLNWTKIMKTIVDDPE 916

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_HUMAN (FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.486e-70
Identity = 124/264 (46.97%), Postives = 178/264 (67.42%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N IM G K+  DVQFY EV ++   LG   +  +D D++  EQ ER+ ++K+   F++F+ +V  L  +      +LEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+++ ERV    KNFDM IV+KD+ K V  I++IP  SLD IKEWL++ D+KY E   +LNW +I+KTI DDP+
Sbjct:  661 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGK-HQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPE 914

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.073e-69
Identity = 123/264 (46.59%), Postives = 178/264 (67.42%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N +M G K+  DVQFY EV ++   LG  +   +D D++  EQ ER+ ++K+   F++F+ +V  L  +      +LEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+++ ERV    KNFDM IV+KD+ K V  I++IP  SLD IKEWL++ D+KY E   +LNW +I+KTI DDP+
Sbjct:  661 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAVMFGKKRHTDVQFYTEVGEITTDLGKHQH-MHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPE 914

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CAEBR (FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.385e-69
Identity = 131/264 (49.62%), Postives = 173/264 (65.53%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL IRP      ++I G+LE H NGFRY++ R D R+DV+Y NIKHAFFQP + EMI LLHFHL N +M G KK KDVQFY EV ++   LG       D D++  EQ+ER+ + ++N  F SF  +V+ L    QF     EFD P   LGF GVP++++  + PT+SCLV L E P  +V+LSE+E+V+ ERV L  KNFDM  +FKD+K     +  IP +S+D IKEWL T DI Y E   +LNW +++KTITDDP+
Sbjct:  660 KLKDLLIRPNI--IQKRITGSLEAHTNGFRYTSLRGD-RIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVMWGKKKYKDVQFYTEVGEITTDLGK-YHHMQDRDDMHSEQQERELRRRLNTTFNSFCEKVSRLTND-QF-----EFDSPFAGLGFFGVPFRSATTLKPTASCLVNLTEWPPFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKMKTQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDDPE 913

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_SCHPO (FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt16 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.421e-68
Identity = 120/270 (44.44%), Postives = 181/270 (67.04%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P  + D+++RP   G+  ++PG +E H NG RY S  R+D  +D+++ N+KH FFQP E E+I L+H HL   IMVG +KT+DVQFY EV D+     G K+  Y     DE+E+EQ ER R+ +++ +F+SF  ++       + +   +E D P REL F+GVP++++  + PT+ CLV+L +TPF V++L+EIEI +LERV  G KNFD+  +F+DF++  + I++IP   LD +KEWLD+ DI +YE  LNLNW  I+KT+ +DP
Sbjct:  659 RPAHINDVYVRPAIDGK--RLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQFYREVSDIQFDETGNKKRKYMYGDEDELEQEQEERRRRAQLDREFKSFAEKI------AEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEIEIAHLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWLDSCDICFYEGPLNLNWTTIMKTVNEDP 920

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CAEEL (FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 4.008e-68
Identity = 130/262 (49.62%), Postives = 172/262 (65.65%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799
            +L DL IRP      ++I G+LE H NGFRY++ R D R+DV+Y NIKHAFFQP + EMI LLHFHL N ++ G KK KDVQFY EV ++   LG       D D+++ EQ+ER+ + ++N  F SF  +V+ L    QF     EFD P   LGF GVPY+++  + PT+SCLV L E P  +V+LSE+E+V+ ERV L  KNFDM  +FKD+K     +  IP +S+D IKEWL T DI Y E   +LNW +++KTITDD
Sbjct:  661 KLKDLLIRPNI--IQKRITGSLEAHTNGFRYTSLRGD-RIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVLWGKKKYKDVQFYTEVGEITTDLGK-YHHMQDRDDMQSEQQEREMRRRLNAAFNSFCEKVSRLTND-QF-----EFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDD 912

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_EMENI (FACT complex subunit spt16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spt16 PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 4.716e-67
Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P++LPD+++RP   G+  ++PG +E H NG RY +   +E VDV++ N+KH FFQP   E+I L+H HL   IM+G +KT+D+QFY E  ++     G +R  +     +E E EQ ER R+  ++ +F++F  ++ D  G+ +  G+D+  D P RE+GF GVP +++  I PT+  LV+L E PFLV+SL+EIEI +LERV  G KNFD+  VFKDF +  + I++IP  +L+G+K+WLD+ DI Y E  LNLNW  I+KT+  DP
Sbjct:  661 RPVKLPDVYLRPPLDGK--RVPGEVEIHQNGLRYVSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDIQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVISLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVENLEGVKDWLDSVDIAYTEGPLNLNWTTIMKTVVSDP 922

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067E286_CITSI	4.131e-168	92.16	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
U5GCX0_POPTR	8.683e-168	92.91	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
G7J7Y6_MEDTR	8.510e-167	92.16	Global transcription factor OS=Medicago truncatula...	[more]
A0A0A0KP38_CUCSA	2.200e-166	91.42	Global transcription factor group OS=Cucumis sativ...	[more]
A0A067DRA5_CITSI	2.396e-166	92.16	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V7BLV8_PHAVU	2.964e-166	89.85	Uncharacterized protein (Fragment) OS=Phaseolus vu...	[more]
V4SWE1_9ROSI	3.164e-166	92.16	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067KWM6_JATCU	4.973e-166	92.16	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
F6I4V8_VITVI	9.475e-166	91.79	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A0B2PML3_GLYSO	2.052e-165	91.04	FACT complex subunit SPT16 OS=Glycine soja GN=glys...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SPT16_ORYSJ	3.125e-159	88.39	FACT complex subunit SPT16 OS=Oryza sativa subsp. ...	[more]
SPT16_MAIZE	6.150e-155	86.57	FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE...	[more]
SPT16_ARATH	1.156e-153	85.45	FACT complex subunit SPT16 OS=Arabidopsis thaliana...	[more]
SP16H_XENLA	4.632e-70	47.73	FACT complex subunit SPT16 OS=Xenopus laevis GN=su...	[more]
SP16H_HUMAN	6.486e-70	46.97	FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT...	[more]
SP16H_MOUSE	1.073e-69	46.59	FACT complex subunit SPT16 OS=Mus musculus GN=Supt...	[more]
SPT16_CAEBR	2.385e-69	49.62	FACT complex subunit spt-16 OS=Caenorhabditis brig...	[more]
SPT16_SCHPO	2.421e-68	44.44	FACT complex subunit spt16 OS=Schizosaccharomyces ...	[more]
SPT16_CAEEL	4.008e-68	49.62	FACT complex subunit spt-16 OS=Caenorhabditis eleg...	[more]
SPT16_EMENI	4.716e-67	44.61	FACT complex subunit spt16 OS=Emericella nidulans ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013719	Domain of unknown function DUF1747	SMART	SM01287	Rtt106_2	coord: 114..204 e-value: 2.7E-36 score: 136.6
IPR013719	Domain of unknown function DUF1747	PFAM	PF08512	Rtt106	coord: 121..202 e-value: 1.0E-17 score: 64.2
None	No IPR available	PANTHER	PTHR13980	CDC68 RELATED	coord: 1..222

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bp
GTTCAAGCCTATTAGGCTACCTGACCTTTGGATTCGTCCTGTTTTTGGTG
GTCGTGGGAGGAAGATTCCAGGAACACTTGAAACTCATGTTAATGGTTTT
CGATATTCTACTACTAGAGCTGATGAGCGTGTTGATGTTATGTATGGGAA
CATAAAGCATGCATTCTTCCAGCCTGCAGAGAAAGAAATGATCACTCTCC
TTCACTTTCATCTGCACAATCACATAATGGTGGGAAACAAAAAAACTAAA
GATGTGCAATTTTATGTTGAGGTTATGGATGTTGTCCAGACATTGGGAGG
GGGAAAGAGGTCTGCTTATGACCCTGATGAGATTGAAGAAGAGCAAAGGG
AGAGGGATAGGAAGAATAAGATCAACATGGATTTTCAGAGTTTTGTGAAC
CGGGTAAATGATCTATGGGGGCAGCCTCAGTTCAATGGTCTTGATCTTGA
GTTTGATCAACCGCTTAGAGAACTTGGCTTCCATGGGGTCCCCTACAAAG
CCTCCGCTTTTATTGTGCCAACGTCAAGCTGTTTAGTTGAGTTGGTAGAG
ACTCCTTTCCTTGTGGTCTCCTTAAGCGAGATTGAGATCGTGAACCTGGA
GAGGGTTGGCCTTGGGCAGAAAAATTTTGACATGACCATAGTGTTCAAGG
ACTTCAAGAAAGATGTACTAAGGATTGATTCCATCCCTTCAACCTCACTT
GATGGCATCAAGGAATGGCTTGATACAACAGACATAAAGTATTACGAGAG
CAGGCTGAATCTGAACTGGCGGCAGATTCTGAAGACAATCACTGACGATC
CACAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR013719	RTT106/SPT16-like_middle_dom

Search form

g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

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